RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NWD1Q149M9 1564 aa17.67■□□□□ 0.42
SNCA-204ENST00000394989 ABTB2Q8N961 1025 aa17.67■□□□□ 0.42
SNCA-204ENST00000394989 HOXC9P31274 260 aa17.66■□□□□ 0.42
SNCA-204ENST00000394989 SETD1BQ9UPS6 1966 aaKnown RBP17.66■□□□□ 0.42
SNCA-204ENST00000394989 PHF8Q9UPP1 1060 aa17.65■□□□□ 0.42
SNCA-204ENST00000394989 KIAA0232Q92628 1395 aa17.65■□□□□ 0.42
SNCA-204ENST00000394989 KIF24Q5T7B8 1368 aa17.64■□□□□ 0.41
SNCA-204ENST00000394989 ADGRL3Q9HAR2 1447 aa17.64■□□□□ 0.41
SNCA-204ENST00000394989 C1orf115Q9H7X2 142 aa17.64■□□□□ 0.41
SNCA-204ENST00000394989 RGS12O14924 1447 aa17.64■□□□□ 0.41
SNCA-204ENST00000394989 MIS18AQ9NYP9 233 aa17.63■□□□□ 0.41
SNCA-204ENST00000394989 LTN1O94822 1766 aa17.63■□□□□ 0.41
SNCA-204ENST00000394989 NUCB1Q02818 461 aa17.62■□□□□ 0.41
SNCA-204ENST00000394989 SIRT2Q8IXJ6 389 aa17.62■□□□□ 0.41
SNCA-204ENST00000394989 API5Q9BZZ5 524 aaKnown RBP17.62■□□□□ 0.41
SNCA-204ENST00000394989 NPHP4O75161 1426 aaPredicted RBP17.62■□□□□ 0.41
SNCA-204ENST00000394989 LRRC37A3O60309 1634 aa17.61■□□□□ 0.41
SNCA-204ENST00000394989 NFAT5O94916 1531 aa17.61■□□□□ 0.41
SNCA-204ENST00000394989 ESCO1Q5FWF5 840 aa17.59■□□□□ 0.41
SNCA-204ENST00000394989 C14orf37Q86TY3 774 aa17.59■□□□□ 0.41
SNCA-204ENST00000394989 GAS2L2Q8NHY3 880 aa17.59■□□□□ 0.41
SNCA-204ENST00000394989 RTF1Q92541 710 aaKnown RBP17.59■□□□□ 0.41
SNCA-204ENST00000394989 CHMP4BQ9H444 224 aaKnown RBP17.58■□□□□ 0.4
SNCA-204ENST00000394989 LTV1Q96GA3 475 aaPredicted RBP17.58■□□□□ 0.4
SNCA-204ENST00000394989 LNPKQ9C0E8 428 aa17.58■□□□□ 0.4
SNCA-204ENST00000394989 RTL1A6NKG5 1358 aa17.58■□□□□ 0.4
SNCA-204ENST00000394989 INTS3Q68E01 1043 aaKnown RBP17.57■□□□□ 0.4
SNCA-204ENST00000394989 CHD1LQ86WJ1 897 aa17.57■□□□□ 0.4
SNCA-204ENST00000394989 TSPYL4Q9UJ04 414 aa17.57■□□□□ 0.4
SNCA-204ENST00000394989 HAP1P54257 671 aaPredicted RBP17.56■□□□□ 0.4
SNCA-204ENST00000394989 TBC1D32Q96NH3 1257 aa17.56■□□□□ 0.4
SNCA-204ENST00000394989 MSH6P52701 1360 aa17.55■□□□□ 0.4
SNCA-204ENST00000394989 USHBP1Q8N6Y0 703 aa17.55■□□□□ 0.4
SNCA-204ENST00000394989 ORAI2Q96SN7 254 aa17.55■□□□□ 0.4
SNCA-204ENST00000394989 PSME1Q06323 249 aa17.55■□□□□ 0.4
SNCA-204ENST00000394989 GCC1Q96CN9 775 aa17.55■□□□□ 0.4
SNCA-204ENST00000394989 GNAT3A8MTJ3 354 aa17.54■□□□□ 0.4
SNCA-204ENST00000394989 HTATSF1O43719 755 aaKnown RBP17.54■□□□□ 0.4
SNCA-204ENST00000394989 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
SNCA-204ENST00000394989 IP6K1Q92551 441 aa17.54■□□□□ 0.4
SNCA-204ENST00000394989 PTPRCP08575 1304 aa17.54■□□□□ 0.4
SNCA-204ENST00000394989 IL17REQ8NFR9 667 aa17.54■□□□□ 0.4
SNCA-204ENST00000394989 PHRF1Q9P1Y6 1649 aaKnown RBP17.53■□□□□ 0.4
SNCA-204ENST00000394989 DAXXQ9UER7 740 aaPredicted RBP17.53■□□□□ 0.4
SNCA-204ENST00000394989 ATP10DQ9P241 1426 aa17.53■□□□□ 0.4
SNCA-204ENST00000394989 ANKRD45Q5TZF3 282 aa17.53■□□□□ 0.4
SNCA-204ENST00000394989 MAP3K5Q99683 1374 aa17.53■□□□□ 0.4
SNCA-204ENST00000394989 G2E3Q7L622 706 aa17.52■□□□□ 0.4
SNCA-204ENST00000394989 RGPD2P0DJD1 1756 aa17.52■□□□□ 0.4
SNCA-204ENST00000394989 NBPF6Q5VWK0 638 aa17.52■□□□□ 0.39
SNCA-204ENST00000394989 NBPF4Q96M43 638 aa17.52■□□□□ 0.39
SNCA-204ENST00000394989 XPCQ01831 940 aaPredicted RBP17.51■□□□□ 0.39
SNCA-204ENST00000394989 UPF2Q9HAU5 1272 aaKnown RBP17.51■□□□□ 0.39
SNCA-204ENST00000394989 FAM208AQ9UK61 1670 aaKnown RBP17.51■□□□□ 0.39
SNCA-204ENST00000394989 TRPM3Q9HCF6 1732 aaPredicted RBP17.49■□□□□ 0.39
SNCA-204ENST00000394989 SLIT3O75094 1523 aa17.49■□□□□ 0.39
SNCA-204ENST00000394989 KCNH5Q8NCM2 988 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 ARXQ96QS3 562 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 MEIS3Q99687 375 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 F6X3S4 739 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 MFAP1P55081 439 aaKnown RBP17.48■□□□□ 0.39
SNCA-204ENST00000394989 BMP2KLQ5H9B9 411 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 DCTPP1Q9H773 170 aa17.48■□□□□ 0.39
SNCA-204ENST00000394989 ANKRD44Q8N8A2 993 aa17.47■□□□□ 0.39
SNCA-204ENST00000394989 CEP85Q6P2H3 762 aa17.47■□□□□ 0.39
SNCA-204ENST00000394989 GCP02774 474 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 LRRC59Q96AG4 307 aaKnown RBP17.46■□□□□ 0.39
SNCA-204ENST00000394989 CEMIPQ8WUJ3 1361 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 ZBTB7CA1YPR0 619 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 MED1Q15648 1581 aaPredicted RBP17.46■□□□□ 0.39
SNCA-204ENST00000394989 GSE1Q14687 1217 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 TAF7Q15545 349 aaPredicted RBP17.46■□□□□ 0.39
SNCA-204ENST00000394989 C22orf23Q9BZE7 217 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 USP35Q9P2H5 1018 aa17.46■□□□□ 0.39
SNCA-204ENST00000394989 ARHGEF25Q86VW2 580 aa17.45■□□□□ 0.38
SNCA-204ENST00000394989 PROSER2Q86WR7 435 aaPredicted RBP17.45■□□□□ 0.38
SNCA-204ENST00000394989 C1orf167Q5SNV9 1468 aa17.45■□□□□ 0.38
SNCA-204ENST00000394989 NFKBIBQ15653 356 aa17.45■□□□□ 0.38
SNCA-204ENST00000394989 PLEKHG5O94827 1062 aa17.44■□□□□ 0.38
SNCA-204ENST00000394989 RPAP2Q8IXW5 612 aaPredicted RBP17.44■□□□□ 0.38
SNCA-204ENST00000394989 NECTIN2Q92692 538 aa17.44■□□□□ 0.38
SNCA-204ENST00000394989 BABAM1Q9NWV8 329 aa17.44■□□□□ 0.38
SNCA-204ENST00000394989 SLC4A10Q6U841 1118 aa17.43■□□□□ 0.38
SNCA-204ENST00000394989 TBC1D2Q9BYX2 928 aa17.43■□□□□ 0.38
SNCA-204ENST00000394989 LGR6Q9HBX8 967 aa17.43■□□□□ 0.38
SNCA-204ENST00000394989 NCAPD2Q15021 1401 aa17.43■□□□□ 0.38
SNCA-204ENST00000394989 LMO7Q8WWI1 1683 aa17.43■□□□□ 0.38
SNCA-204ENST00000394989 FLIIQ13045 1269 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 BECN1Q14457 450 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 CCDC30Q5VVM6 783 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 STK31Q9BXU1 1019 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 STRCP1A6NGW2 1772 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 KIF1AQ12756 1690 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 AXIN2Q9Y2T1 843 aa17.42■□□□□ 0.38
SNCA-204ENST00000394989 KDM3BQ7LBC6 1761 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 CACNA1FO60840 1977 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 KRT28Q7Z3Y7 464 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 PLEKHM2Q8IWE5 1019 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 C19orf44Q9H6X5 657 aa17.41■□□□□ 0.38
SNCA-204ENST00000394989 GSPT1P15170 499 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms