RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 NSD2O96028 1365 aa12.3□□□□□ -0.44
ATG4A-205ENST00000394892 LRRC4BQ9NT99 713 aa12.29□□□□□ -0.44
ATG4A-205ENST00000394892 FLT4P35916 1363 aa12.29□□□□□ -0.44
ATG4A-205ENST00000394892 ZCRB1Q8TBF4 217 aaKnown RBP12.28□□□□□ -0.44
ATG4A-205ENST00000394892 NCAPD2Q15021 1401 aa12.28□□□□□ -0.44
ATG4A-205ENST00000394892 ZBTB7AO95365 584 aa12.27□□□□□ -0.45
ATG4A-205ENST00000394892 PRIM1P49642 420 aaKnown RBP12.27□□□□□ -0.45
ATG4A-205ENST00000394892 CGNL1Q0VF96 1302 aa12.27□□□□□ -0.45
ATG4A-205ENST00000394892 WASHC2AQ641Q2 1341 aa12.27□□□□□ -0.45
ATG4A-205ENST00000394892 KIF24Q5T7B8 1368 aa12.27□□□□□ -0.45
ATG4A-205ENST00000394892 CYP27B1O15528 508 aa12.26□□□□□ -0.45
ATG4A-205ENST00000394892 KCNQ4P56696 695 aa12.26□□□□□ -0.45
ATG4A-205ENST00000394892 ZNF827Q17R98 1081 aa12.26□□□□□ -0.45
ATG4A-205ENST00000394892 EYA1Q99502 592 aa12.26□□□□□ -0.45
ATG4A-205ENST00000394892 NHSQ6T4R5 1651 aa12.26□□□□□ -0.45
ATG4A-205ENST00000394892 TNNT2P45379 298 aaPredicted RBP12.25□□□□□ -0.45
ATG4A-205ENST00000394892 SLC15A2Q16348 729 aa12.25□□□□□ -0.45
ATG4A-205ENST00000394892 ATF5Q9Y2D1 282 aaPredicted RBP12.25□□□□□ -0.45
ATG4A-205ENST00000394892 KIF7Q2M1P5 1343 aa12.25□□□□□ -0.45
ATG4A-205ENST00000394892 RGPD2P0DJD1 1756 aa12.25□□□□□ -0.45
ATG4A-205ENST00000394892 RGPD3A6NKT7 1758 aaPredicted RBP12.24□□□□□ -0.45
ATG4A-205ENST00000394892 PPM1GO15355 546 aaPredicted RBP12.24□□□□□ -0.45
ATG4A-205ENST00000394892 RGPD4Q7Z3J3 1758 aa12.24□□□□□ -0.45
ATG4A-205ENST00000394892 MTFR1LQ9H019 292 aa12.24□□□□□ -0.45
ATG4A-205ENST00000394892 KIF20BQ96Q89 1820 aa12.23□□□□□ -0.45
ATG4A-205ENST00000394892 SHANK3Q9BYB0 1731 aa12.23□□□□□ -0.45
ATG4A-205ENST00000394892 PTGER2P43116 358 aa12.23□□□□□ -0.45
ATG4A-205ENST00000394892 EIF4A2Q14240 407 aaKnown RBP12.23□□□□□ -0.45
ATG4A-205ENST00000394892 PAPPAQ13219 1627 aa12.22□□□□□ -0.45
ATG4A-205ENST00000394892 TATP17735 454 aaPredicted RBP12.22□□□□□ -0.45
ATG4A-205ENST00000394892 AMER1Q5JTC6 1135 aaPredicted RBP12.22□□□□□ -0.45
ATG4A-205ENST00000394892 RAPGEF4Q8WZA2 1011 aa12.22□□□□□ -0.45
ATG4A-205ENST00000394892 AKT1S1Q96B36 256 aa12.22□□□□□ -0.45
ATG4A-205ENST00000394892 SGIP1Q9BQI5 828 aa12.22□□□□□ -0.45
ATG4A-205ENST00000394892 SMG6Q86US8 1419 aaKnown RBP12.21□□□□□ -0.45
ATG4A-205ENST00000394892 PER1O15534 1290 aaPredicted RBP12.21□□□□□ -0.45
ATG4A-205ENST00000394892 SYTL4Q96C24 671 aaPredicted RBP12.21□□□□□ -0.45
ATG4A-205ENST00000394892 SYT17Q9BSW7 474 aa12.21□□□□□ -0.45
ATG4A-205ENST00000394892 FHDC1Q9C0D6 1143 aaPredicted RBP12.21□□□□□ -0.45
ATG4A-205ENST00000394892 CASZ1Q86V15 1759 aa12.2□□□□□ -0.46
ATG4A-205ENST00000394892 ANKRD26Q9UPS8 1709 aa12.2□□□□□ -0.46
ATG4A-205ENST00000394892 BTAF1O14981 1849 aa12.19□□□□□ -0.46
ATG4A-205ENST00000394892 NKX1-1Q15270 411 aaPredicted RBP12.19□□□□□ -0.46
ATG4A-205ENST00000394892 ZNF784Q8NCA9 323 aaPredicted RBP12.19□□□□□ -0.46
ATG4A-205ENST00000394892 ARXQ96QS3 562 aa12.19□□□□□ -0.46
ATG4A-205ENST00000394892 IGSF1Q8N6C5 1336 aa12.18□□□□□ -0.46
ATG4A-205ENST00000394892 PCDH11XQ9BZA7 1347 aa12.18□□□□□ -0.46
ATG4A-205ENST00000394892 PCDH11YQ9BZA8 1340 aa12.18□□□□□ -0.46
ATG4A-205ENST00000394892 AEBP1Q8IUX7 1158 aa12.18□□□□□ -0.46
ATG4A-205ENST00000394892 SLC27A3Q5K4L6 730 aa12.17□□□□□ -0.46
ATG4A-205ENST00000394892 MORC1Q86VD1 984 aa12.17□□□□□ -0.46
ATG4A-205ENST00000394892 PIGBQ92521 554 aa12.17□□□□□ -0.46
ATG4A-205ENST00000394892 PNPLA7Q6ZV29 1317 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 PHKG2P15735 406 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 POLD1P28340 1107 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 GPR162Q16538 588 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 AMIGO3Q86WK7 504 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 KNSTRNQ9Y448 316 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 DOT1LQ8TEK3 1739 aa12.16□□□□□ -0.46
ATG4A-205ENST00000394892 IL13P35225 146 aa12.15□□□□□ -0.46
ATG4A-205ENST00000394892 MPRIPQ6WCQ1 1025 aa12.15□□□□□ -0.46
ATG4A-205ENST00000394892 SLC16A10Q8TF71 515 aa12.15□□□□□ -0.46
ATG4A-205ENST00000394892 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.15□□□□□ -0.46
ATG4A-205ENST00000394892 CCNL1Q9UK58 526 aaPredicted RBP12.15□□□□□ -0.46
ATG4A-205ENST00000394892 TOGARAM1Q9Y4F4 1720 aa12.14□□□□□ -0.47
ATG4A-205ENST00000394892 SENP3-EIF4A1A0A087X0R7 540 aa12.14□□□□□ -0.47
ATG4A-205ENST00000394892 SMIM5Q71RC9 77 aa12.14□□□□□ -0.47
ATG4A-205ENST00000394892 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
ATG4A-205ENST00000394892 PKD1L3Q7Z443 1732 aa12.14□□□□□ -0.47
ATG4A-205ENST00000394892 C1QTNF8P60827 252 aa12.13□□□□□ -0.47
ATG4A-205ENST00000394892 SPG7Q9UQ90 795 aa12.13□□□□□ -0.47
ATG4A-205ENST00000394892 PALLDQ8WX93 1383 aa12.13□□□□□ -0.47
ATG4A-205ENST00000394892 MAP3K5Q99683 1374 aa12.13□□□□□ -0.47
ATG4A-205ENST00000394892 MAP2P11137 1827 aaKnown RBP12.12□□□□□ -0.47
ATG4A-205ENST00000394892 MTHFSP49914 203 aa12.12□□□□□ -0.47
ATG4A-205ENST00000394892 COL23A1Q86Y22 540 aaPredicted RBP12.12□□□□□ -0.47
ATG4A-205ENST00000394892 PELP1Q8IZL8 1130 aaKnown RBP12.12□□□□□ -0.47
ATG4A-205ENST00000394892 SLC4A9Q96Q91 983 aa12.12□□□□□ -0.47
ATG4A-205ENST00000394892 TFCP2L1Q9NZI6 479 aa12.12□□□□□ -0.47
ATG4A-205ENST00000394892 ASAP1Q9ULH1 1129 aa12.12□□□□□ -0.47
ATG4A-205ENST00000394892 HMGB2P26583 209 aaKnown RBP12.11□□□□□ -0.47
ATG4A-205ENST00000394892 ITPK1Q13572 414 aa12.11□□□□□ -0.47
ATG4A-205ENST00000394892 CC2D1BQ5T0F9 858 aaKnown RBP12.11□□□□□ -0.47
ATG4A-205ENST00000394892 IFNL2Q8IZJ0 200 aa12.11□□□□□ -0.47
ATG4A-205ENST00000394892 LY75O60449 1722 aa12.11□□□□□ -0.47
ATG4A-205ENST00000394892 KDM6AO15550 1401 aaPredicted RBP12.11□□□□□ -0.47
ATG4A-205ENST00000394892 KDRP35968 1356 aa12.1□□□□□ -0.47
ATG4A-205ENST00000394892 SULT6B1Q6IMI4 303 aa12.1□□□□□ -0.47
ATG4A-205ENST00000394892 ATG3Q9NT62 314 aa12.1□□□□□ -0.47
ATG4A-205ENST00000394892 GIGYF1O75420 1035 aaPredicted RBP12.09□□□□□ -0.47
ATG4A-205ENST00000394892 LINC00116Q8NCU8 138 aa12.09□□□□□ -0.47
ATG4A-205ENST00000394892 PLEKHG2Q9H7P9 1386 aa12.08□□□□□ -0.48
ATG4A-205ENST00000394892 NPC1L1Q9UHC9 1359 aa12.08□□□□□ -0.48
ATG4A-205ENST00000394892 LOC102724428A0A0B4J2F2 783 aa12.08□□□□□ -0.48
ATG4A-205ENST00000394892 SIK1P57059 783 aa12.08□□□□□ -0.48
ATG4A-205ENST00000394892 ZNF530Q6P9A1 599 aaPredicted RBP12.08□□□□□ -0.48
ATG4A-205ENST00000394892 UTRNP46939 3433 aa12.08□□□□□ -0.48
ATG4A-205ENST00000394892 GRIN3BO60391 1043 aa12.07□□□□□ -0.48
ATG4A-205ENST00000394892 CNGB1Q14028 1251 aaPredicted RBP12.07□□□□□ -0.48
ATG4A-205ENST00000394892 PLEKHO1Q53GL0 409 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms