RNA–Protein interactions for RNA: ENST00000394611.6

RTN4-206, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,161 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-206ENST00000394611 PKP1Q13835 747 aa10.78□□□□□ -0.68
RTN4-206ENST00000394611 ROBO2Q9HCK4 1378 aa10.78□□□□□ -0.68
RTN4-206ENST00000394611 VPS37CA5D8V6 355 aaPredicted RBP10.78□□□□□ -0.68
RTN4-206ENST00000394611 ZGPATQ8N5A5 531 aaKnown RBP10.78□□□□□ -0.68
RTN4-206ENST00000394611 VGLL3A8MV65 326 aa10.78□□□□□ -0.68
RTN4-206ENST00000394611 DCTN1Q14203 1278 aa10.78□□□□□ -0.68
RTN4-206ENST00000394611 TTC12Q9H892 705 aaPredicted RBP10.78□□□□□ -0.68
RTN4-206ENST00000394611 CHD2O14647 1828 aaKnown RBP10.77□□□□□ -0.68
RTN4-206ENST00000394611 FGD1P98174 961 aa10.77□□□□□ -0.68
RTN4-206ENST00000394611 CD2BP2O95400 341 aaKnown RBP10.77□□□□□ -0.69
RTN4-206ENST00000394611 CHD1LQ86WJ1 897 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 C16orf71Q8IYS4 520 aaPredicted RBP10.77□□□□□ -0.69
RTN4-206ENST00000394611 PLCD3Q8N3E9 789 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 CGNQ9P2M7 1197 aaKnown RBP10.77□□□□□ -0.69
RTN4-206ENST00000394611 ABCC11Q96J66 1382 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 STRCP1A6NGW2 1772 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 BAG4O95429 457 aaKnown RBP10.77□□□□□ -0.69
RTN4-206ENST00000394611 ATF7IPQ6VMQ6 1270 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 IFT57Q9NWB7 429 aa10.77□□□□□ -0.69
RTN4-206ENST00000394611 ARHGEF28Q8N1W1 1705 aaKnown RBP10.76□□□□□ -0.69
RTN4-206ENST00000394611 PPFIA3O75145 1194 aa10.76□□□□□ -0.69
RTN4-206ENST00000394611 ZFP91Q96JP5 570 aaPredicted RBP10.76□□□□□ -0.69
RTN4-206ENST00000394611 SKIDA1Q1XH10 827 aa10.75□□□□□ -0.69
RTN4-206ENST00000394611 USP19O94966 1318 aa10.75□□□□□ -0.69
RTN4-206ENST00000394611 PIK3R4Q99570 1358 aa10.75□□□□□ -0.69
RTN4-206ENST00000394611 TBC1D9Q6ZT07 1266 aa10.75□□□□□ -0.69
RTN4-206ENST00000394611 NKTRP30414 1462 aaKnown RBP10.75□□□□□ -0.69
RTN4-206ENST00000394611 PROSER2Q86WR7 435 aaPredicted RBP10.75□□□□□ -0.69
RTN4-206ENST00000394611 XRN1Q8IZH2 1706 aaKnown RBP10.75□□□□□ -0.69
RTN4-206ENST00000394611 EIF3AQ14152 1382 aaKnown RBP10.74□□□□□ -0.69
RTN4-206ENST00000394611 ATAD2Q6PL18 1390 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 ZSCAN23Q3MJ62 389 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 CEBPZQ03701 1054 aaKnown RBP10.74□□□□□ -0.69
RTN4-206ENST00000394611 PPP4R3BQ5MIZ7 849 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 TESK2Q96S53 571 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 CHMP4AQ9BY43 222 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 RBSNQ9H1K0 784 aa10.74□□□□□ -0.69
RTN4-206ENST00000394611 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.74□□□□□ -0.69
RTN4-206ENST00000394611 V9GYY5 206 aaPredicted RBP10.74□□□□□ -0.69
RTN4-206ENST00000394611 LTV1Q96GA3 475 aaPredicted RBP10.73□□□□□ -0.69
RTN4-206ENST00000394611 MIS18AQ9NYP9 233 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 PARD3Q8TEW0 1356 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 KDM4AO75164 1064 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 CDC45O75419 566 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 PRKAR2BP31323 418 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 FERMT3Q86UX7 667 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 TECPR2O15040 1411 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 CPS1P31327 1500 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 KNDC1Q76NI1 1749 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 CAMK4Q16566 473 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 QRICH2Q9H0J4 1663 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 MCCP23508 829 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 GORABQ5T7V8 394 aa10.73□□□□□ -0.69
RTN4-206ENST00000394611 SYAP1Q96A49 352 aaPredicted RBP10.73□□□□□ -0.69
RTN4-206ENST00000394611 CCAR2Q8N163 923 aaKnown RBP10.72□□□□□ -0.69
RTN4-206ENST00000394611 NUCB2P80303 420 aa10.72□□□□□ -0.69
RTN4-206ENST00000394611 DLC1Q96QB1 1528 aa10.72□□□□□ -0.69
RTN4-206ENST00000394611 KIF16BQ96L93 1317 aa10.72□□□□□ -0.69
RTN4-206ENST00000394611 TNNT3P45378 269 aaPredicted RBP10.72□□□□□ -0.69
RTN4-206ENST00000394611 ZRSR1Q15695 479 aaKnown RBP10.72□□□□□ -0.69
RTN4-206ENST00000394611 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
RTN4-206ENST00000394611 BBXQ8WY36 941 aaPredicted RBP10.72□□□□□ -0.69
RTN4-206ENST00000394611 EXOC6BQ9Y2D4 811 aa10.72□□□□□ -0.69
RTN4-206ENST00000394611 NWD1Q149M9 1564 aa10.71□□□□□ -0.69
RTN4-206ENST00000394611 PTCH1Q13635 1447 aa10.71□□□□□ -0.69
RTN4-206ENST00000394611 ANTXR1Q9H6X2 564 aa10.71□□□□□ -0.69
RTN4-206ENST00000394611 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.71□□□□□ -0.69
RTN4-206ENST00000394611 OTUD7AQ8TE49 926 aaPredicted RBP10.71□□□□□ -0.69
RTN4-206ENST00000394611 CCDC39Q9UFE4 941 aa10.71□□□□□ -0.69
RTN4-206ENST00000394611 FAM135BQ49AJ0 1406 aa10.71□□□□□ -0.7
RTN4-206ENST00000394611 TMEM94Q12767 1356 aa10.71□□□□□ -0.7
RTN4-206ENST00000394611 HCLS1P14317 486 aaPredicted RBP10.71□□□□□ -0.7
RTN4-206ENST00000394611 TSPY26PQ9H489 355 aa10.71□□□□□ -0.7
RTN4-206ENST00000394611 HSP90B1P14625 803 aaKnown RBP10.7□□□□□ -0.7
RTN4-206ENST00000394611 SIRT1Q96EB6 747 aa10.7□□□□□ -0.7
RTN4-206ENST00000394611 IL1RAPL2Q9NP60 686 aa10.7□□□□□ -0.7
RTN4-206ENST00000394611 C16orf45Q96MC5 204 aaPredicted RBP10.7□□□□□ -0.7
RTN4-206ENST00000394611 CSPP1Q1MSJ5 1256 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 FMNL2Q96PY5 1086 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 DIAPH1O60610 1272 aaKnown RBP10.69□□□□□ -0.7
RTN4-206ENST00000394611 FAM83GA6ND36 823 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 PTMSP20962 102 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 CDK19Q9BWU1 502 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 CARD14Q9BXL6 1004 aa10.69□□□□□ -0.7
RTN4-206ENST00000394611 KRT24Q2M2I5 525 aa10.68□□□□□ -0.7
RTN4-206ENST00000394611 INTS3Q68E01 1043 aaKnown RBP10.68□□□□□ -0.7
RTN4-206ENST00000394611 STK11IPQ8N1F8 1099 aa10.68□□□□□ -0.7
RTN4-206ENST00000394611 LRRC7Q96NW7 1537 aa10.68□□□□□ -0.7
RTN4-206ENST00000394611 LMOD2Q6P5Q4 547 aa10.68□□□□□ -0.7
RTN4-206ENST00000394611 TULP4Q9NRJ4 1543 aa10.68□□□□□ -0.7
RTN4-206ENST00000394611 NALCNQ8IZF0 1738 aa10.67□□□□□ -0.7
RTN4-206ENST00000394611 F6X3S4 739 aa10.67□□□□□ -0.7
RTN4-206ENST00000394611 STK3Q13188 491 aa10.67□□□□□ -0.7
RTN4-206ENST00000394611 PDCL2Q8N4E4 241 aa10.67□□□□□ -0.7
RTN4-206ENST00000394611 XIRP1Q702N8 1843 aaKnown RBP10.67□□□□□ -0.7
RTN4-206ENST00000394611 EVC2Q86UK5 1308 aa10.67□□□□□ -0.7
RTN4-206ENST00000394611 WASLO00401 505 aaPredicted RBP10.67□□□□□ -0.7
RTN4-206ENST00000394611 EIF2S2P20042 333 aaKnown RBP10.67□□□□□ -0.7
RTN4-206ENST00000394611 TMPOP42166 694 aaKnown RBP10.67□□□□□ -0.7
RTN4-206ENST00000394611 CKAP2LQ8IYA6 745 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms