RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
GTF2F1-201ENST00000394456 MIS18AQ9NYP9 233 aa16.91■□□□□ 0.3
GTF2F1-201ENST00000394456 C14orf37Q86TY3 774 aa16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 ANKARQ7Z5J8 1434 aa16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 C16orf71Q8IYS4 520 aaPredicted RBP16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 CFAP44Q96MT7 982 aa16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 ABCC4O15439 1325 aa16.9■□□□□ 0.3
GTF2F1-201ENST00000394456 AMPHP49418 695 aa16.89■□□□□ 0.29
GTF2F1-201ENST00000394456 CALD1Q05682 793 aaKnown RBP16.89■□□□□ 0.29
GTF2F1-201ENST00000394456 KIF2CQ99661 725 aa16.89■□□□□ 0.29
GTF2F1-201ENST00000394456 RGPD1P0DJD0 1748 aa16.89■□□□□ 0.29
GTF2F1-201ENST00000394456 BRPF1P55201 1214 aaPredicted RBP16.89■□□□□ 0.29
GTF2F1-201ENST00000394456 APBB1O00213 710 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 MCM4P33991 863 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 LMOD3Q0VAK6 560 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 ABTB2Q8N961 1025 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 OTUD7AQ8TE49 926 aaPredicted RBP16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 FOXO3O43524 673 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 TBC1D9Q6ZT07 1266 aa16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 MARF1Q9Y4F3 1742 aaKnown RBP16.88■□□□□ 0.29
GTF2F1-201ENST00000394456 FLT4P35916 1363 aa16.87■□□□□ 0.29
GTF2F1-201ENST00000394456 SBNO1A3KN83 1393 aa16.87■□□□□ 0.29
GTF2F1-201ENST00000394456 HSCBQ8IWL3 235 aa16.86■□□□□ 0.29
GTF2F1-201ENST00000394456 PHF8Q9UPP1 1060 aa16.86■□□□□ 0.29
GTF2F1-201ENST00000394456 GSPT1P15170 499 aaKnown RBP16.86■□□□□ 0.29
GTF2F1-201ENST00000394456 BMP2KLQ5H9B9 411 aa16.85■□□□□ 0.29
GTF2F1-201ENST00000394456 ARHGAP45Q92619 1136 aa16.85■□□□□ 0.29
GTF2F1-201ENST00000394456 NPHP4O75161 1426 aaPredicted RBP16.85■□□□□ 0.29
GTF2F1-201ENST00000394456 RBM25P49756 843 aaKnown RBP16.85■□□□□ 0.29
GTF2F1-201ENST00000394456 SMARCA5O60264 1052 aaPredicted RBP16.84■□□□□ 0.29
GTF2F1-201ENST00000394456 ESCO1Q5FWF5 840 aa16.84■□□□□ 0.29
GTF2F1-201ENST00000394456 CHMP5Q9NZZ3 219 aa16.84■□□□□ 0.29
GTF2F1-201ENST00000394456 PLEKHG5O94827 1062 aa16.83■□□□□ 0.29
GTF2F1-201ENST00000394456 ZNF428Q96B54 188 aa16.83■□□□□ 0.29
GTF2F1-201ENST00000394456 LTV1Q96GA3 475 aaPredicted RBP16.83■□□□□ 0.29
GTF2F1-201ENST00000394456 EYA1Q99502 592 aa16.83■□□□□ 0.29
GTF2F1-201ENST00000394456 PANK2Q9BZ23 570 aa16.83■□□□□ 0.29
GTF2F1-201ENST00000394456 GCC1Q96CN9 775 aa16.83■□□□□ 0.28
GTF2F1-201ENST00000394456 ADGRL3Q9HAR2 1447 aa16.82■□□□□ 0.28
GTF2F1-201ENST00000394456 ARHGEF10O15013 1369 aa16.82■□□□□ 0.28
GTF2F1-201ENST00000394456 HOXC9P31274 260 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 MTHFSDQ2M296 383 aaKnown RBP16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 PLEKHM2Q8IWE5 1019 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 MEIS3Q99687 375 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 DNAJC5Q9H3Z4 198 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 TRAK2O60296 914 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 DDIT3P35638 169 aa16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 XPCQ01831 940 aaPredicted RBP16.81■□□□□ 0.28
GTF2F1-201ENST00000394456 RGS12O14924 1447 aa16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 F6X3S4 739 aa16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 G2E3Q7L622 706 aa16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 API5Q9BZZ5 524 aaKnown RBP16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 LTN1O94822 1766 aa16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 HSP90AB1P08238 724 aaKnown RBP16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 PSME1Q06323 249 aa16.8■□□□□ 0.28
GTF2F1-201ENST00000394456 IGSF1Q8N6C5 1336 aa16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 XRCC6P12956 609 aaKnown RBP eCLIP16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 ORAI2Q96SN7 254 aa16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 CHL1O00533 1208 aa16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 TNPO1Q92973 898 aaKnown RBP16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 MSH6P52701 1360 aa16.79■□□□□ 0.28
GTF2F1-201ENST00000394456 GAS2L2Q8NHY3 880 aa16.78■□□□□ 0.28
GTF2F1-201ENST00000394456 KDRP35968 1356 aa16.78■□□□□ 0.28
GTF2F1-201ENST00000394456 NCOA3Q9Y6Q9 1424 aa16.77■□□□□ 0.28
GTF2F1-201ENST00000394456 USHBP1Q8N6Y0 703 aa16.77■□□□□ 0.28
GTF2F1-201ENST00000394456 USP54Q70EL1 1684 aa16.77■□□□□ 0.28
GTF2F1-201ENST00000394456 NECTIN2Q92692 538 aa16.77■□□□□ 0.28
GTF2F1-201ENST00000394456 DCTPP1Q9H773 170 aa16.77■□□□□ 0.28
GTF2F1-201ENST00000394456 ATP10DQ9P241 1426 aa16.77■□□□□ 0.27
GTF2F1-201ENST00000394456 SLC4A2P04920 1241 aa16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 SNX21Q969T3 373 aa16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 INTS3Q68E01 1043 aaKnown RBP16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 CEP85Q6P2H3 762 aa16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 SLC4A10Q6U841 1118 aa16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 TSHZ3Q63HK5 1081 aa16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 RTF1Q92541 710 aaKnown RBP16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 RRAGDQ9NQL2 400 aaPredicted RBP16.76■□□□□ 0.27
GTF2F1-201ENST00000394456 PROSER2Q86WR7 435 aaPredicted RBP16.75■□□□□ 0.27
GTF2F1-201ENST00000394456 CRB1P82279 1406 aa16.75■□□□□ 0.27
GTF2F1-201ENST00000394456 CDC45O75419 566 aa16.75■□□□□ 0.27
GTF2F1-201ENST00000394456 LMOD2Q6P5Q4 547 aa16.75■□□□□ 0.27
GTF2F1-201ENST00000394456 NWD1Q149M9 1564 aa16.74■□□□□ 0.27
GTF2F1-201ENST00000394456 ANKRD44Q8N8A2 993 aa16.74■□□□□ 0.27
GTF2F1-201ENST00000394456 FSD2A1L4K1 749 aa16.74■□□□□ 0.27
GTF2F1-201ENST00000394456 SSFA2P28290 1259 aa16.74■□□□□ 0.27
GTF2F1-201ENST00000394456 TTC22Q5TAA0 569 aa16.73■□□□□ 0.27
GTF2F1-201ENST00000394456 RTL1A6NKG5 1358 aa16.73■□□□□ 0.27
GTF2F1-201ENST00000394456 GOLGA6L3A6NEY3 463 aa16.73■□□□□ 0.27
GTF2F1-201ENST00000394456 HSP90AA1P07900 732 aaKnown RBP16.73■□□□□ 0.27
GTF2F1-201ENST00000394456 CHMP4BQ9H444 224 aaKnown RBP16.72■□□□□ 0.27
GTF2F1-201ENST00000394456 TSPYL4Q9UJ04 414 aa16.72■□□□□ 0.27
GTF2F1-201ENST00000394456 NFAT5O94916 1531 aa16.72■□□□□ 0.27
GTF2F1-201ENST00000394456 K7ELQ4 463 aaPredicted RBP16.71■□□□□ 0.27
GTF2F1-201ENST00000394456 SDSP20132 328 aa16.71■□□□□ 0.27
GTF2F1-201ENST00000394456 KIF24Q5T7B8 1368 aa16.71■□□□□ 0.27
GTF2F1-201ENST00000394456 RGPD2P0DJD1 1756 aa16.71■□□□□ 0.27
GTF2F1-201ENST00000394456 GAS2L3Q86XJ1 694 aa16.7■□□□□ 0.26
GTF2F1-201ENST00000394456 RAB3GAP1Q15042 981 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms