RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TTC21AQ8NDW8 1320 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 RRP9O43818 475 aaKnown RBP12.05□□□□□ -0.48
COL6A3-204ENST00000392003 NUCB1Q02818 461 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 C8orf58Q8NAV2 365 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 USP6P35125 1406 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 PTPRUQ92729 1446 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 C3P01024 1663 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 ANKRD45Q5TZF3 282 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 CHD1LQ86WJ1 897 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 AEBP1Q8IUX7 1158 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 ZBTB7BO15156 539 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-204ENST00000392003 HSP90AB2PQ58FF8 381 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 C22orf23Q9BZE7 217 aa12.05□□□□□ -0.48
COL6A3-204ENST00000392003 PTCH1Q13635 1447 aa12.04□□□□□ -0.48
COL6A3-204ENST00000392003 RTF1Q92541 710 aaKnown RBP12.04□□□□□ -0.48
COL6A3-204ENST00000392003 PHF8Q9UPP1 1060 aa12.04□□□□□ -0.48
COL6A3-204ENST00000392003 PROSER2Q86WR7 435 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-204ENST00000392003 SLKQ9H2G2 1235 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-204ENST00000392003 C1orf115Q9H7X2 142 aa12.03□□□□□ -0.48
COL6A3-204ENST00000392003 ABCC4O15439 1325 aa12.03□□□□□ -0.48
COL6A3-204ENST00000392003 FER1L4A9Z1Z3 1794 aa12.03□□□□□ -0.48
COL6A3-204ENST00000392003 OVOS2A0A0J9YW53 1432 aa12.03□□□□□ -0.48
COL6A3-204ENST00000392003 OVOS2Q6IE36 1432 aa12.03□□□□□ -0.48
COL6A3-204ENST00000392003 FAM43AQ8N2R8 423 aa12.02□□□□□ -0.48
COL6A3-204ENST00000392003 PIK3R4Q99570 1358 aa12.02□□□□□ -0.49
COL6A3-204ENST00000392003 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-204ENST00000392003 GSE1Q14687 1217 aa12.02□□□□□ -0.49
COL6A3-204ENST00000392003 FRAT2O75474 233 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-204ENST00000392003 MCM10Q7L590 875 aa12.01□□□□□ -0.49
COL6A3-204ENST00000392003 RRAGDQ9NQL2 400 aaPredicted RBP12.01□□□□□ -0.49
COL6A3-204ENST00000392003 ARHGAP23Q9P227 1491 aa12.01□□□□□ -0.49
COL6A3-204ENST00000392003 HSP90AA1P07900 732 aaKnown RBP12.01□□□□□ -0.49
COL6A3-204ENST00000392003 SLIT1O75093 1534 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 USP31Q70CQ4 1352 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 CHL1O00533 1208 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 DLG5Q8TDM6 1919 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 FLT4P35916 1363 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 HSCBQ8IWL3 235 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 TBC1D2Q9BYX2 928 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 MAP3K19Q56UN5 1328 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 KIF24Q5T7B8 1368 aa12□□□□□ -0.49
COL6A3-204ENST00000392003 NRKQ7Z2Y5 1582 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 XPCQ01831 940 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-204ENST00000392003 BMP2KLQ5H9B9 411 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 GAS2L2Q8NHY3 880 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 IPO4Q8TEX9 1081 aaKnown RBP11.99□□□□□ -0.49
COL6A3-204ENST00000392003 SBNO1A3KN83 1393 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 ARHGEF10O15013 1369 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 KIAA0232Q92628 1395 aa11.99□□□□□ -0.49
COL6A3-204ENST00000392003 TSPYL4Q9UJ04 414 aa11.98□□□□□ -0.49
COL6A3-204ENST00000392003 TOPAZ1Q8N9V7 1692 aa11.98□□□□□ -0.49
COL6A3-204ENST00000392003 VGLL3A8MV65 326 aa11.98□□□□□ -0.49
COL6A3-204ENST00000392003 FOXO3O43524 673 aa11.98□□□□□ -0.49
COL6A3-204ENST00000392003 PTPRCP08575 1304 aa11.97□□□□□ -0.49
COL6A3-204ENST00000392003 INTS3Q68E01 1043 aaKnown RBP11.97□□□□□ -0.49
COL6A3-204ENST00000392003 SECISBP2LQ93073 1101 aaKnown RBP11.97□□□□□ -0.49
COL6A3-204ENST00000392003 KRT24Q2M2I5 525 aa11.96□□□□□ -0.49
COL6A3-204ENST00000392003 RIMS1Q86UR5 1692 aaKnown RBP11.96□□□□□ -0.49
COL6A3-204ENST00000392003 CEP170BQ9Y4F5 1589 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-204ENST00000392003 RPAP2Q8IXW5 612 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-204ENST00000392003 SPRYD3Q8NCJ5 442 aa11.96□□□□□ -0.49
COL6A3-204ENST00000392003 SLC4A2P04920 1241 aa11.96□□□□□ -0.5
COL6A3-204ENST00000392003 ATF3P18847 181 aa11.96□□□□□ -0.5
COL6A3-204ENST00000392003 MTHFSDQ2M296 383 aaKnown RBP11.96□□□□□ -0.5
COL6A3-204ENST00000392003 STK31Q9BXU1 1019 aa11.96□□□□□ -0.5
COL6A3-204ENST00000392003 SSH2Q76I76 1423 aa11.96□□□□□ -0.5
COL6A3-204ENST00000392003 DIP2AQ14689 1571 aa11.95□□□□□ -0.5
COL6A3-204ENST00000392003 SIRT2Q8IXJ6 389 aa11.95□□□□□ -0.5
COL6A3-204ENST00000392003 ZNF830Q96NB3 372 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-204ENST00000392003 EYA1Q99502 592 aa11.95□□□□□ -0.5
COL6A3-204ENST00000392003 NPHP4O75161 1426 aaPredicted RBP11.94□□□□□ -0.5
COL6A3-204ENST00000392003 HMMRO75330 724 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 CHMP5Q9NZZ3 219 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 ANKARQ7Z5J8 1434 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.94□□□□□ -0.5
COL6A3-204ENST00000392003 ANKRD44Q8N8A2 993 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 DCTPP1Q9H773 170 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 MIS18AQ9NYP9 233 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 CDC45O75419 566 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 SLC4A10Q6U841 1118 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 ORAI2Q96SN7 254 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 NALCNQ8IZF0 1738 aa11.94□□□□□ -0.5
COL6A3-204ENST00000392003 HTATSF1O43719 755 aaKnown RBP11.93□□□□□ -0.5
COL6A3-204ENST00000392003 RBM25P49756 843 aaKnown RBP11.93□□□□□ -0.5
COL6A3-204ENST00000392003 IGSF1Q8N6C5 1336 aa11.93□□□□□ -0.5
COL6A3-204ENST00000392003 ZHX1Q9UKY1 873 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-204ENST00000392003 HSP90AB1P08238 724 aaKnown RBP11.92□□□□□ -0.5
COL6A3-204ENST00000392003 PEAK1Q9H792 1746 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 GNAT3A8MTJ3 354 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 CCT4P50991 539 aaKnown RBP11.92□□□□□ -0.5
COL6A3-204ENST00000392003 ANTXR1Q9H6X2 564 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 CRB1P82279 1406 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 HOXC9P31274 260 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 HSPA2P54652 639 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 CASC1Q6TDU7 716 aa11.92□□□□□ -0.5
COL6A3-204ENST00000392003 TBC1D9Q6ZT07 1266 aa11.91□□□□□ -0.5
COL6A3-204ENST00000392003 USHBP1Q8N6Y0 703 aa11.91□□□□□ -0.5
COL6A3-204ENST00000392003 KCNH5Q8NCM2 988 aa11.91□□□□□ -0.5
COL6A3-204ENST00000392003 KDRP35968 1356 aa11.91□□□□□ -0.5
COL6A3-204ENST00000392003 CCDC30Q5VVM6 783 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms