RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 NFE2L2Q16236 605 aa17.11■□□□□ 0.33
SDC1-202ENST00000381150 DDX19BQ9UMR2 479 aa17.11■□□□□ 0.33
SDC1-202ENST00000381150 PRPF40AO75400 957 aaKnown RBP17.11■□□□□ 0.33
SDC1-202ENST00000381150 CEBPAP49715 358 aaPredicted RBP17.11■□□□□ 0.33
SDC1-202ENST00000381150 RAB3GAP1Q15042 981 aa17.11■□□□□ 0.33
SDC1-202ENST00000381150 DLG5Q8TDM6 1919 aa17.11■□□□□ 0.33
SDC1-202ENST00000381150 K7ELQ4 463 aaPredicted RBP17.1■□□□□ 0.33
SDC1-202ENST00000381150 ATF7IPQ6VMQ6 1270 aa17.1■□□□□ 0.33
SDC1-202ENST00000381150 NOL8Q76FK4 1167 aaKnown RBP17.1■□□□□ 0.33
SDC1-202ENST00000381150 COG3Q96JB2 828 aa17.1■□□□□ 0.33
SDC1-202ENST00000381150 ISY1Q9ULR0 285 aaKnown RBP17.1■□□□□ 0.33
SDC1-202ENST00000381150 PLCB2Q00722 1185 aa17.09■□□□□ 0.33
SDC1-202ENST00000381150 RRS1Q15050 365 aaKnown RBP17.09■□□□□ 0.33
SDC1-202ENST00000381150 PLEKHG3A1L390 1219 aa17.09■□□□□ 0.33
SDC1-202ENST00000381150 OFD1O75665 1012 aa17.09■□□□□ 0.33
SDC1-202ENST00000381150 BRPF1P55201 1214 aaPredicted RBP17.09■□□□□ 0.33
SDC1-202ENST00000381150 ARHGAP23Q9P227 1491 aa17.09■□□□□ 0.33
SDC1-202ENST00000381150 BAG4O95429 457 aaKnown RBP17.08■□□□□ 0.33
SDC1-202ENST00000381150 ZNF853P0CG23 659 aa17.08■□□□□ 0.33
SDC1-202ENST00000381150 ALDH1L2Q3SY69 923 aa17.08■□□□□ 0.33
SDC1-202ENST00000381150 SLIT1O75093 1534 aa17.08■□□□□ 0.32
SDC1-202ENST00000381150 CHD1LQ86WJ1 897 aa17.07■□□□□ 0.32
SDC1-202ENST00000381150 TSC1Q92574 1164 aa17.07■□□□□ 0.32
SDC1-202ENST00000381150 THUMPD2Q9BTF0 503 aaKnown RBP17.07■□□□□ 0.32
SDC1-202ENST00000381150 TTC21BQ7Z4L5 1316 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 PKP1Q13835 747 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 SMC5Q8IY18 1101 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 ACEP12821 1306 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 FAM177BA6PVY3 158 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 PRIM1P49642 420 aaKnown RBP17.06■□□□□ 0.32
SDC1-202ENST00000381150 SSH2Q76I76 1423 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 VAMP4O75379 141 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 JARID2Q92833 1246 aaPredicted RBP17.06■□□□□ 0.32
SDC1-202ENST00000381150 RBSNQ9H1K0 784 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 NALCNQ8IZF0 1738 aa17.06■□□□□ 0.32
SDC1-202ENST00000381150 OVOS2A0A0J9YW53 1432 aa17.05■□□□□ 0.32
SDC1-202ENST00000381150 OVOS2Q6IE36 1432 aa17.05■□□□□ 0.32
SDC1-202ENST00000381150 ZNF428Q96B54 188 aa17.05■□□□□ 0.32
SDC1-202ENST00000381150 SLC26A8Q96RN1 970 aa17.05■□□□□ 0.32
SDC1-202ENST00000381150 ZBTB40Q9NUA8 1239 aa17.05■□□□□ 0.32
SDC1-202ENST00000381150 SYCE3A1L190 88 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 HDAC1Q13547 482 aaPredicted RBP17.04■□□□□ 0.32
SDC1-202ENST00000381150 TBC1D9Q6ZT07 1266 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 USP6P35125 1406 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 ZSCAN23Q3MJ62 389 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 CIZ1Q9ULV3 898 aaPredicted RBP17.04■□□□□ 0.32
SDC1-202ENST00000381150 KIF16BQ96L93 1317 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 IFT57Q9NWB7 429 aa17.04■□□□□ 0.32
SDC1-202ENST00000381150 TSPYL6Q8N831 410 aa17.03■□□□□ 0.32
SDC1-202ENST00000381150 PEAK1Q9H792 1746 aa17.03■□□□□ 0.32
SDC1-202ENST00000381150 KLHL40Q2TBA0 621 aa17.02■□□□□ 0.32
SDC1-202ENST00000381150 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
SDC1-202ENST00000381150 TBX22Q9Y458 520 aa17.02■□□□□ 0.32
SDC1-202ENST00000381150 USP31Q70CQ4 1352 aa17.02■□□□□ 0.31
SDC1-202ENST00000381150 RGPD1P0DJD0 1748 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 IPO8O15397 1037 aaKnown RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 RBM25P49756 843 aaKnown RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 GNAI1P63096 354 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 EIF4A2Q14240 407 aaKnown RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 PTMSP20962 102 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 MRPL50Q8N5N7 158 aaKnown RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 SNX21Q969T3 373 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 AMOTL2Q9Y2J4 779 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 CFAP44Q96MT7 982 aa17.01■□□□□ 0.31
SDC1-202ENST00000381150 ZNF830Q96NB3 372 aaPredicted RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 BCL11BQ9C0K0 894 aaPredicted RBP17.01■□□□□ 0.31
SDC1-202ENST00000381150 NUTM2FA1L443 756 aa17■□□□□ 0.31
SDC1-202ENST00000381150 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
SDC1-202ENST00000381150 EID1Q9Y6B2 187 aa17■□□□□ 0.31
SDC1-202ENST00000381150 FER1L4A9Z1Z3 1794 aa17■□□□□ 0.31
SDC1-202ENST00000381150 PIK3R4Q99570 1358 aa17■□□□□ 0.31
SDC1-202ENST00000381150 PTCH1Q13635 1447 aa17■□□□□ 0.31
SDC1-202ENST00000381150 RGPD8O14715 1765 aaPredicted RBP16.99■□□□□ 0.31
SDC1-202ENST00000381150 FAM83GA6ND36 823 aa16.99■□□□□ 0.31
SDC1-202ENST00000381150 NUCB1Q02818 461 aa16.99■□□□□ 0.31
SDC1-202ENST00000381150 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
SDC1-202ENST00000381150 ZGPATQ8N5A5 531 aaKnown RBP16.99■□□□□ 0.31
SDC1-202ENST00000381150 ARHGAP45Q92619 1136 aa16.99■□□□□ 0.31
SDC1-202ENST00000381150 CBX1P83916 185 aa16.98■□□□□ 0.31
SDC1-202ENST00000381150 C8orf58Q8NAV2 365 aa16.97■□□□□ 0.31
SDC1-202ENST00000381150 KIF2CQ99661 725 aa16.97■□□□□ 0.31
SDC1-202ENST00000381150 ZBTB7BO15156 539 aaPredicted RBP16.97■□□□□ 0.31
SDC1-202ENST00000381150 LMOD3Q0VAK6 560 aa16.97■□□□□ 0.31
SDC1-202ENST00000381150 XRN1Q8IZH2 1706 aaKnown RBP16.96■□□□□ 0.31
SDC1-202ENST00000381150 IGSF3O75054 1194 aa16.96■□□□□ 0.31
SDC1-202ENST00000381150 DCTN1Q14203 1278 aa16.96■□□□□ 0.31
SDC1-202ENST00000381150 HSP90AB2PQ58FF8 381 aa16.96■□□□□ 0.31
SDC1-202ENST00000381150 DIP2AQ14689 1571 aa16.96■□□□□ 0.3
SDC1-202ENST00000381150 DDIT3P35638 169 aa16.95■□□□□ 0.3
SDC1-202ENST00000381150 SULT6B1Q6IMI4 303 aa16.95■□□□□ 0.3
SDC1-202ENST00000381150 C17orf53Q8N3J3 647 aaPredicted RBP16.95■□□□□ 0.3
SDC1-202ENST00000381150 NOL7Q9UMY1 257 aaKnown RBP16.95■□□□□ 0.3
SDC1-202ENST00000381150 TWISTNBQ3B726 338 aaPredicted RBP16.94■□□□□ 0.3
SDC1-202ENST00000381150 BMP2KLQ5H9B9 411 aa16.94■□□□□ 0.3
SDC1-202ENST00000381150 C16orf71Q8IYS4 520 aaPredicted RBP16.94■□□□□ 0.3
SDC1-202ENST00000381150 GDPD2Q9HCC8 539 aa16.94■□□□□ 0.3
SDC1-202ENST00000381150 NUCB2P80303 420 aa16.94■□□□□ 0.3
SDC1-202ENST00000381150 THEMISQ8N1K5 641 aaPredicted RBP16.94■□□□□ 0.3
SDC1-202ENST00000381150 MAP7D2Q96T17 732 aa16.94■□□□□ 0.3
SDC1-202ENST00000381150 ABCC4O15439 1325 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms