RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 PRKCSHP14314 528 aaPredicted RBP17.64■□□□□ 0.42
TCOF1-202ENST00000377797 FOXD4L6Q3SYB3 417 aaPredicted RBP17.64■□□□□ 0.42
TCOF1-202ENST00000377797 FOXD4L3Q6VB84 417 aaPredicted RBP17.64■□□□□ 0.42
TCOF1-202ENST00000377797 FSD1Q9BTV5 496 aa17.64■□□□□ 0.42
TCOF1-202ENST00000377797 DBF4Q9UBU7 674 aaPredicted RBP17.64■□□□□ 0.42
TCOF1-202ENST00000377797 PLEKHG3A1L390 1219 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 CABLES1Q8TDN4 633 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 ORAI2Q96SN7 254 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 IL13P35225 146 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 ADAMTS2O95450 1211 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 IFNL2Q8IZJ0 200 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 TNNQ9UQP3 1299 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 CROCC2H7BZ55 1655 aa17.64■□□□□ 0.41
TCOF1-202ENST00000377797 ABCA9Q8IUA7 1624 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 TSPYL6Q8N831 410 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 UNC13BO14795 1591 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 G3V3G9 751 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 DCAF8Q5TAQ9 597 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 PCDHB15Q9Y5E8 787 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 DDX11L8A8MPP1 907 aa17.63■□□□□ 0.41
TCOF1-202ENST00000377797 SHROOM2Q13796 1616 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 HTATSF1O43719 755 aaKnown RBP17.62■□□□□ 0.41
TCOF1-202ENST00000377797 APPP05067 770 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 DNAAF4Q8WXU2 420 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 ARHGAP45Q92619 1136 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 HOXC9P31274 260 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 KIF1BO60333 1816 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 KIF3AQ9Y496 699 aa17.62■□□□□ 0.41
TCOF1-202ENST00000377797 VAMP4O75379 141 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 VPS37DQ86XT2 251 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 SYAP1Q96A49 352 aaPredicted RBP17.61■□□□□ 0.41
TCOF1-202ENST00000377797 RTN4Q9NQC3 1192 aaKnown RBP17.61■□□□□ 0.41
TCOF1-202ENST00000377797 ARHGAP31Q2M1Z3 1444 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 ANXA1P04083 346 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 LARP1Q6PKG0 1096 aaKnown RBP17.61■□□□□ 0.41
TCOF1-202ENST00000377797 KDM5AP29375 1690 aaKnown RBP17.61■□□□□ 0.41
TCOF1-202ENST00000377797 RLBP1P12271 317 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 TMOD3Q9NYL9 352 aa17.61■□□□□ 0.41
TCOF1-202ENST00000377797 SMARCA5O60264 1052 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-202ENST00000377797 DNAJC2Q99543 621 aaKnown RBP17.6■□□□□ 0.41
TCOF1-202ENST00000377797 DDX49Q9Y6V7 483 aaKnown RBP17.6■□□□□ 0.41
TCOF1-202ENST00000377797 LRRFIP2Q9Y608 721 aaKnown RBP17.59■□□□□ 0.41
TCOF1-202ENST00000377797 GOLGA6L3A6NEY3 463 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 NEK4P51957 841 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 WASHC4Q2M389 1173 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 IP6K1Q92551 441 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 MRPL50Q8N5N7 158 aaKnown RBP17.59■□□□□ 0.41
TCOF1-202ENST00000377797 FAM184AQ8NB25 1140 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 FMNL2Q96PY5 1086 aa17.59■□□□□ 0.41
TCOF1-202ENST00000377797 TRIM35Q9UPQ4 493 aa17.58■□□□□ 0.41
TCOF1-202ENST00000377797 CLTCL1P53675 1640 aa17.58■□□□□ 0.41
TCOF1-202ENST00000377797 PI4KAP2A4QPH2 592 aa17.58■□□□□ 0.41
TCOF1-202ENST00000377797 PI4KAP1Q8N8J0 262 aa17.58■□□□□ 0.41
TCOF1-202ENST00000377797 MAP4K4O95819 1239 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-202ENST00000377797 HYPKQ9NX55 129 aa17.58■□□□□ 0.4
TCOF1-202ENST00000377797 STARD3NLO95772 234 aa17.58■□□□□ 0.4
TCOF1-202ENST00000377797 AACSQ86V21 672 aa17.58■□□□□ 0.4
TCOF1-202ENST00000377797 BLMP54132 1417 aaPredicted RBP17.58■□□□□ 0.4
TCOF1-202ENST00000377797 INSRP06213 1382 aa17.57■□□□□ 0.4
TCOF1-202ENST00000377797 CSPP1Q1MSJ5 1256 aa17.57■□□□□ 0.4
TCOF1-202ENST00000377797 AKAP4Q5JQC9 854 aa17.57■□□□□ 0.4
TCOF1-202ENST00000377797 MYD88Q99836 296 aa17.57■□□□□ 0.4
TCOF1-202ENST00000377797 H3BQV1 296 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 DNTTIP2Q5QJE6 756 aaKnown RBP17.56■□□□□ 0.4
TCOF1-202ENST00000377797 IFFO2Q5TF58 517 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 RABEP1Q15276 862 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 NUTM1Q86Y26 1132 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 KIF1BPQ96EK5 621 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 ATP6V1DQ9Y5K8 247 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 NFKBIBQ15653 356 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 CCDC57Q2TAC2 916 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 PLEKHG1Q9ULL1 1385 aa17.56■□□□□ 0.4
TCOF1-202ENST00000377797 SBNO1A3KN83 1393 aa17.55■□□□□ 0.4
TCOF1-202ENST00000377797 CNNM1Q9NRU3 951 aa17.55■□□□□ 0.4
TCOF1-202ENST00000377797 ZMYM4Q5VZL5 1548 aa17.55■□□□□ 0.4
TCOF1-202ENST00000377797 MEIS3Q99687 375 aa17.55■□□□□ 0.4
TCOF1-202ENST00000377797 PIK3R4Q99570 1358 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 TRDNQ13061 729 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 NUCB2P80303 420 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 CCDC85AQ96PX6 553 aaPredicted RBP17.54■□□□□ 0.4
TCOF1-202ENST00000377797 SLC39A6Q13433 755 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 RNF17Q9BXT8 1623 aaKnown RBP17.54■□□□□ 0.4
TCOF1-202ENST00000377797 HIP1O00291 1037 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 EXOC5O00471 708 aa17.54■□□□□ 0.4
TCOF1-202ENST00000377797 MX1P20591 662 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 HDAC1Q13547 482 aaPredicted RBP17.53■□□□□ 0.4
TCOF1-202ENST00000377797 CHMP4CQ96CF2 233 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 MAP3K2Q9Y2U5 619 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 ROBO2Q9HCK4 1378 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 SMC3Q9UQE7 1217 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 CHPF2Q9P2E5 772 aa17.53■□□□□ 0.4
TCOF1-202ENST00000377797 GSE1Q14687 1217 aa17.52■□□□□ 0.4
TCOF1-202ENST00000377797 CEP126Q9P2H0 1117 aa17.52■□□□□ 0.4
TCOF1-202ENST00000377797 CPLX2Q6PUV4 134 aaKnown RBP17.52■□□□□ 0.39
TCOF1-202ENST00000377797 SYNMO15061 1565 aa17.51■□□□□ 0.39
TCOF1-202ENST00000377797 ZCRB1Q8TBF4 217 aaKnown RBP17.51■□□□□ 0.39
TCOF1-202ENST00000377797 MAP3K5Q99683 1374 aa17.51■□□□□ 0.39
TCOF1-202ENST00000377797 RAB11FIP3O75154 756 aa17.51■□□□□ 0.39
TCOF1-202ENST00000377797 SNRPA1P09661 255 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms