RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 HSP90AB2PQ58FF8 381 aa29.17■■■□□ 2.26
VSX1-201ENST00000376707 RAPGEF4Q8WZA2 1011 aa29.17■■■□□ 2.26
VSX1-201ENST00000376707 CCER1Q8TC90 406 aaPredicted RBP29.16■■■□□ 2.26
VSX1-201ENST00000376707 CGNL1Q0VF96 1302 aa29.16■■■□□ 2.26
VSX1-201ENST00000376707 PRIM1P49642 420 aaKnown RBP29.15■■■□□ 2.26
VSX1-201ENST00000376707 POLR3GLQ9BT43 218 aa29.15■■■□□ 2.26
VSX1-201ENST00000376707 ATF5Q9Y2D1 282 aaPredicted RBP29.14■■■□□ 2.26
VSX1-201ENST00000376707 KAT6BQ8WYB5 2073 aa29.13■■■□□ 2.25
VSX1-201ENST00000376707 TATP17735 454 aaPredicted RBP29.13■■■□□ 2.25
VSX1-201ENST00000376707 LRRC4BQ9NT99 713 aa29.13■■■□□ 2.25
VSX1-201ENST00000376707 SLC27A3Q5K4L6 730 aa29.12■■■□□ 2.25
VSX1-201ENST00000376707 EMILIN1Q9Y6C2 1016 aa29.12■■■□□ 2.25
VSX1-201ENST00000376707 MTFR1LQ9H019 292 aa29.11■■■□□ 2.25
VSX1-201ENST00000376707 PAPPAQ13219 1627 aa29.11■■■□□ 2.25
VSX1-201ENST00000376707 PTGER2P43116 358 aa29.1■■■□□ 2.25
VSX1-201ENST00000376707 EIF4G2P78344 907 aaKnown RBP eCLIP29.1■■■□□ 2.25
VSX1-201ENST00000376707 DOT1LQ8TEK3 1739 aa29.09■■■□□ 2.25
VSX1-201ENST00000376707 DCAF8L1A6NGE4 600 aa29.09■■■□□ 2.25
VSX1-201ENST00000376707 PPM1GO15355 546 aaPredicted RBP29.09■■■□□ 2.25
VSX1-201ENST00000376707 SHANK3Q9BYB0 1731 aa29.08■■■□□ 2.25
VSX1-201ENST00000376707 ZNF827Q17R98 1081 aa29.08■■■□□ 2.25
VSX1-201ENST00000376707 NSD2O96028 1365 aa29.06■■■□□ 2.24
VSX1-201ENST00000376707 PCDH11XQ9BZA7 1347 aa29.05■■■□□ 2.24
VSX1-201ENST00000376707 PCDH11YQ9BZA8 1340 aa29.05■■■□□ 2.24
VSX1-201ENST00000376707 HSPA5P11021 654 aaKnown RBP29.05■■■□□ 2.24
VSX1-201ENST00000376707 AKT1S1Q96B36 256 aa29.04■■■□□ 2.24
VSX1-201ENST00000376707 KCNQ4P56696 695 aa29.02■■■□□ 2.24
VSX1-201ENST00000376707 WASHC2AQ641Q2 1341 aa29.01■■■□□ 2.23
VSX1-201ENST00000376707 SGIP1Q9BQI5 828 aa29■■■□□ 2.23
VSX1-201ENST00000376707 CCNL1Q9UK58 526 aaPredicted RBP29■■■□□ 2.23
VSX1-201ENST00000376707 TFCP2L1Q9NZI6 479 aa28.99■■■□□ 2.23
VSX1-201ENST00000376707 FHDC1Q9C0D6 1143 aaPredicted RBP28.98■■■□□ 2.23
VSX1-201ENST00000376707 POLKQ9UBT6 870 aa28.98■■■□□ 2.23
VSX1-201ENST00000376707 ANKRD26Q9UPS8 1709 aa28.97■■■□□ 2.23
VSX1-201ENST00000376707 TNNT2P45379 298 aaPredicted RBP28.97■■■□□ 2.23
VSX1-201ENST00000376707 CYP27B1O15528 508 aa28.96■■■□□ 2.23
VSX1-201ENST00000376707 SLC16A10Q8TF71 515 aa28.96■■■□□ 2.23
VSX1-201ENST00000376707 ARXQ96QS3 562 aa28.96■■■□□ 2.23
VSX1-201ENST00000376707 LY75O60449 1722 aa28.96■■■□□ 2.23
VSX1-201ENST00000376707 PNPLA7Q6ZV29 1317 aa28.95■■■□□ 2.23
VSX1-201ENST00000376707 NCAPD2Q15021 1401 aa28.95■■■□□ 2.23
VSX1-201ENST00000376707 YY1P25490 414 aa28.95■■■□□ 2.22
VSX1-201ENST00000376707 SYT17Q9BSW7 474 aa28.95■■■□□ 2.22
VSX1-201ENST00000376707 PANK3Q9H999 370 aa28.95■■■□□ 2.22
VSX1-201ENST00000376707 EYA1Q99502 592 aa28.94■■■□□ 2.22
VSX1-201ENST00000376707 SPG7Q9UQ90 795 aa28.94■■■□□ 2.22
VSX1-201ENST00000376707 MPRIPQ6WCQ1 1025 aa28.93■■■□□ 2.22
VSX1-201ENST00000376707 MAP2P11137 1827 aaKnown RBP28.91■■■□□ 2.22
VSX1-201ENST00000376707 QSER1Q2KHR3 1735 aa28.91■■■□□ 2.22
VSX1-201ENST00000376707 PKD1L3Q7Z443 1732 aa28.9■■■□□ 2.22
VSX1-201ENST00000376707 PALLDQ8WX93 1383 aa28.89■■■□□ 2.22
VSX1-201ENST00000376707 POLD1P28340 1107 aa28.89■■■□□ 2.22
VSX1-201ENST00000376707 EIF4A2Q14240 407 aaKnown RBP28.88■■■□□ 2.21
VSX1-201ENST00000376707 HMGB2P26583 209 aaKnown RBP28.87■■■□□ 2.21
VSX1-201ENST00000376707 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.87■■■□□ 2.21
VSX1-201ENST00000376707 MSH5O43196 834 aa28.86■■■□□ 2.21
VSX1-201ENST00000376707 NKX1-1Q15270 411 aaPredicted RBP28.86■■■□□ 2.21
VSX1-201ENST00000376707 SMARCC1Q92922 1105 aaPredicted RBP28.86■■■□□ 2.21
VSX1-201ENST00000376707 MAP3K5Q99683 1374 aa28.85■■■□□ 2.21
VSX1-201ENST00000376707 TOGARAM1Q9Y4F4 1720 aa28.84■■■□□ 2.21
VSX1-201ENST00000376707 TUBGCP6Q96RT7 1819 aa28.84■■■□□ 2.21
VSX1-201ENST00000376707 KLHL34Q8N239 644 aa28.83■■■□□ 2.21
VSX1-201ENST00000376707 PIGBQ92521 554 aa28.83■■■□□ 2.21
VSX1-201ENST00000376707 MORC1Q86VD1 984 aa28.82■■■□□ 2.2
VSX1-201ENST00000376707 IFNL2Q8IZJ0 200 aa28.82■■■□□ 2.2
VSX1-201ENST00000376707 COL23A1Q86Y22 540 aaPredicted RBP28.81■■■□□ 2.2
VSX1-201ENST00000376707 KNSTRNQ9Y448 316 aa28.81■■■□□ 2.2
VSX1-201ENST00000376707 PHKG2P15735 406 aa28.8■■■□□ 2.2
VSX1-201ENST00000376707 C5P01031 1676 aa28.8■■■□□ 2.2
VSX1-201ENST00000376707 IGSF1Q8N6C5 1336 aa28.79■■■□□ 2.2
VSX1-201ENST00000376707 TMOD3Q9NYL9 352 aa28.79■■■□□ 2.2
VSX1-201ENST00000376707 ITGB4P16144 1822 aa28.78■■■□□ 2.2
VSX1-201ENST00000376707 PLEKHG2Q9H7P9 1386 aa28.77■■■□□ 2.2
VSX1-201ENST00000376707 FLAD1Q8NFF5 587 aa28.77■■■□□ 2.2
VSX1-201ENST00000376707 COL24A1Q17RW2 1714 aa28.76■■■□□ 2.19
VSX1-201ENST00000376707 AK7Q96M32 723 aa28.75■■■□□ 2.19
VSX1-201ENST00000376707 MSL1Q68DK7 614 aa28.74■■■□□ 2.19
VSX1-201ENST00000376707 LOC102724428A0A0B4J2F2 783 aa28.72■■■□□ 2.19
VSX1-201ENST00000376707 SIK1P57059 783 aa28.72■■■□□ 2.19
VSX1-201ENST00000376707 GPR162Q16538 588 aa28.72■■■□□ 2.19
VSX1-201ENST00000376707 KIF7Q2M1P5 1343 aa28.71■■■□□ 2.19
VSX1-201ENST00000376707 PLEKHO1Q53GL0 409 aaPredicted RBP28.71■■■□□ 2.19
VSX1-201ENST00000376707 ASAP1Q9ULH1 1129 aa28.71■■■□□ 2.19
VSX1-201ENST00000376707 C4BP0C0L5 1744 aa28.71■■■□□ 2.19
VSX1-201ENST00000376707 TAF1LQ8IZX4 1826 aa28.71■■■□□ 2.19
VSX1-201ENST00000376707 HSP90AB1P08238 724 aaKnown RBP28.69■■■□□ 2.18
VSX1-201ENST00000376707 PHF14O94880 888 aa28.68■■■□□ 2.18
VSX1-201ENST00000376707 AMOTQ4VCS5 1084 aa28.68■■■□□ 2.18
VSX1-201ENST00000376707 PELP1Q8IZL8 1130 aaKnown RBP28.68■■■□□ 2.18
VSX1-201ENST00000376707 AMER1Q5JTC6 1135 aaPredicted RBP28.67■■■□□ 2.18
VSX1-201ENST00000376707 ZNF530Q6P9A1 599 aaPredicted RBP28.67■■■□□ 2.18
VSX1-201ENST00000376707 NLGN2Q8NFZ4 835 aa28.67■■■□□ 2.18
VSX1-201ENST00000376707 DCAF5Q96JK2 942 aa28.67■■■□□ 2.18
VSX1-201ENST00000376707 ATG3Q9NT62 314 aa28.67■■■□□ 2.18
VSX1-201ENST00000376707 ERVV-2B6SEH9 535 aa28.66■■■□□ 2.18
VSX1-201ENST00000376707 ATP6V1AP38606 617 aa28.66■■■□□ 2.18
VSX1-201ENST00000376707 AEBP1Q8IUX7 1158 aa28.66■■■□□ 2.18
VSX1-201ENST00000376707 LINC00116Q8NCU8 138 aa28.66■■■□□ 2.18
VSX1-201ENST00000376707 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.65■■■□□ 2.18
VSX1-201ENST00000376707 ITPK1Q13572 414 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms