RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 LARP6Q9BRS8 491 aaKnown RBP16.14■□□□□ 0.17
COL4A1-201ENST00000375820 NOL7Q9UMY1 257 aaKnown RBP16.14■□□□□ 0.17
COL4A1-201ENST00000375820 GUCY1B3Q02153 619 aa16.13■□□□□ 0.17
COL4A1-201ENST00000375820 CCDC113Q9H0I3 377 aa16.13■□□□□ 0.17
COL4A1-201ENST00000375820 CEP57L1Q8IYX8 460 aa16.13■□□□□ 0.17
COL4A1-201ENST00000375820 KLHL10Q6JEL2 608 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 PPM1FP49593 454 aaPredicted RBP16.12■□□□□ 0.17
COL4A1-201ENST00000375820 CCT4P50991 539 aaKnown RBP16.12■□□□□ 0.17
COL4A1-201ENST00000375820 ANKRD1Q15327 319 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 UPF3BQ9BZI7 483 aaKnown RBP16.12■□□□□ 0.17
COL4A1-201ENST00000375820 SYCE3A1L190 88 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 BRD4O60885 1362 aaPredicted RBP16.12■□□□□ 0.17
COL4A1-201ENST00000375820 SLC4A8Q2Y0W8 1093 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 UBA5Q9GZZ9 404 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 NUP62CLQ9H1M0 184 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 EXOC6BQ9Y2D4 811 aa16.12■□□□□ 0.17
COL4A1-201ENST00000375820 MINDY4BA8MYZ0 360 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 ZC3H6P61129 1189 aaKnown RBP16.11■□□□□ 0.17
COL4A1-201ENST00000375820 MYOM3Q5VTT5 1437 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 ANKRD18AQ8IVF6 992 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 ZNF219Q9P2Y4 722 aaPredicted RBP16.11■□□□□ 0.17
COL4A1-201ENST00000375820 ARHGAP5Q13017 1502 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 TNNT1P13805 278 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 THUMPD2Q9BTF0 503 aaKnown RBP16.11■□□□□ 0.17
COL4A1-201ENST00000375820 PRDM10Q9NQV6 1147 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 CCDC83Q8IWF9 413 aa16.11■□□□□ 0.17
COL4A1-201ENST00000375820 LUC7LQ9NQ29 371 aaKnown RBP16.11■□□□□ 0.17
COL4A1-201ENST00000375820 GBP2P32456 591 aaPredicted RBP16.1■□□□□ 0.17
COL4A1-201ENST00000375820 CFAP100Q494V2 611 aa16.1■□□□□ 0.17
COL4A1-201ENST00000375820 LIG1P18858 919 aa16.1■□□□□ 0.17
COL4A1-201ENST00000375820 TOP2AP11388 1531 aaKnown RBP16.1■□□□□ 0.17
COL4A1-201ENST00000375820 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
COL4A1-201ENST00000375820 CBFA2T2O43439 604 aa16.09■□□□□ 0.17
COL4A1-201ENST00000375820 SPG7Q9UQ90 795 aa16.09■□□□□ 0.17
COL4A1-201ENST00000375820 EPB41L2O43491 1005 aaKnown RBP16.09■□□□□ 0.17
COL4A1-201ENST00000375820 PPFIA3O75145 1194 aa16.09■□□□□ 0.17
COL4A1-201ENST00000375820 BMP2KQ9NSY1 1161 aaPredicted RBP16.09■□□□□ 0.17
COL4A1-201ENST00000375820 PTCD1O75127 700 aaKnown RBP16.09■□□□□ 0.17
COL4A1-201ENST00000375820 MTERF4Q7Z6M4 381 aaKnown RBP16.09■□□□□ 0.17
COL4A1-201ENST00000375820 AIDAQ96BJ3 306 aa16.09■□□□□ 0.17
COL4A1-201ENST00000375820 SCLT1Q96NL6 688 aa16.09■□□□□ 0.17
COL4A1-201ENST00000375820 ANKRD50Q9ULJ7 1429 aa16.08■□□□□ 0.17
COL4A1-201ENST00000375820 MVPQ14764 893 aaKnown RBP16.08■□□□□ 0.16
COL4A1-201ENST00000375820 ATF7IPQ6VMQ6 1270 aa16.08■□□□□ 0.16
COL4A1-201ENST00000375820 USHBP1Q8N6Y0 703 aa16.08■□□□□ 0.16
COL4A1-201ENST00000375820 HMGN5P82970 282 aaKnown RBP16.08■□□□□ 0.16
COL4A1-201ENST00000375820 GOPCQ9HD26 462 aa16.08■□□□□ 0.16
COL4A1-201ENST00000375820 ZSCAN25Q6NSZ9 544 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 CEP126Q9P2H0 1117 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 FANCD2Q9BXW9 1451 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 ERLIN1O75477 346 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 AAMPQ13685 434 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 TTC16Q8NEE8 873 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 FGD6Q6ZV73 1430 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 MCM10Q7L590 875 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 TAF4BQ92750 862 aa16.07■□□□□ 0.16
COL4A1-201ENST00000375820 METTL24Q5JXM2 366 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 PRPF40BQ6NWY9 871 aaKnown RBP16.06■□□□□ 0.16
COL4A1-201ENST00000375820 PSMD1Q99460 953 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 ARHGAP29Q52LW3 1261 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 BOLA2Q9H3K6 86 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 RAD54L2Q9Y4B4 1467 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 GOLGA6L10A0A0M3HER8 536 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 CPLX3Q8WVH0 158 aa16.06■□□□□ 0.16
COL4A1-201ENST00000375820 EIF3JO75822 258 aaKnown RBP16.06■□□□□ 0.16
COL4A1-201ENST00000375820 GOLGA6L7A0A1B0GV03 622 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 CDKL5O76039 1030 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 TMEM57Q8N5G2 664 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 BCCIPQ9P287 314 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL4A1-201ENST00000375820 CCDC184Q52MB2 194 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 PRDM11Q9NQV5 511 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 MACROD2A1Z1Q3 448 aa16.05■□□□□ 0.16
COL4A1-201ENST00000375820 EZRP15311 586 aaKnown RBP16.05■□□□□ 0.16
COL4A1-201ENST00000375820 POLR3DP05423 398 aaPredicted RBP16.05■□□□□ 0.16
COL4A1-201ENST00000375820 IGHMBP2P38935 993 aaKnown RBP16.05■□□□□ 0.16
COL4A1-201ENST00000375820 IMMTQ16891 758 aaKnown RBP16.05■□□□□ 0.16
COL4A1-201ENST00000375820 CCDC178Q5BJE1 867 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 WDR78Q5VTH9 848 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 CTNNBL1Q8WYA6 563 aaPredicted RBP16.04■□□□□ 0.16
COL4A1-201ENST00000375820 CFAP45Q9UL16 551 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 PDE3AQ14432 1141 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 CCDC144CPQ8IYA2 1237 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 DYDC1Q8WWB3 177 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 TRERF1Q96PN7 1200 aa16.04■□□□□ 0.16
COL4A1-201ENST00000375820 JAKMIP3Q5VZ66 844 aa16.03■□□□□ 0.16
COL4A1-201ENST00000375820 BACH2Q9BYV9 841 aa16.03■□□□□ 0.16
COL4A1-201ENST00000375820 CBX1P83916 185 aa16.03■□□□□ 0.16
COL4A1-201ENST00000375820 RAB11FIP4Q86YS3 637 aa16.03■□□□□ 0.16
COL4A1-201ENST00000375820 MYD88Q99836 296 aa16.03■□□□□ 0.16
COL4A1-201ENST00000375820 CRACR2BQ8N4Y2 399 aaPredicted RBP16.03■□□□□ 0.16
COL4A1-201ENST00000375820 ISM2Q6H9L7 571 aa16.02■□□□□ 0.16
COL4A1-201ENST00000375820 TRMT1Q9NXH9 659 aaKnown RBP16.02■□□□□ 0.16
COL4A1-201ENST00000375820 ANKIB1Q9P2G1 1089 aa16.02■□□□□ 0.16
COL4A1-201ENST00000375820 RRBP1Q9P2E9 1410 aaKnown RBP16.02■□□□□ 0.16
COL4A1-201ENST00000375820 MAP3K11Q16584 847 aa16.02■□□□□ 0.15
COL4A1-201ENST00000375820 MKNK2Q9HBH9 465 aa16.02■□□□□ 0.15
COL4A1-201ENST00000375820 SEC63Q9UGP8 760 aaKnown RBP16.02■□□□□ 0.15
COL4A1-201ENST00000375820 FYCO1Q9BQS8 1478 aa16.02■□□□□ 0.15
COL4A1-201ENST00000375820 ANAPC15P60006 121 aa16.02■□□□□ 0.15
COL4A1-201ENST00000375820 UBE4AQ14139 1066 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms