RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EMILIN1Q9Y6C2 1016 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PKP1Q13835 747 aa26.01■■□□□ 1.75
UPF3A-202ENST00000375299 ANKRD44Q8N8A2 993 aa26.01■■□□□ 1.75
UPF3A-202ENST00000375299 SETD1AO15047 1707 aaKnown RBP26■■□□□ 1.75
UPF3A-202ENST00000375299 ST18O60284 1047 aa26■■□□□ 1.75
UPF3A-202ENST00000375299 SPATA31D1Q6ZQQ2 1576 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 CASC1Q6TDU7 716 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 RBSNQ9H1K0 784 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 PDLIM2Q96JY6 352 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3CA6NJZ7 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3BA6NNM3 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3Q9UFD9 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 SDSP20132 328 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 TERF1P54274 439 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 RPAP2Q8IXW5 612 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 OTUD7AQ8TE49 926 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 CPSF1Q10570 1443 aaKnown RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 PKNOX2Q96KN3 472 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 PDCL3Q9H2J4 239 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 ZGPATQ8N5A5 531 aaKnown RBP25.96■■□□□ 1.75
UPF3A-202ENST00000375299 TSPOAP1O95153 1857 aa25.96■■□□□ 1.75
UPF3A-202ENST00000375299 RGS12O14924 1447 aa25.95■■□□□ 1.75
UPF3A-202ENST00000375299 FAM83GA6ND36 823 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 CEP85Q6P2H3 762 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 ZMYND15Q9H091 742 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 PRPF40AO75400 957 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 PRIM1P49642 420 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 GPT2Q8TD30 523 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 NOL7Q9UMY1 257 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 EDC4Q6P2E9 1401 aaKnown RBP25.94■■□□□ 1.74
UPF3A-202ENST00000375299 AATKQ6ZMQ8 1374 aa25.94■■□□□ 1.74
UPF3A-202ENST00000375299 ZDHHC9Q9Y397 364 aa25.93■■□□□ 1.74
UPF3A-202ENST00000375299 REC8O95072 547 aa25.93■■□□□ 1.74
UPF3A-202ENST00000375299 ZNF500O60304 480 aaPredicted RBP25.92■■□□□ 1.74
UPF3A-202ENST00000375299 RBM27Q9P2N5 1060 aaKnown RBP25.92■■□□□ 1.74
UPF3A-202ENST00000375299 DCTN1Q14203 1278 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 RTL1A6NKG5 1358 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 SMARCA5O60264 1052 aaPredicted RBP25.91■■□□□ 1.74
UPF3A-202ENST00000375299 MSH6P52701 1360 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 NME9Q86XW9 330 aa25.9■■□□□ 1.74
UPF3A-202ENST00000375299 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.9■■□□□ 1.74
UPF3A-202ENST00000375299 NRXN3Q9Y4C0 1643 aa25.9■■□□□ 1.74
UPF3A-202ENST00000375299 HAP1P54257 671 aaPredicted RBP25.89■■□□□ 1.74
UPF3A-202ENST00000375299 LRSAM1Q6UWE0 723 aa25.89■■□□□ 1.74
UPF3A-202ENST00000375299 WASLO00401 505 aaPredicted RBP25.89■■□□□ 1.73
UPF3A-202ENST00000375299 ERC2O15083 957 aa25.89■■□□□ 1.73
UPF3A-202ENST00000375299 MLECQ14165 292 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 TMEM63CQ9P1W3 806 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 ZRANB1Q9UGI0 708 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 APBB1O00213 710 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 METP08581 1390 aa25.86■■□□□ 1.73
UPF3A-202ENST00000375299 R3HCC1Q9Y3T6 440 aaKnown RBP25.86■■□□□ 1.73
UPF3A-202ENST00000375299 ZKSCAN5Q9Y2L8 839 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 PTPRCP08575 1304 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 MON2Q7Z3U7 1717 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 MEIS3Q99687 375 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 SYCE3A1L190 88 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 NRKQ7Z2Y5 1582 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 MBD3O95983 291 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 RRS1Q15050 365 aaKnown RBP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 KRT24Q2M2I5 525 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 COG3Q96JB2 828 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 MCM5P33992 734 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 NSFL1CQ9UNZ2 370 aaKnown RBP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 KIAA0232Q92628 1395 aa25.83■■□□□ 1.72
UPF3A-202ENST00000375299 XPCQ01831 940 aaPredicted RBP25.82■■□□□ 1.72
UPF3A-202ENST00000375299 TXNDC2Q86VQ3 553 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 OSBPL3Q9H4L5 887 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CPS1P31327 1500 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CHAMP1Q96JM3 812 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CHL1O00533 1208 aa25.81■■□□□ 1.72
UPF3A-202ENST00000375299 NUDT16Q96DE0 195 aaKnown RBP25.81■■□□□ 1.72
UPF3A-202ENST00000375299 CCDC39Q9UFE4 941 aa25.81■■□□□ 1.72
UPF3A-202ENST00000375299 HMMRO75330 724 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 TMX3Q96JJ7 454 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 CSPP1Q1MSJ5 1256 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 MCM2P49736 904 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 TUBGCP6Q96RT7 1819 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 C3P01024 1663 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 NEK4P51957 841 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 PDE1AP54750 535 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 NCKAP5LQ9HCH0 1330 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 BRD1O95696 1058 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 RBM10P98175 930 aaKnown RBP25.78■■□□□ 1.72
UPF3A-202ENST00000375299 AKAP12Q02952 1782 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 FOXD4L5Q5VV16 416 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-202ENST00000375299 FOXD4L4Q8WXT5 416 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-202ENST00000375299 CCDC61Q9Y6R9 512 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 MAP7D2Q96T17 732 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 TECPR2O15040 1411 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 SIRT1Q96EB6 747 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 UQCRHLA0A096LP55 91 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 UQCRHP07919 91 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 CUL4AQ13619 759 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 AEBP1Q8IUX7 1158 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 ITSN1Q15811 1721 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 SULT6B1Q6IMI4 303 aa25.74■■□□□ 1.71
UPF3A-202ENST00000375299 MCM10Q7L590 875 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms