RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 ZRANB1Q9UGI0 708 aa16.79■□□□□ 0.28
USP49-201ENST00000373006 WAPLQ7Z5K2 1190 aa16.79■□□□□ 0.28
USP49-201ENST00000373006 CFAP44Q96MT7 982 aa16.79■□□□□ 0.28
USP49-201ENST00000373006 MPNDQ8N594 471 aa16.79■□□□□ 0.28
USP49-201ENST00000373006 FOXD4L6Q3SYB3 417 aaPredicted RBP16.78■□□□□ 0.28
USP49-201ENST00000373006 FOXD4L3Q6VB84 417 aaPredicted RBP16.78■□□□□ 0.28
USP49-201ENST00000373006 PDLIM2Q96JY6 352 aa16.78■□□□□ 0.28
USP49-201ENST00000373006 BCL11BQ9C0K0 894 aaPredicted RBP16.78■□□□□ 0.28
USP49-201ENST00000373006 CWC22Q9HCG8 908 aaKnown RBP16.78■□□□□ 0.28
USP49-201ENST00000373006 NOL8Q76FK4 1167 aaKnown RBP16.78■□□□□ 0.28
USP49-201ENST00000373006 CASC1Q6TDU7 716 aa16.77■□□□□ 0.28
USP49-201ENST00000373006 NEXMIFQ5QGS0 1516 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 UQCRHLA0A096LP55 91 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 UQCRHP07919 91 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 RRS1Q15050 365 aaKnown RBP16.76■□□□□ 0.27
USP49-201ENST00000373006 TPRNQ4KMQ1 711 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 ANKRD44Q8N8A2 993 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 IL13P35225 146 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 NEK4P51957 841 aa16.76■□□□□ 0.27
USP49-201ENST00000373006 YTHDC2Q9H6S0 1430 aaKnown RBP16.75■□□□□ 0.27
USP49-201ENST00000373006 ZNF500O60304 480 aaPredicted RBP16.75■□□□□ 0.27
USP49-201ENST00000373006 HS1BP3Q53T59 392 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 CEP85Q6P2H3 762 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 LRSAM1Q6UWE0 723 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 NME9Q86XW9 330 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 ZKSCAN5Q9Y2L8 839 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
USP49-201ENST00000373006 TSHZ3Q63HK5 1081 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 MEIS3Q99687 375 aa16.75■□□□□ 0.27
USP49-201ENST00000373006 ABCC3O15438 1527 aa16.74■□□□□ 0.27
USP49-201ENST00000373006 ZFYVE9O95405 1425 aa16.74■□□□□ 0.27
USP49-201ENST00000373006 PTPRMP28827 1452 aa16.73■□□□□ 0.27
USP49-201ENST00000373006 REC8O95072 547 aa16.73■□□□□ 0.27
USP49-201ENST00000373006 FRMPD1Q5SYB0 1578 aa16.73■□□□□ 0.27
USP49-201ENST00000373006 ARHGAP31Q2M1Z3 1444 aa16.72■□□□□ 0.27
USP49-201ENST00000373006 ERC2O15083 957 aa16.72■□□□□ 0.27
USP49-201ENST00000373006 RPAP2Q8IXW5 612 aaPredicted RBP16.72■□□□□ 0.27
USP49-201ENST00000373006 TMX3Q96JJ7 454 aa16.72■□□□□ 0.27
USP49-201ENST00000373006 PRDM4Q9UKN5 801 aa16.72■□□□□ 0.27
USP49-201ENST00000373006 KNDC1Q76NI1 1749 aa16.72■□□□□ 0.27
USP49-201ENST00000373006 SIGLEC1Q9BZZ2 1709 aa16.71■□□□□ 0.27
USP49-201ENST00000373006 PDIA4P13667 645 aaKnown RBP16.71■□□□□ 0.27
USP49-201ENST00000373006 TERF1P54274 439 aa16.71■□□□□ 0.27
USP49-201ENST00000373006 GDPD2Q9HCC8 539 aa16.71■□□□□ 0.27
USP49-201ENST00000373006 NCKAP5LQ9HCH0 1330 aa16.71■□□□□ 0.27
USP49-201ENST00000373006 SOX12O15370 315 aa16.71■□□□□ 0.26
USP49-201ENST00000373006 PTMAP06454 111 aaKnown RBP16.71■□□□□ 0.26
USP49-201ENST00000373006 LMOD3Q0VAK6 560 aa16.7■□□□□ 0.26
USP49-201ENST00000373006 SLC4A10Q6U841 1118 aa16.7■□□□□ 0.26
USP49-201ENST00000373006 MCM10Q7L590 875 aa16.7■□□□□ 0.26
USP49-201ENST00000373006 ATP10DQ9P241 1426 aa16.7■□□□□ 0.26
USP49-201ENST00000373006 JARID2Q92833 1246 aaPredicted RBP16.7■□□□□ 0.26
USP49-201ENST00000373006 MSH6P52701 1360 aa16.7■□□□□ 0.26
USP49-201ENST00000373006 DNTTIP2Q5QJE6 756 aaKnown RBP16.69■□□□□ 0.26
USP49-201ENST00000373006 AEBP1Q8IUX7 1158 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 TSC1Q92574 1164 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 RIMS2Q9UQ26 1411 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 NUTM2FA1L443 756 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 SLC52A1Q9NWF4 448 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 CCDC39Q9UFE4 941 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 POGZQ7Z3K3 1410 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 RTL1A6NKG5 1358 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 MIS18AQ9NYP9 233 aa16.69■□□□□ 0.26
USP49-201ENST00000373006 FAM177BA6PVY3 158 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 PALD1Q9ULE6 856 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 HECW2Q9P2P5 1572 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 F6X3S4 739 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 IGSF3O75054 1194 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 EXOC6BQ9Y2D4 811 aa16.68■□□□□ 0.26
USP49-201ENST00000373006 SLC4A2P04920 1241 aa16.67■□□□□ 0.26
USP49-201ENST00000373006 PDE1AP54750 535 aa16.67■□□□□ 0.26
USP49-201ENST00000373006 ZNF830Q96NB3 372 aaPredicted RBP16.67■□□□□ 0.26
USP49-201ENST00000373006 ANKRD26Q9UPS8 1709 aa16.67■□□□□ 0.26
USP49-201ENST00000373006 CSPP1Q1MSJ5 1256 aa16.67■□□□□ 0.26
USP49-201ENST00000373006 GADD45BO75293 160 aaPredicted RBP16.66■□□□□ 0.26
USP49-201ENST00000373006 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.66■□□□□ 0.26
USP49-201ENST00000373006 UPF3BQ9BZI7 483 aaKnown RBP16.66■□□□□ 0.26
USP49-201ENST00000373006 MBD3O95983 291 aa16.66■□□□□ 0.26
USP49-201ENST00000373006 CDC42BPGQ6DT37 1551 aa16.66■□□□□ 0.26
USP49-201ENST00000373006 SULT6B1Q6IMI4 303 aa16.66■□□□□ 0.26
USP49-201ENST00000373006 ARHGEF40Q8TER5 1519 aa16.66■□□□□ 0.26
USP49-201ENST00000373006 REREQ9P2R6 1566 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 BRD1O95696 1058 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 RILPL2Q969X0 211 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 TSPY26PQ9H489 355 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 ANO2Q9NQ90 1003 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 MAP2P11137 1827 aaKnown RBP16.65■□□□□ 0.26
USP49-201ENST00000373006 PIK3C2BO00750 1634 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 KIF24Q5T7B8 1368 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 MLH3Q9UHC1 1453 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 BBXQ8WY36 941 aaPredicted RBP16.65■□□□□ 0.26
USP49-201ENST00000373006 COG3Q96JB2 828 aa16.65■□□□□ 0.26
USP49-201ENST00000373006 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.65■□□□□ 0.26
USP49-201ENST00000373006 RGS12O14924 1447 aa16.64■□□□□ 0.25
USP49-201ENST00000373006 TRIM6-TRIM34B2RNG4 842 aa16.64■□□□□ 0.25
USP49-201ENST00000373006 MCM5P33992 734 aa16.64■□□□□ 0.25
USP49-201ENST00000373006 G2E3Q7L622 706 aa16.64■□□□□ 0.25
USP49-201ENST00000373006 TXNDC2Q86VQ3 553 aa16.64■□□□□ 0.25
USP49-201ENST00000373006 SASS6Q6UVJ0 657 aa16.63■□□□□ 0.25
USP49-201ENST00000373006 MAP7D2Q96T17 732 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms