RNA–Protein interactions for RNA: ENST00000371748.9

LHX3-202, Transcript of LIM homeobox 3, humanhuman

TSL 1 (best) BASIC

Gene LHX3, Length 2,365 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3-202ENST00000371748 NFAT5O94916 1531 aa25.19■■□□□ 1.62
LHX3-202ENST00000371748 RTF1Q92541 710 aaKnown RBP25.19■■□□□ 1.62
LHX3-202ENST00000371748 ARHGAP45Q92619 1136 aa25.19■■□□□ 1.62
LHX3-202ENST00000371748 GAS2L2Q8NHY3 880 aa25.18■■□□□ 1.62
LHX3-202ENST00000371748 RTL1A6NKG5 1358 aa25.17■■□□□ 1.62
LHX3-202ENST00000371748 MIS18AQ9NYP9 233 aa25.17■■□□□ 1.62
LHX3-202ENST00000371748 ZBTB7CA1YPR0 619 aa25.17■■□□□ 1.62
LHX3-202ENST00000371748 PLEKHG5O94827 1062 aa25.16■■□□□ 1.62
LHX3-202ENST00000371748 USHBP1Q8N6Y0 703 aa25.16■■□□□ 1.62
LHX3-202ENST00000371748 HDAC1Q13547 482 aaPredicted RBP25.15■■□□□ 1.62
LHX3-202ENST00000371748 IP6K1Q92551 441 aa25.15■■□□□ 1.62
LHX3-202ENST00000371748 VIRMAQ69YN4 1812 aaKnown RBP25.13■■□□□ 1.61
LHX3-202ENST00000371748 KIAA0232Q92628 1395 aa25.13■■□□□ 1.61
LHX3-202ENST00000371748 ABCC4O15439 1325 aa25.13■■□□□ 1.61
LHX3-202ENST00000371748 LMOD2Q6P5Q4 547 aa25.12■■□□□ 1.61
LHX3-202ENST00000371748 KCNH5Q8NCM2 988 aa25.12■■□□□ 1.61
LHX3-202ENST00000371748 C19orf44Q9H6X5 657 aa25.11■■□□□ 1.61
LHX3-202ENST00000371748 TSPYL4Q9UJ04 414 aa25.11■■□□□ 1.61
LHX3-202ENST00000371748 C1orf167Q5SNV9 1468 aa25.11■■□□□ 1.61
LHX3-202ENST00000371748 ZBTB7BO15156 539 aaPredicted RBP25.11■■□□□ 1.61
LHX3-202ENST00000371748 STRCP1A6NGW2 1772 aa25.1■■□□□ 1.61
LHX3-202ENST00000371748 GNAT3A8MTJ3 354 aa25.1■■□□□ 1.61
LHX3-202ENST00000371748 API5Q9BZZ5 524 aaKnown RBP25.1■■□□□ 1.61
LHX3-202ENST00000371748 RGPD2P0DJD1 1756 aa25.1■■□□□ 1.61
LHX3-202ENST00000371748 TRPM3Q9HCF6 1732 aaPredicted RBP25.09■■□□□ 1.61
LHX3-202ENST00000371748 USP35Q9P2H5 1018 aa25.09■■□□□ 1.61
LHX3-202ENST00000371748 HAP1P54257 671 aaPredicted RBP25.09■■□□□ 1.61
LHX3-202ENST00000371748 LRRC37A3O60309 1634 aa25.08■■□□□ 1.61
LHX3-202ENST00000371748 GCP02774 474 aa25.08■■□□□ 1.61
LHX3-202ENST00000371748 NBPF6Q5VWK0 638 aa25.08■■□□□ 1.61
LHX3-202ENST00000371748 KRT28Q7Z3Y7 464 aa25.08■■□□□ 1.61
LHX3-202ENST00000371748 NBPF4Q96M43 638 aa25.08■■□□□ 1.61
LHX3-202ENST00000371748 HTATSF1O43719 755 aaKnown RBP25.08■■□□□ 1.6
LHX3-202ENST00000371748 C1orf115Q9H7X2 142 aa25.08■■□□□ 1.6
LHX3-202ENST00000371748 KIF1AQ12756 1690 aa25.07■■□□□ 1.6
LHX3-202ENST00000371748 PHRF1Q9P1Y6 1649 aaKnown RBP25.07■■□□□ 1.6
LHX3-202ENST00000371748 MSH6P52701 1360 aa25.06■■□□□ 1.6
LHX3-202ENST00000371748 TMEM94Q12767 1356 aa25.06■■□□□ 1.6
LHX3-202ENST00000371748 HSPA2P54652 639 aa25.06■■□□□ 1.6
LHX3-202ENST00000371748 MAP3K5Q99683 1374 aa25.06■■□□□ 1.6
LHX3-202ENST00000371748 SLIT3O75094 1523 aa25.06■■□□□ 1.6
LHX3-202ENST00000371748 SMC5Q8IY18 1101 aa25.05■■□□□ 1.6
LHX3-202ENST00000371748 IL17REQ8NFR9 667 aa25.04■■□□□ 1.6
LHX3-202ENST00000371748 LRRC59Q96AG4 307 aaKnown RBP25.04■■□□□ 1.6
LHX3-202ENST00000371748 CHMP4BQ9H444 224 aaKnown RBP25.04■■□□□ 1.6
LHX3-202ENST00000371748 ARHGEF25Q86VW2 580 aa25.03■■□□□ 1.6
LHX3-202ENST00000371748 ATF3P18847 181 aa25.03■■□□□ 1.6
LHX3-202ENST00000371748 RGS12O14924 1447 aa25.03■■□□□ 1.6
LHX3-202ENST00000371748 SLC4A2P04920 1241 aa25.01■■□□□ 1.59
LHX3-202ENST00000371748 MST1RQ04912 1400 aa25.01■■□□□ 1.59
LHX3-202ENST00000371748 USP19O94966 1318 aa25.01■■□□□ 1.59
LHX3-202ENST00000371748 DDX17Q92841 729 aaKnown RBP25■■□□□ 1.59
LHX3-202ENST00000371748 SEC24BO95487 1268 aa24.99■■□□□ 1.59
LHX3-202ENST00000371748 DDRGK1Q96HY6 314 aa24.99■■□□□ 1.59
LHX3-202ENST00000371748 INTS3Q68E01 1043 aaKnown RBP24.98■■□□□ 1.59
LHX3-202ENST00000371748 PTPRCP08575 1304 aa24.98■■□□□ 1.59
LHX3-202ENST00000371748 ALS2Q96Q42 1657 aa24.97■■□□□ 1.59
LHX3-202ENST00000371748 TAF7Q15545 349 aaPredicted RBP24.96■■□□□ 1.59
LHX3-202ENST00000371748 SIRT2Q8IXJ6 389 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 NUCB1Q02818 461 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 G2E3Q7L622 706 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 ANKRD24Q8TF21 1146 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 AXIN2Q9Y2T1 843 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 RGPD5Q99666 1765 aa24.96■■□□□ 1.59
LHX3-202ENST00000371748 LNPKQ9C0E8 428 aa24.94■■□□□ 1.58
LHX3-202ENST00000371748 DCCP43146 1447 aa24.94■■□□□ 1.58
LHX3-202ENST00000371748 MED1Q15648 1581 aaPredicted RBP24.93■■□□□ 1.58
LHX3-202ENST00000371748 ZC3H6P61129 1189 aaKnown RBP24.93■■□□□ 1.58
LHX3-202ENST00000371748 NECTIN2Q92692 538 aa24.93■■□□□ 1.58
LHX3-202ENST00000371748 LGR6Q9HBX8 967 aa24.93■■□□□ 1.58
LHX3-202ENST00000371748 FAM208AQ9UK61 1670 aaKnown RBP24.92■■□□□ 1.58
LHX3-202ENST00000371748 CHD1LQ86WJ1 897 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 CEMIPQ8WUJ3 1361 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 NCOA3Q9Y6Q9 1424 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 IL27Q8NEV9 243 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 GCC1Q96CN9 775 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 STK31Q9BXU1 1019 aa24.91■■□□□ 1.58
LHX3-202ENST00000371748 ZNF530Q6P9A1 599 aaPredicted RBP24.9■■□□□ 1.58
LHX3-202ENST00000371748 CADPS2Q86UW7 1296 aa24.9■■□□□ 1.58
LHX3-202ENST00000371748 BABAM1Q9NWV8 329 aa24.9■■□□□ 1.58
LHX3-202ENST00000371748 F6X3S4 739 aa24.9■■□□□ 1.58
LHX3-202ENST00000371748 ANKRD45Q5TZF3 282 aa24.9■■□□□ 1.58
LHX3-202ENST00000371748 LMO7Q8WWI1 1683 aa24.9■■□□□ 1.58
LHX3-202ENST00000371748 PLEKHO1Q53GL0 409 aaPredicted RBP24.89■■□□□ 1.58
LHX3-202ENST00000371748 NCAPD2Q15021 1401 aa24.89■■□□□ 1.58
LHX3-202ENST00000371748 CCDC30Q5VVM6 783 aa24.89■■□□□ 1.57
LHX3-202ENST00000371748 SLC4A10Q6U841 1118 aa24.88■■□□□ 1.57
LHX3-202ENST00000371748 XIRP1Q702N8 1843 aaKnown RBP24.88■■□□□ 1.57
LHX3-202ENST00000371748 AKAP4Q5JQC9 854 aa24.88■■□□□ 1.57
LHX3-202ENST00000371748 CAMTA1Q9Y6Y1 1673 aa24.87■■□□□ 1.57
LHX3-202ENST00000371748 PXDNQ92626 1479 aa24.87■■□□□ 1.57
LHX3-202ENST00000371748 SLC4A3P48751 1232 aa24.87■■□□□ 1.57
LHX3-202ENST00000371748 MEIS3Q99687 375 aa24.87■■□□□ 1.57
LHX3-202ENST00000371748 MPRIPQ6WCQ1 1025 aa24.87■■□□□ 1.57
LHX3-202ENST00000371748 ATP10DQ9P241 1426 aa24.86■■□□□ 1.57
LHX3-202ENST00000371748 CACNA1FO60840 1977 aa24.86■■□□□ 1.57
LHX3-202ENST00000371748 AMOTQ4VCS5 1084 aa24.86■■□□□ 1.57
LHX3-202ENST00000371748 ERBB3P21860 1342 aa24.85■■□□□ 1.57
LHX3-202ENST00000371748 NPHP3Q7Z494 1330 aa24.85■■□□□ 1.57
LHX3-202ENST00000371748 FLIIQ13045 1269 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms