RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 ZCRB1Q8TBF4 217 aaKnown RBP20.35■□□□□ 0.85
SMPDL3A-201ENST00000368440 DIAPH1O60610 1272 aaKnown RBP20.35■□□□□ 0.85
SMPDL3A-201ENST00000368440 TRIM37O94972 964 aa20.35■□□□□ 0.85
SMPDL3A-201ENST00000368440 DDX54Q8TDD1 881 aaKnown RBP20.35■□□□□ 0.85
SMPDL3A-201ENST00000368440 DOT1LQ8TEK3 1739 aa20.34■□□□□ 0.85
SMPDL3A-201ENST00000368440 BCL9O00512 1426 aa20.33■□□□□ 0.85
SMPDL3A-201ENST00000368440 NHSQ6T4R5 1651 aa20.33■□□□□ 0.85
SMPDL3A-201ENST00000368440 KDRP35968 1356 aa20.32■□□□□ 0.84
SMPDL3A-201ENST00000368440 SULT6B1Q6IMI4 303 aa20.32■□□□□ 0.84
SMPDL3A-201ENST00000368440 CCDC125Q86Z20 511 aa20.32■□□□□ 0.84
SMPDL3A-201ENST00000368440 PTF1AQ7RTS3 328 aa20.31■□□□□ 0.84
SMPDL3A-201ENST00000368440 RALBP1Q15311 655 aa20.3■□□□□ 0.84
SMPDL3A-201ENST00000368440 HMOX1P09601 288 aa20.3■□□□□ 0.84
SMPDL3A-201ENST00000368440 DEFB132Q7Z7B7 95 aa20.3■□□□□ 0.84
SMPDL3A-201ENST00000368440 CFAP53Q96M91 514 aa20.3■□□□□ 0.84
SMPDL3A-201ENST00000368440 TOGARAM1Q9Y4F4 1720 aa20.3■□□□□ 0.84
SMPDL3A-201ENST00000368440 PCDH11XQ9BZA7 1347 aa20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 PCDH11YQ9BZA8 1340 aa20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 CYP27B1O15528 508 aa20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 SF3B2Q13435 895 aaKnown RBP20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 ACSBG1Q96GR2 724 aa20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 U2SURPO15042 1029 aaKnown RBP20.28■□□□□ 0.84
SMPDL3A-201ENST00000368440 KCNQ2O43526 872 aa20.27■□□□□ 0.84
SMPDL3A-201ENST00000368440 PRKRIP1Q9H875 184 aaPredicted RBP20.27■□□□□ 0.84
SMPDL3A-201ENST00000368440 BTAF1O14981 1849 aa20.27■□□□□ 0.83
SMPDL3A-201ENST00000368440 MYBBP1AQ9BQG0 1328 aaKnown RBP20.26■□□□□ 0.83
SMPDL3A-201ENST00000368440 SPG7Q9UQ90 795 aa20.26■□□□□ 0.83
SMPDL3A-201ENST00000368440 PLEKHG2Q9H7P9 1386 aa20.25■□□□□ 0.83
SMPDL3A-201ENST00000368440 KAT6BQ8WYB5 2073 aa20.25■□□□□ 0.83
SMPDL3A-201ENST00000368440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.25■□□□□ 0.83
SMPDL3A-201ENST00000368440 APBA3O96018 575 aa20.24■□□□□ 0.83
SMPDL3A-201ENST00000368440 EN1Q05925 392 aaPredicted RBP20.24■□□□□ 0.83
SMPDL3A-201ENST00000368440 BCL11BQ9C0K0 894 aaPredicted RBP20.24■□□□□ 0.83
SMPDL3A-201ENST00000368440 ITGB4P16144 1822 aa20.24■□□□□ 0.83
SMPDL3A-201ENST00000368440 BAG6P46379 1132 aa20.24■□□□□ 0.83
SMPDL3A-201ENST00000368440 RREB1Q92766 1687 aa20.23■□□□□ 0.83
SMPDL3A-201ENST00000368440 RGPD3A6NKT7 1758 aaPredicted RBP20.23■□□□□ 0.83
SMPDL3A-201ENST00000368440 RGPD4Q7Z3J3 1758 aa20.23■□□□□ 0.83
SMPDL3A-201ENST00000368440 PHKG2P15735 406 aa20.22■□□□□ 0.83
SMPDL3A-201ENST00000368440 PLEKHO1Q53GL0 409 aaPredicted RBP20.21■□□□□ 0.83
SMPDL3A-201ENST00000368440 EZH2Q15910 746 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 ZNF530Q6P9A1 599 aaPredicted RBP20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 NUDCQ9Y266 331 aa20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 VIRMAQ69YN4 1812 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 PRIM1P49642 420 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 AMOTQ4VCS5 1084 aa20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 IFNL2Q8IZJ0 200 aa20.2■□□□□ 0.82
SMPDL3A-201ENST00000368440 NUP188Q5SRE5 1749 aa20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 U2AF1L5P0DN76 240 aaPredicted RBP20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 U2AF1Q01081 240 aaKnown RBP eCLIP20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 NKX1-1Q15270 411 aaPredicted RBP20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 SYTL4Q96C24 671 aaPredicted RBP20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 CAMKK2Q96RR4 588 aa20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 RSPH6AQ9H0K4 717 aa20.19■□□□□ 0.82
SMPDL3A-201ENST00000368440 KDM6AO15550 1401 aaPredicted RBP20.17■□□□□ 0.82
SMPDL3A-201ENST00000368440 SCN11AQ9UI33 1791 aa20.17■□□□□ 0.82
SMPDL3A-201ENST00000368440 PRKAR2BP31323 418 aa20.16■□□□□ 0.82
SMPDL3A-201ENST00000368440 MTHFSDQ2M296 383 aaKnown RBP20.16■□□□□ 0.82
SMPDL3A-201ENST00000368440 PLSCR1O15162 318 aa20.15■□□□□ 0.82
SMPDL3A-201ENST00000368440 LY75O60449 1722 aa20.14■□□□□ 0.82
SMPDL3A-201ENST00000368440 PHACTR3Q96KR7 559 aa20.14■□□□□ 0.81
SMPDL3A-201ENST00000368440 C1orf141Q5JVX7 400 aa20.13■□□□□ 0.81
SMPDL3A-201ENST00000368440 ADAMTS7Q9UKP4 1686 aa20.13■□□□□ 0.81
SMPDL3A-201ENST00000368440 FCHSD2O94868 740 aa20.12■□□□□ 0.81
SMPDL3A-201ENST00000368440 MPRIPQ6WCQ1 1025 aa20.12■□□□□ 0.81
SMPDL3A-201ENST00000368440 PROM2Q8N271 834 aa20.12■□□□□ 0.81
SMPDL3A-201ENST00000368440 AKAP4Q5JQC9 854 aa20.11■□□□□ 0.81
SMPDL3A-201ENST00000368440 DCAF5Q96JK2 942 aa20.11■□□□□ 0.81
SMPDL3A-201ENST00000368440 ANP32CO43423 234 aa20.11■□□□□ 0.81
SMPDL3A-201ENST00000368440 CCDC184Q52MB2 194 aa20.11■□□□□ 0.81
SMPDL3A-201ENST00000368440 DIEXFQ68CQ4 756 aaKnown RBP20.11■□□□□ 0.81
SMPDL3A-201ENST00000368440 HSP90AB1P08238 724 aaKnown RBP20.1■□□□□ 0.81
SMPDL3A-201ENST00000368440 PIGBQ92521 554 aa20.1■□□□□ 0.81
SMPDL3A-201ENST00000368440 DLG5Q8TDM6 1919 aa20.09■□□□□ 0.81
SMPDL3A-201ENST00000368440 TXNRD1Q16881 649 aa20.09■□□□□ 0.81
SMPDL3A-201ENST00000368440 PLEKHF1Q96S99 279 aa20.08■□□□□ 0.81
SMPDL3A-201ENST00000368440 LGR6Q9HBX8 967 aa20.08■□□□□ 0.81
SMPDL3A-201ENST00000368440 TMOD3Q9NYL9 352 aa20.08■□□□□ 0.81
SMPDL3A-201ENST00000368440 GAS2L2Q8NHY3 880 aa20.07■□□□□ 0.8
SMPDL3A-201ENST00000368440 PAPPAQ13219 1627 aa20.07■□□□□ 0.8
SMPDL3A-201ENST00000368440 MAP3K5Q99683 1374 aa20.07■□□□□ 0.8
SMPDL3A-201ENST00000368440 MRC1P22897 1456 aa20.07■□□□□ 0.8
SMPDL3A-201ENST00000368440 ERVV-2B6SEH9 535 aa20.07■□□□□ 0.8
SMPDL3A-201ENST00000368440 RNMTO43148 476 aaKnown RBP20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 LRRC4BQ9NT99 713 aa20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 PALLDQ8WX93 1383 aa20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 SIPA1L3O60292 1781 aaPredicted RBP20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 KCNQ4P56696 695 aa20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 CABP4P57796 275 aa20.05■□□□□ 0.8
SMPDL3A-201ENST00000368440 ASAP1Q9ULH1 1129 aa20.04■□□□□ 0.8
SMPDL3A-201ENST00000368440 TAF1LQ8IZX4 1826 aa20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 GNAT3A8MTJ3 354 aa20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 WDR43Q15061 677 aaKnown RBP eCLIP20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 ANO8Q9HCE9 1232 aaPredicted RBP20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 C5P01031 1676 aa20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 NFATC2IPQ8NCF5 419 aa20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 ADAMTS8Q9UP79 889 aa20.03■□□□□ 0.8
SMPDL3A-201ENST00000368440 IL17REQ8NFR9 667 aa20.02■□□□□ 0.8
SMPDL3A-201ENST00000368440 ATG3Q9NT62 314 aa20.02■□□□□ 0.8
SMPDL3A-201ENST00000368440 PSDA5PKW4 1024 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms