RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 KNSTRNQ9Y448 316 aa26.01■■□□□ 1.75
CKS1B-203ENST00000368439 PER1O15534 1290 aaPredicted RBP26■■□□□ 1.75
CKS1B-203ENST00000368439 KAT6BQ8WYB5 2073 aa25.99■■□□□ 1.75
CKS1B-203ENST00000368439 PSDA5PKW4 1024 aaPredicted RBP25.98■■□□□ 1.75
CKS1B-203ENST00000368439 ZCRB1Q8TBF4 217 aaKnown RBP25.98■■□□□ 1.75
CKS1B-203ENST00000368439 DDX54Q8TDD1 881 aaKnown RBP25.98■■□□□ 1.75
CKS1B-203ENST00000368439 BTAF1O14981 1849 aa25.98■■□□□ 1.75
CKS1B-203ENST00000368439 ACSBG1Q96GR2 724 aa25.97■■□□□ 1.75
CKS1B-203ENST00000368439 MORC1Q86VD1 984 aa25.96■■□□□ 1.75
CKS1B-203ENST00000368439 PROM2Q8N271 834 aa25.96■■□□□ 1.75
CKS1B-203ENST00000368439 PKD1L3Q7Z443 1732 aa25.95■■□□□ 1.74
CKS1B-203ENST00000368439 DOT1LQ8TEK3 1739 aa25.95■■□□□ 1.74
CKS1B-203ENST00000368439 RAPGEF4Q8WZA2 1011 aa25.95■■□□□ 1.74
CKS1B-203ENST00000368439 EYA1Q99502 592 aa25.95■■□□□ 1.74
CKS1B-203ENST00000368439 R3HDM1Q15032 1099 aaKnown RBP25.94■■□□□ 1.74
CKS1B-203ENST00000368439 TATP17735 454 aaPredicted RBP25.93■■□□□ 1.74
CKS1B-203ENST00000368439 EIF4A2Q14240 407 aaKnown RBP25.93■■□□□ 1.74
CKS1B-203ENST00000368439 LRP5O75197 1615 aa25.89■■□□□ 1.74
CKS1B-203ENST00000368439 TXNRD1Q16881 649 aa25.88■■□□□ 1.73
CKS1B-203ENST00000368439 NBPF14Q5TI25 921 aa25.87■■□□□ 1.73
CKS1B-203ENST00000368439 NPC1L1Q9UHC9 1359 aa25.86■■□□□ 1.73
CKS1B-203ENST00000368439 CYP27B1O15528 508 aa25.86■■□□□ 1.73
CKS1B-203ENST00000368439 IGSF1Q8N6C5 1336 aa25.86■■□□□ 1.73
CKS1B-203ENST00000368439 PCDH11XQ9BZA7 1347 aa25.86■■□□□ 1.73
CKS1B-203ENST00000368439 PCDH11YQ9BZA8 1340 aa25.86■■□□□ 1.73
CKS1B-203ENST00000368439 PRIM1P49642 420 aaKnown RBP25.85■■□□□ 1.73
CKS1B-203ENST00000368439 ANO8Q9HCE9 1232 aaPredicted RBP25.85■■□□□ 1.73
CKS1B-203ENST00000368439 TOGARAM1Q9Y4F4 1720 aa25.85■■□□□ 1.73
CKS1B-203ENST00000368439 PAPPAQ13219 1627 aa25.84■■□□□ 1.73
CKS1B-203ENST00000368439 CC2D1BQ5T0F9 858 aaKnown RBP25.83■■□□□ 1.73
CKS1B-203ENST00000368439 LY75O60449 1722 aa25.83■■□□□ 1.72
CKS1B-203ENST00000368439 ITGB4P16144 1822 aa25.81■■□□□ 1.72
CKS1B-203ENST00000368439 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.81■■□□□ 1.72
CKS1B-203ENST00000368439 PLEKHG2Q9H7P9 1386 aa25.81■■□□□ 1.72
CKS1B-203ENST00000368439 CASZ1Q86V15 1759 aa25.79■■□□□ 1.72
CKS1B-203ENST00000368439 IL13P35225 146 aa25.79■■□□□ 1.72
CKS1B-203ENST00000368439 NKX1-1Q15270 411 aaPredicted RBP25.79■■□□□ 1.72
CKS1B-203ENST00000368439 SYTL4Q96C24 671 aaPredicted RBP25.79■■□□□ 1.72
CKS1B-203ENST00000368439 MTHFSP49914 203 aa25.78■■□□□ 1.72
CKS1B-203ENST00000368439 SPG7Q9UQ90 795 aa25.78■■□□□ 1.72
CKS1B-203ENST00000368439 LRRC4BQ9NT99 713 aa25.77■■□□□ 1.72
CKS1B-203ENST00000368439 AEBP1Q8IUX7 1158 aa25.75■■□□□ 1.71
CKS1B-203ENST00000368439 KDRP35968 1356 aa25.74■■□□□ 1.71
CKS1B-203ENST00000368439 SLC15A2Q16348 729 aa25.74■■□□□ 1.71
CKS1B-203ENST00000368439 PHKG2P15735 406 aa25.73■■□□□ 1.71
CKS1B-203ENST00000368439 SLC27A3Q5K4L6 730 aa25.72■■□□□ 1.71
CKS1B-203ENST00000368439 PDGFDQ9GZP0 370 aaPredicted RBP25.72■■□□□ 1.71
CKS1B-203ENST00000368439 STK32BQ9NY57 414 aa25.72■■□□□ 1.71
CKS1B-203ENST00000368439 COL3A1P02461 1466 aaPredicted RBP25.72■■□□□ 1.71
CKS1B-203ENST00000368439 IFNL2Q8IZJ0 200 aa25.71■■□□□ 1.71
CKS1B-203ENST00000368439 CNGB1Q14028 1251 aaPredicted RBP25.7■■□□□ 1.7
CKS1B-203ENST00000368439 SULT6B1Q6IMI4 303 aa25.7■■□□□ 1.7
CKS1B-203ENST00000368439 QSER1Q2KHR3 1735 aa25.68■■□□□ 1.7
CKS1B-203ENST00000368439 KCNQ4P56696 695 aa25.68■■□□□ 1.7
CKS1B-203ENST00000368439 ZNF827Q17R98 1081 aa25.68■■□□□ 1.7
CKS1B-203ENST00000368439 MPRIPQ6WCQ1 1025 aa25.68■■□□□ 1.7
CKS1B-203ENST00000368439 TUBGCP6Q96RT7 1819 aa25.67■■□□□ 1.7
CKS1B-203ENST00000368439 PLEKHO1Q53GL0 409 aaPredicted RBP25.67■■□□□ 1.7
CKS1B-203ENST00000368439 PIGBQ92521 554 aa25.67■■□□□ 1.7
CKS1B-203ENST00000368439 AKT1S1Q96B36 256 aa25.67■■□□□ 1.7
CKS1B-203ENST00000368439 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
CKS1B-203ENST00000368439 DIAPH1O60610 1272 aaKnown RBP25.65■■□□□ 1.7
CKS1B-203ENST00000368439 AMOTQ4VCS5 1084 aa25.65■■□□□ 1.7
CKS1B-203ENST00000368439 PALLDQ8WX93 1383 aa25.64■■□□□ 1.69
CKS1B-203ENST00000368439 CCNL1Q9UK58 526 aaPredicted RBP25.63■■□□□ 1.69
CKS1B-203ENST00000368439 C5P01031 1676 aa25.63■■□□□ 1.69
CKS1B-203ENST00000368439 KDM6AO15550 1401 aaPredicted RBP25.63■■□□□ 1.69
CKS1B-203ENST00000368439 ZNF530Q6P9A1 599 aaPredicted RBP25.62■■□□□ 1.69
CKS1B-203ENST00000368439 SPON1Q9HCB6 807 aa25.62■■□□□ 1.69
CKS1B-203ENST00000368439 HMOX1P09601 288 aa25.6■■□□□ 1.69
CKS1B-203ENST00000368439 DCAF5Q96JK2 942 aa25.6■■□□□ 1.69
CKS1B-203ENST00000368439 SMARCC1Q92922 1105 aaPredicted RBP25.59■■□□□ 1.69
CKS1B-203ENST00000368439 TMOD3Q9NYL9 352 aa25.59■■□□□ 1.69
CKS1B-203ENST00000368439 SCN11AQ9UI33 1791 aa25.59■■□□□ 1.69
CKS1B-203ENST00000368439 ERVV-2B6SEH9 535 aa25.58■■□□□ 1.69
CKS1B-203ENST00000368439 ZBTB7AO95365 584 aa25.58■■□□□ 1.69
CKS1B-203ENST00000368439 HSP90AB1P08238 724 aaKnown RBP25.58■■□□□ 1.69
CKS1B-203ENST00000368439 PPP2R1AP30153 589 aa25.58■■□□□ 1.69
CKS1B-203ENST00000368439 VIRMAQ69YN4 1812 aaKnown RBP25.58■■□□□ 1.68
CKS1B-203ENST00000368439 PNPLA7Q6ZV29 1317 aa25.57■■□□□ 1.68
CKS1B-203ENST00000368439 ASAP1Q9ULH1 1129 aa25.56■■□□□ 1.68
CKS1B-203ENST00000368439 COL24A1Q17RW2 1714 aa25.56■■□□□ 1.68
CKS1B-203ENST00000368439 PTGER2P43116 358 aa25.55■■□□□ 1.68
CKS1B-203ENST00000368439 ATG3Q9NT62 314 aa25.55■■□□□ 1.68
CKS1B-203ENST00000368439 C1orf141Q5JVX7 400 aa25.54■■□□□ 1.68
CKS1B-203ENST00000368439 C4BP0C0L5 1744 aa25.54■■□□□ 1.68
CKS1B-203ENST00000368439 ADAMTS7Q9UKP4 1686 aa25.53■■□□□ 1.68
CKS1B-203ENST00000368439 SGIP1Q9BQI5 828 aa25.53■■□□□ 1.68
CKS1B-203ENST00000368439 MTFR1LQ9H019 292 aa25.53■■□□□ 1.68
CKS1B-203ENST00000368439 ATF5Q9Y2D1 282 aaPredicted RBP25.53■■□□□ 1.68
CKS1B-203ENST00000368439 ZNF831Q5JPB2 1677 aa25.52■■□□□ 1.68
CKS1B-203ENST00000368439 AKAP4Q5JQC9 854 aa25.52■■□□□ 1.68
CKS1B-203ENST00000368439 TFCP2L1Q9NZI6 479 aa25.52■■□□□ 1.68
CKS1B-203ENST00000368439 LOC102724428A0A0B4J2F2 783 aa25.51■■□□□ 1.67
CKS1B-203ENST00000368439 U2SURPO15042 1029 aaKnown RBP25.51■■□□□ 1.67
CKS1B-203ENST00000368439 SIK1P57059 783 aa25.51■■□□□ 1.67
CKS1B-203ENST00000368439 MTHFSDQ2M296 383 aaKnown RBP25.51■■□□□ 1.67
CKS1B-203ENST00000368439 UBR3Q6ZT12 1888 aa25.5■■□□□ 1.67
CKS1B-203ENST00000368439 CFAP53Q96M91 514 aa25.5■■□□□ 1.67
CKS1B-203ENST00000368439 CABP4P57796 275 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms