RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 FAM208AQ9UK61 1670 aaKnown RBP21.33■■□□□ 1
VAMP4-202ENST00000367740 WDR90Q96KV7 1748 aa21.32■■□□□ 1
VAMP4-202ENST00000367740 CD2APQ9Y5K6 639 aa21.32■■□□□ 1
VAMP4-202ENST00000367740 ANKRD36BQ8N2N9 1353 aa21.32■■□□□ 1
VAMP4-202ENST00000367740 ZNF692Q9BU19 519 aaPredicted RBP21.31■■□□□ 1
VAMP4-202ENST00000367740 PCNTO95613 3336 aa21.31■■□□□ 1
VAMP4-202ENST00000367740 CICQ96RK0 1608 aaPredicted RBP21.3■■□□□ 1
VAMP4-202ENST00000367740 ANKRD24Q8TF21 1146 aa21.29■■□□□ 1
VAMP4-202ENST00000367740 SYTL4Q96C24 671 aaPredicted RBP21.29■■□□□ 1
VAMP4-202ENST00000367740 TAF1LQ8IZX4 1826 aa21.29■■□□□ 1
VAMP4-202ENST00000367740 DDX54Q8TDD1 881 aaKnown RBP21.28■■□□□ 1
VAMP4-202ENST00000367740 CCNL1Q9UK58 526 aaPredicted RBP21.28■■□□□ 1
VAMP4-202ENST00000367740 EVC2Q86UK5 1308 aa21.28■■□□□ 1
VAMP4-202ENST00000367740 USP31Q70CQ4 1352 aa21.27■■□□□ 1
VAMP4-202ENST00000367740 KTN1Q86UP2 1357 aaKnown RBP21.27■■□□□ 1
VAMP4-202ENST00000367740 PRIM1P49642 420 aaKnown RBP21.27■■□□□ 1
VAMP4-202ENST00000367740 COL13A1Q5TAT6 717 aaPredicted RBP21.26■□□□□ 0.99
VAMP4-202ENST00000367740 TOGARAM1Q9Y4F4 1720 aa21.26■□□□□ 0.99
VAMP4-202ENST00000367740 IGSF1Q8N6C5 1336 aa21.25■□□□□ 0.99
VAMP4-202ENST00000367740 CAPN15O75808 1086 aa21.24■□□□□ 0.99
VAMP4-202ENST00000367740 WWC3Q9ULE0 1092 aa21.23■□□□□ 0.99
VAMP4-202ENST00000367740 RGPD2P0DJD1 1756 aa21.23■□□□□ 0.99
VAMP4-202ENST00000367740 UBR3Q6ZT12 1888 aa21.2■□□□□ 0.98
VAMP4-202ENST00000367740 TOMM70O94826 608 aa21.2■□□□□ 0.98
VAMP4-202ENST00000367740 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.2■□□□□ 0.98
VAMP4-202ENST00000367740 USP47Q96K76 1375 aa21.2■□□□□ 0.98
VAMP4-202ENST00000367740 C4BP0C0L5 1744 aa21.19■□□□□ 0.98
VAMP4-202ENST00000367740 NME9Q86XW9 330 aa21.19■□□□□ 0.98
VAMP4-202ENST00000367740 KIAA1551Q9HCM1 1747 aa21.18■□□□□ 0.98
VAMP4-202ENST00000367740 SBNO2Q9Y2G9 1366 aa21.18■□□□□ 0.98
VAMP4-202ENST00000367740 CD163L1Q9NR16 1453 aa21.18■□□□□ 0.98
VAMP4-202ENST00000367740 MEGF6O75095 1541 aa21.18■□□□□ 0.98
VAMP4-202ENST00000367740 PRELPP51888 382 aa21.15■□□□□ 0.98
VAMP4-202ENST00000367740 JMYQ8N9B5 988 aa21.15■□□□□ 0.98
VAMP4-202ENST00000367740 FLAD1Q8NFF5 587 aa21.15■□□□□ 0.98
VAMP4-202ENST00000367740 KLRG1Q96E93 195 aa21.15■□□□□ 0.98
VAMP4-202ENST00000367740 KIF13BQ9NQT8 1826 aa21.15■□□□□ 0.98
VAMP4-202ENST00000367740 TNS4Q8IZW8 715 aa21.14■□□□□ 0.97
VAMP4-202ENST00000367740 HTRA3P83110 453 aa21.13■□□□□ 0.97
VAMP4-202ENST00000367740 AMIGO3Q86WK7 504 aa21.13■□□□□ 0.97
VAMP4-202ENST00000367740 N4BP2Q86UW6 1770 aaPredicted RBP21.13■□□□□ 0.97
VAMP4-202ENST00000367740 ZCRB1Q8TBF4 217 aaKnown RBP21.12■□□□□ 0.97
VAMP4-202ENST00000367740 IP6K1Q92551 441 aa21.12■□□□□ 0.97
VAMP4-202ENST00000367740 LTV1Q96GA3 475 aaPredicted RBP21.12■□□□□ 0.97
VAMP4-202ENST00000367740 NMRK2Q9NPI5 230 aa21.12■□□□□ 0.97
VAMP4-202ENST00000367740 PALLDQ8WX93 1383 aa21.1■□□□□ 0.97
VAMP4-202ENST00000367740 ITGB4P16144 1822 aa21.09■□□□□ 0.97
VAMP4-202ENST00000367740 PXDNLA1KZ92 1463 aa21.09■□□□□ 0.97
VAMP4-202ENST00000367740 EDC4Q6P2E9 1401 aaKnown RBP21.09■□□□□ 0.97
VAMP4-202ENST00000367740 PKD1L3Q7Z443 1732 aa21.09■□□□□ 0.97
VAMP4-202ENST00000367740 BRCA1P38398 1863 aaKnown RBP21.08■□□□□ 0.97
VAMP4-202ENST00000367740 RBM46Q8TBY0 533 aaKnown RBP21.08■□□□□ 0.97
VAMP4-202ENST00000367740 SMIM5Q71RC9 77 aa21.06■□□□□ 0.96
VAMP4-202ENST00000367740 MAP2P11137 1827 aaKnown RBP21.06■□□□□ 0.96
VAMP4-202ENST00000367740 NSD3Q9BZ95 1437 aa21.05■□□□□ 0.96
VAMP4-202ENST00000367740 PHF14O94880 888 aa21.05■□□□□ 0.96
VAMP4-202ENST00000367740 AK7Q96M32 723 aa21.05■□□□□ 0.96
VAMP4-202ENST00000367740 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.04■□□□□ 0.96
VAMP4-202ENST00000367740 HMGB2P26583 209 aaKnown RBP21.03■□□□□ 0.96
VAMP4-202ENST00000367740 HOXC9P31274 260 aa21.02■□□□□ 0.96
VAMP4-202ENST00000367740 TNRC6CQ9HCJ0 1690 aaKnown RBP21.02■□□□□ 0.95
VAMP4-202ENST00000367740 MAP3K19Q56UN5 1328 aa21.02■□□□□ 0.95
VAMP4-202ENST00000367740 ARFGEF1Q9Y6D6 1849 aa21.01■□□□□ 0.95
VAMP4-202ENST00000367740 A0A1W2PP64 1363 aa21.01■□□□□ 0.95
VAMP4-202ENST00000367740 FSTL1Q12841 308 aa21.01■□□□□ 0.95
VAMP4-202ENST00000367740 ROCK2O75116 1388 aaKnown RBP21■□□□□ 0.95
VAMP4-202ENST00000367740 BCS1LQ9Y276 419 aa21■□□□□ 0.95
VAMP4-202ENST00000367740 KCPQ6ZWJ8 1503 aa20.99■□□□□ 0.95
VAMP4-202ENST00000367740 SSFA2P28290 1259 aa20.99■□□□□ 0.95
VAMP4-202ENST00000367740 HDGFL2Q7Z4V5 671 aaPredicted RBP20.99■□□□□ 0.95
VAMP4-202ENST00000367740 C16orf71Q8IYS4 520 aaPredicted RBP20.99■□□□□ 0.95
VAMP4-202ENST00000367740 CGNL1Q0VF96 1302 aa20.99■□□□□ 0.95
VAMP4-202ENST00000367740 PLEKHG2Q9H7P9 1386 aa20.98■□□□□ 0.95
VAMP4-202ENST00000367740 C10orf71Q711Q0 1435 aa20.98■□□□□ 0.95
VAMP4-202ENST00000367740 MPRIPQ6WCQ1 1025 aa20.98■□□□□ 0.95
VAMP4-202ENST00000367740 ARHGAP27Q6ZUM4 889 aa20.97■□□□□ 0.95
VAMP4-202ENST00000367740 USHBP1Q8N6Y0 703 aa20.97■□□□□ 0.95
VAMP4-202ENST00000367740 TMC1Q8TDI8 760 aa20.97■□□□□ 0.95
VAMP4-202ENST00000367740 SLC12A5Q9H2X9 1139 aa20.97■□□□□ 0.95
VAMP4-202ENST00000367740 NBPF6Q5VWK0 638 aa20.96■□□□□ 0.95
VAMP4-202ENST00000367740 NBPF4Q96M43 638 aa20.96■□□□□ 0.95
VAMP4-202ENST00000367740 PCDH11XQ9BZA7 1347 aa20.96■□□□□ 0.95
VAMP4-202ENST00000367740 PCDH11YQ9BZA8 1340 aa20.96■□□□□ 0.95
VAMP4-202ENST00000367740 MMP10P09238 476 aa20.95■□□□□ 0.94
VAMP4-202ENST00000367740 FBLN1P23142 703 aa20.95■□□□□ 0.94
VAMP4-202ENST00000367740 LINC00116Q8NCU8 138 aa20.95■□□□□ 0.94
VAMP4-202ENST00000367740 L3MBTL2Q969R5 705 aa20.95■□□□□ 0.94
VAMP4-202ENST00000367740 RTL1A6NKG5 1358 aa20.95■□□□□ 0.94
VAMP4-202ENST00000367740 A0A0G2JLW4 131 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 SLC34A2O95436 690 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 AMPHP49418 695 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 TGFB2P61812 414 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 C9orf131Q5VYM1 1079 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 SMARCC1Q92922 1105 aaPredicted RBP20.94■□□□□ 0.94
VAMP4-202ENST00000367740 C4AP0C0L4 1744 aa20.94■□□□□ 0.94
VAMP4-202ENST00000367740 HSPA1AP0DMV8 641 aaKnown RBP20.93■□□□□ 0.94
VAMP4-202ENST00000367740 HSPA1BP0DMV9 641 aaKnown RBP20.93■□□□□ 0.94
VAMP4-202ENST00000367740 RAPGEF4Q8WZA2 1011 aa20.93■□□□□ 0.94
VAMP4-202ENST00000367740 SBF1O95248 1867 aa20.92■□□□□ 0.94
VAMP4-202ENST00000367740 TERF2IPQ9NYB0 399 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms