RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 TRIM5Q9C035 493 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 PARD3Q8TEW0 1356 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 PTPRCP08575 1304 aa10.7□□□□□ -0.7
SYNE1-205ENST00000367251 NUDT16Q96DE0 195 aaKnown RBP10.7□□□□□ -0.7
SYNE1-205ENST00000367251 DISP3Q9P2K9 1392 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 GNAT3A8MTJ3 354 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 PRAG1Q86YV5 1406 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-205ENST00000367251 DACH1Q9UI36 760 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 KCNH5Q8NCM2 988 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 ERCC4Q92889 916 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-205ENST00000367251 BRPF3Q9ULD4 1205 aa10.69□□□□□ -0.7
SYNE1-205ENST00000367251 MYCNP04198 464 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-205ENST00000367251 ESCO1Q5FWF5 840 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 SSH1Q8WYL5 1049 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 CFAP45Q9UL16 551 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 WDR62O43379 1518 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 SLC3A2P08195 630 aaKnown RBP10.68□□□□□ -0.7
SYNE1-205ENST00000367251 ZNF530Q6P9A1 599 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-205ENST00000367251 PDRG1Q9NUG6 133 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 CTNNA3Q9UI47 895 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 ARHGAP45Q92619 1136 aa10.68□□□□□ -0.7
SYNE1-205ENST00000367251 NUP153P49790 1475 aaKnown RBP10.67□□□□□ -0.7
SYNE1-205ENST00000367251 INSRP06213 1382 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 FANCAO15360 1455 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 RNF214Q8ND24 703 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 KIF1BPQ96EK5 621 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 DNAJC2Q99543 621 aaKnown RBP10.67□□□□□ -0.7
SYNE1-205ENST00000367251 TTC21BQ7Z4L5 1316 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 PLCH2O75038 1416 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 TTC39AQ5SRH9 613 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 AK7Q96M32 723 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 KIAA0556O60303 1618 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 OFD1O75665 1012 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 FILIP1LQ4L180 1135 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 SMARCE1Q969G3 411 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 STK38Q15208 465 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 BLOC1S2Q6QNY1 142 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 NOS1P29475 1434 aa10.67□□□□□ -0.7
SYNE1-205ENST00000367251 CDKL5O76039 1030 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 RDXP35241 583 aaKnown RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 CDR1P51861 262 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 TNMDQ9H2S6 317 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 ADAMTS12P58397 1594 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 NAP1L1P55209 391 aaKnown RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 BMP2KLQ5H9B9 411 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 NUTM2GQ5VZR2 741 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 ADGRF5Q8IZF2 1346 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 KDM5BQ9UGL1 1544 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 FIBPO43427 364 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 EPS15P42566 896 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 HDAC1Q13547 482 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 CBFA2T2O43439 604 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 MX1P20591 662 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 LARP1BQ659C4 914 aaKnown RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 PIK3C2GO75747 1445 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 SRGAP3O43295 1099 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 GLRX3O76003 335 aaKnown RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 ATP2B2Q01814 1243 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 HSP90AB2PQ58FF8 381 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 C20orf194Q5TEA3 1177 aa10.66□□□□□ -0.7
SYNE1-205ENST00000367251 SH2B1Q9NRF2 756 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-205ENST00000367251 POLR3AO14802 1390 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-205ENST00000367251 RBM5P52756 815 aaKnown RBP eCLIP10.65□□□□□ -0.7
SYNE1-205ENST00000367251 GNL3LQ9NVN8 582 aaKnown RBP10.65□□□□□ -0.7
SYNE1-205ENST00000367251 DNMT1P26358 1616 aaKnown RBP10.65□□□□□ -0.7
SYNE1-205ENST00000367251 MPHOSPH10O00566 681 aaKnown RBP10.65□□□□□ -0.7
SYNE1-205ENST00000367251 DENND4BO75064 1496 aaPredicted RBP10.65□□□□□ -0.71
SYNE1-205ENST00000367251 BTBD11A6QL63 1104 aa10.65□□□□□ -0.71
SYNE1-205ENST00000367251 TXLNAP40222 546 aa10.65□□□□□ -0.71
SYNE1-205ENST00000367251 NACAP1Q9BZK3 213 aa10.65□□□□□ -0.71
SYNE1-205ENST00000367251 UHRF1BP1Q6BDS2 1440 aa10.65□□□□□ -0.71
SYNE1-205ENST00000367251 ESPNB1AK53 854 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 AMOTQ4VCS5 1084 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 HSP90B2PQ58FF3 399 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 AACSQ86V21 672 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 ATP10BO94823 1461 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 RAPGEF3O95398 923 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 CABP4P57796 275 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 NOM1Q5C9Z4 860 aaKnown RBP10.64□□□□□ -0.71
SYNE1-205ENST00000367251 STRN4Q9NRL3 753 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 CHMP4BP1P59074 171 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 RRS1Q15050 365 aaKnown RBP10.64□□□□□ -0.71
SYNE1-205ENST00000367251 ANKLE2Q86XL3 938 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 ZSCAN30Q86W11 494 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 TRIM22Q8IYM9 498 aa10.64□□□□□ -0.71
SYNE1-205ENST00000367251 WASLO00401 505 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-205ENST00000367251 PROSER2Q86WR7 435 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-205ENST00000367251 RBM42Q9BTD8 480 aaKnown RBP10.63□□□□□ -0.71
SYNE1-205ENST00000367251 SMC2O95347 1197 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 TAF7Q15545 349 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-205ENST00000367251 SPATA32Q96LK8 384 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 NUP62CLQ9H1M0 184 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 ZNF608Q9ULD9 1512 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-205ENST00000367251 TRIM27P14373 513 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 WASF1Q92558 559 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 RUFY1Q96T51 708 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 TXLNBQ8N3L3 684 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 TBC1D32Q96NH3 1257 aa10.63□□□□□ -0.71
SYNE1-205ENST00000367251 JAKMIP1Q96N16 626 aaKnown RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms