RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 ABCC4O15439 1325 aa28.58■■■□□ 2.17
LDB1-201ENST00000361198 NFKBIBQ15653 356 aa28.57■■■□□ 2.16
LDB1-201ENST00000361198 SMC5Q8IY18 1101 aa28.57■■■□□ 2.16
LDB1-201ENST00000361198 ESCO1Q5FWF5 840 aa28.55■■■□□ 2.16
LDB1-201ENST00000361198 SEC24BO95487 1268 aa28.55■■■□□ 2.16
LDB1-201ENST00000361198 RTF1Q92541 710 aaKnown RBP28.54■■■□□ 2.16
LDB1-201ENST00000361198 KIAA0232Q92628 1395 aa28.54■■■□□ 2.16
LDB1-201ENST00000361198 API5Q9BZZ5 524 aaKnown RBP28.53■■■□□ 2.16
LDB1-201ENST00000361198 GAS2L2Q8NHY3 880 aa28.52■■■□□ 2.16
LDB1-201ENST00000361198 MIS18AQ9NYP9 233 aa28.52■■■□□ 2.16
LDB1-201ENST00000361198 NWD1Q149M9 1564 aa28.51■■■□□ 2.16
LDB1-201ENST00000361198 PSME1Q06323 249 aa28.51■■■□□ 2.15
LDB1-201ENST00000361198 LTV1Q96GA3 475 aaPredicted RBP28.51■■■□□ 2.15
LDB1-201ENST00000361198 CHMP4BQ9H444 224 aaKnown RBP28.51■■■□□ 2.15
LDB1-201ENST00000361198 HAP1P54257 671 aaPredicted RBP28.5■■■□□ 2.15
LDB1-201ENST00000361198 C1orf115Q9H7X2 142 aa28.5■■■□□ 2.15
LDB1-201ENST00000361198 LTN1O94822 1766 aa28.48■■■□□ 2.15
LDB1-201ENST00000361198 TSPYL4Q9UJ04 414 aa28.46■■■□□ 2.15
LDB1-201ENST00000361198 RTL1A6NKG5 1358 aa28.46■■■□□ 2.15
LDB1-201ENST00000361198 ORAI2Q96SN7 254 aa28.45■■■□□ 2.15
LDB1-201ENST00000361198 NUCB1Q02818 461 aa28.44■■■□□ 2.14
LDB1-201ENST00000361198 NFAT5O94916 1531 aa28.44■■■□□ 2.14
LDB1-201ENST00000361198 RGS12O14924 1447 aa28.43■■■□□ 2.14
LDB1-201ENST00000361198 HTATSF1O43719 755 aaKnown RBP28.43■■■□□ 2.14
LDB1-201ENST00000361198 IP6K1Q92551 441 aa28.43■■■□□ 2.14
LDB1-201ENST00000361198 GNAT3A8MTJ3 354 aa28.43■■■□□ 2.14
LDB1-201ENST00000361198 USHBP1Q8N6Y0 703 aa28.43■■■□□ 2.14
LDB1-201ENST00000361198 SIRT2Q8IXJ6 389 aa28.42■■■□□ 2.14
LDB1-201ENST00000361198 GSE1Q14687 1217 aa28.41■■■□□ 2.14
LDB1-201ENST00000361198 INTS3Q68E01 1043 aaKnown RBP28.41■■■□□ 2.14
LDB1-201ENST00000361198 LNPKQ9C0E8 428 aa28.4■■■□□ 2.14
LDB1-201ENST00000361198 XPCQ01831 940 aaPredicted RBP28.4■■■□□ 2.14
LDB1-201ENST00000361198 SLC4A2P04920 1241 aa28.39■■■□□ 2.14
LDB1-201ENST00000361198 CHD1LQ86WJ1 897 aa28.39■■■□□ 2.14
LDB1-201ENST00000361198 KCNH5Q8NCM2 988 aa28.39■■■□□ 2.14
LDB1-201ENST00000361198 LRRC37A3O60309 1634 aa28.39■■■□□ 2.14
LDB1-201ENST00000361198 PTPRCP08575 1304 aa28.38■■■□□ 2.13
LDB1-201ENST00000361198 GCC1Q96CN9 775 aa28.38■■■□□ 2.13
LDB1-201ENST00000361198 PROSER2Q86WR7 435 aaPredicted RBP28.38■■■□□ 2.13
LDB1-201ENST00000361198 IL17REQ8NFR9 667 aa28.38■■■□□ 2.13
LDB1-201ENST00000361198 MSH6P52701 1360 aa28.37■■■□□ 2.13
LDB1-201ENST00000361198 MAP3K5Q99683 1374 aa28.37■■■□□ 2.13
LDB1-201ENST00000361198 ZBTB7CA1YPR0 619 aa28.36■■■□□ 2.13
LDB1-201ENST00000361198 BECN1Q14457 450 aa28.36■■■□□ 2.13
LDB1-201ENST00000361198 NBPF6Q5VWK0 638 aa28.36■■■□□ 2.13
LDB1-201ENST00000361198 NBPF4Q96M43 638 aa28.36■■■□□ 2.13
LDB1-201ENST00000361198 TBC1D32Q96NH3 1257 aa28.35■■■□□ 2.13
LDB1-201ENST00000361198 ANKRD45Q5TZF3 282 aa28.35■■■□□ 2.13
LDB1-201ENST00000361198 UPF2Q9HAU5 1272 aaKnown RBP28.34■■■□□ 2.13
LDB1-201ENST00000361198 FRAT2O75474 233 aaPredicted RBP28.32■■■□□ 2.12
LDB1-201ENST00000361198 G2E3Q7L622 706 aa28.32■■■□□ 2.12
LDB1-201ENST00000361198 DNAJC5Q9H3Z4 198 aa28.32■■■□□ 2.12
LDB1-201ENST00000361198 GCP02774 474 aa28.32■■■□□ 2.12
LDB1-201ENST00000361198 PLEKHG5O94827 1062 aa28.31■■■□□ 2.12
LDB1-201ENST00000361198 PHRF1Q9P1Y6 1649 aaKnown RBP28.31■■■□□ 2.12
LDB1-201ENST00000361198 LMOD2Q6P5Q4 547 aa28.3■■■□□ 2.12
LDB1-201ENST00000361198 RGPD2P0DJD1 1756 aa28.29■■■□□ 2.12
LDB1-201ENST00000361198 TAF7Q15545 349 aaPredicted RBP28.29■■■□□ 2.12
LDB1-201ENST00000361198 C19orf44Q9H6X5 657 aa28.29■■■□□ 2.12
LDB1-201ENST00000361198 ARHGEF25Q86VW2 580 aa28.29■■■□□ 2.12
LDB1-201ENST00000361198 LRRC59Q96AG4 307 aaKnown RBP28.29■■■□□ 2.12
LDB1-201ENST00000361198 C1orf167Q5SNV9 1468 aa28.28■■■□□ 2.12
LDB1-201ENST00000361198 SLIT3O75094 1523 aa28.27■■■□□ 2.12
LDB1-201ENST00000361198 KRT28Q7Z3Y7 464 aa28.27■■■□□ 2.12
LDB1-201ENST00000361198 ATP10DQ9P241 1426 aa28.27■■■□□ 2.12
LDB1-201ENST00000361198 TRPM3Q9HCF6 1732 aaPredicted RBP28.26■■■□□ 2.11
LDB1-201ENST00000361198 F6X3S4 739 aa28.26■■■□□ 2.11
LDB1-201ENST00000361198 MEIS3Q99687 375 aa28.26■■■□□ 2.11
LDB1-201ENST00000361198 STK31Q9BXU1 1019 aa28.26■■■□□ 2.11
LDB1-201ENST00000361198 BABAM1Q9NWV8 329 aa28.26■■■□□ 2.11
LDB1-201ENST00000361198 ANKRD44Q8N8A2 993 aa28.25■■■□□ 2.11
LDB1-201ENST00000361198 DCTPP1Q9H773 170 aa28.24■■■□□ 2.11
LDB1-201ENST00000361198 CCDC30Q5VVM6 783 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 SLC4A10Q6U841 1118 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 CEMIPQ8WUJ3 1361 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 MFAP1P55081 439 aaKnown RBP28.23■■■□□ 2.11
LDB1-201ENST00000361198 CEP85Q6P2H3 762 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 NECTIN2Q92692 538 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 ANTXR1Q9H6X2 564 aa28.23■■■□□ 2.11
LDB1-201ENST00000361198 RPAP2Q8IXW5 612 aaPredicted RBP28.22■■■□□ 2.11
LDB1-201ENST00000361198 BMP2KLQ5H9B9 411 aa28.22■■■□□ 2.11
LDB1-201ENST00000361198 LGR6Q9HBX8 967 aa28.22■■■□□ 2.11
LDB1-201ENST00000361198 KIF1AQ12756 1690 aa28.21■■■□□ 2.11
LDB1-201ENST00000361198 FAM208AQ9UK61 1670 aaKnown RBP28.21■■■□□ 2.11
LDB1-201ENST00000361198 FLIIQ13045 1269 aa28.2■■■□□ 2.11
LDB1-201ENST00000361198 IL27Q8NEV9 243 aa28.2■■■□□ 2.1
LDB1-201ENST00000361198 TBC1D2Q9BYX2 928 aa28.2■■■□□ 2.1
LDB1-201ENST00000361198 SOS1Q07889 1333 aaPredicted RBP28.19■■■□□ 2.1
LDB1-201ENST00000361198 CCT4P50991 539 aaKnown RBP28.19■■■□□ 2.1
LDB1-201ENST00000361198 AXIN2Q9Y2T1 843 aa28.19■■■□□ 2.1
LDB1-201ENST00000361198 ANKRD24Q8TF21 1146 aa28.18■■■□□ 2.1
LDB1-201ENST00000361198 C22orf23Q9BZE7 217 aa28.18■■■□□ 2.1
LDB1-201ENST00000361198 TMEM94Q12767 1356 aa28.18■■■□□ 2.1
LDB1-201ENST00000361198 CACNA1FO60840 1977 aa28.18■■■□□ 2.1
LDB1-201ENST00000361198 FKBP5Q13451 457 aaPredicted RBP28.17■■■□□ 2.1
LDB1-201ENST00000361198 STRCP1A6NGW2 1772 aa28.16■■■□□ 2.1
LDB1-201ENST00000361198 ATF3P18847 181 aa28.16■■■□□ 2.1
LDB1-201ENST00000361198 ZNF530Q6P9A1 599 aaPredicted RBP28.16■■■□□ 2.1
LDB1-201ENST00000361198 MED1Q15648 1581 aaPredicted RBP28.16■■■□□ 2.1
LDB1-201ENST00000361198 PLEKHO1Q53GL0 409 aaPredicted RBP28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms