RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 C6orf229H3BNL8 230 aa18.41■□□□□ 0.54
PTPRF-201ENST00000359947 NEFHP12036 1026 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 WDHD1O75717 1129 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-201ENST00000359947 STIM1Q13586 685 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 EXOC6BQ9Y2D4 811 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 PPM1FP49593 454 aaPredicted RBP18.4■□□□□ 0.54
PTPRF-201ENST00000359947 NBPF8Q3BBV2 869 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 ATF7IPQ6VMQ6 1270 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 NOL7Q9UMY1 257 aaKnown RBP18.4■□□□□ 0.54
PTPRF-201ENST00000359947 JMYQ8N9B5 988 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 DUSP27Q5VZP5 1158 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 SPDYE4A6NLX3 237 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 TEX35Q5T0J7 233 aa18.4■□□□□ 0.54
PTPRF-201ENST00000359947 HFM1A2PYH4 1435 aa18.39■□□□□ 0.54
PTPRF-201ENST00000359947 LARP1BQ659C4 914 aaKnown RBP18.39■□□□□ 0.53
PTPRF-201ENST00000359947 BLOC1S2Q6QNY1 142 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 NME9Q86XW9 330 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 MPNDQ8N594 471 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 NSD3Q9BZ95 1437 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 AAMPQ13685 434 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 DDX11Q96FC9 970 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 ANKRD1Q15327 319 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 KIAA1107Q9UPP5 1409 aa18.39■□□□□ 0.53
PTPRF-201ENST00000359947 NASPP49321 788 aaPredicted RBP18.39■□□□□ 0.53
PTPRF-201ENST00000359947 ZNHIT6Q9NWK9 470 aaKnown RBP18.39■□□□□ 0.53
PTPRF-201ENST00000359947 ANKRD62A6NC57 917 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 DHX8Q14562 1220 aaKnown RBP18.38■□□□□ 0.53
PTPRF-201ENST00000359947 CCDC82Q8N4S0 544 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 NEBLO76041 1014 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 CD109Q6YHK3 1445 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 PDRG1Q9NUG6 133 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 CCDC96Q2M329 555 aa18.38■□□□□ 0.53
PTPRF-201ENST00000359947 NOM1Q5C9Z4 860 aaKnown RBP18.38■□□□□ 0.53
PTPRF-201ENST00000359947 SEC63Q9UGP8 760 aaKnown RBP18.38■□□□□ 0.53
PTPRF-201ENST00000359947 BMP2KQ9NSY1 1161 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-201ENST00000359947 SSR1P43307 286 aaKnown RBP18.37■□□□□ 0.53
PTPRF-201ENST00000359947 HSP90B2PQ58FF3 399 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 BOLA2Q9H3K6 86 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 ATAD2Q6PL18 1390 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 CHRNA2Q15822 529 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 PHF8Q9UPP1 1060 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 IFIT1P09914 478 aaKnown RBP18.37■□□□□ 0.53
PTPRF-201ENST00000359947 RABEP1Q15276 862 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 IMMTQ16891 758 aaKnown RBP18.37■□□□□ 0.53
PTPRF-201ENST00000359947 FAM177A1Q8N128 213 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-201ENST00000359947 CTNNA3Q9UI47 895 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 MYO6Q9UM54 1294 aa18.37■□□□□ 0.53
PTPRF-201ENST00000359947 NFE2L2Q16236 605 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 ZBTB3Q9H5J0 574 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 ARGLU1Q9NWB6 273 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-201ENST00000359947 ECM2O94769 699 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-201ENST00000359947 IFIT5Q13325 482 aaKnown RBP18.36■□□□□ 0.53
PTPRF-201ENST00000359947 KRT28Q7Z3Y7 464 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 ERICH3Q5RHP9 1530 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 SMARCA5O60264 1052 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-201ENST00000359947 CHD1LQ86WJ1 897 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 TMEM87AQ8NBN3 555 aa18.36■□□□□ 0.53
PTPRF-201ENST00000359947 TSPY26PQ9H489 355 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 MCM2P49736 904 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 RANBP6O60518 1105 aaKnown RBP18.35■□□□□ 0.53
PTPRF-201ENST00000359947 EPRSP07814 1512 aaKnown RBP18.35■□□□□ 0.53
PTPRF-201ENST00000359947 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 CDKL5O76039 1030 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 FCHSD2O94868 740 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 LIG1P18858 919 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 TNMDQ9H2S6 317 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 HECW1Q76N89 1606 aa18.35■□□□□ 0.53
PTPRF-201ENST00000359947 PPP6R1Q9UPN7 881 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 RPGRIP1LQ68CZ1 1315 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 UBAP1LF5GYI3 381 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 TMPOP42166 694 aaKnown RBP18.34■□□□□ 0.53
PTPRF-201ENST00000359947 PPFIBP1Q86W92 1011 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 ARHGEF11O15085 1522 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 MVPQ14764 893 aaKnown RBP18.34■□□□□ 0.53
PTPRF-201ENST00000359947 WDR63Q8IWG1 891 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 CCDC97Q96F63 343 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-201ENST00000359947 RFC4P35249 363 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 ACBD3Q9H3P7 528 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 CDK13Q14004 1512 aaKnown RBP18.34■□□□□ 0.53
PTPRF-201ENST00000359947 CASTP20810 708 aaKnown RBP18.34■□□□□ 0.53
PTPRF-201ENST00000359947 AKAP2Q9Y2D5 859 aa18.34■□□□□ 0.53
PTPRF-201ENST00000359947 TROQ12816 1431 aaPredicted RBP18.33■□□□□ 0.53
PTPRF-201ENST00000359947 PIP4K2AP48426 406 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-201ENST00000359947 LARP1Q6PKG0 1096 aaKnown RBP18.33■□□□□ 0.52
PTPRF-201ENST00000359947 F6X3S4 739 aa18.33■□□□□ 0.52
PTPRF-201ENST00000359947 EHBP1L1Q8N3D4 1523 aa18.33■□□□□ 0.52
PTPRF-201ENST00000359947 LETM1O95202 739 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-201ENST00000359947 ZNF444Q8N0Y2 327 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-201ENST00000359947 ARAP1Q96P48 1450 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 TRAK2O60296 914 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 TAF7Q15545 349 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-201ENST00000359947 CCDC8Q9H0W5 538 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-201ENST00000359947 NAPBQ9H115 298 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 ZNF287Q9HBT7 754 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 TNIP1Q15025 636 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 NFKBIBQ15653 356 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 TMEM57Q8N5G2 664 aa18.32■□□□□ 0.52
PTPRF-201ENST00000359947 JARID2Q92833 1246 aaPredicted RBP18.32■□□□□ 0.52
PTPRF-201ENST00000359947 C8orf37Q96NL8 207 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms