RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 VPS8Q8N3P4 1428 aa10.75□□□□□ -0.69
VPS13A-201ENST00000355766 GDF9O60383 454 aa10.75□□□□□ -0.69
VPS13A-201ENST00000355766 CCDC102AQ96A19 550 aa10.75□□□□□ -0.69
VPS13A-201ENST00000355766 ARHGEF5Q12774 1597 aa10.74□□□□□ -0.69
VPS13A-201ENST00000355766 MROH1Q8NDA8 1641 aa10.74□□□□□ -0.69
VPS13A-201ENST00000355766 EIF2AK4Q9P2K8 1649 aaKnown RBP10.74□□□□□ -0.69
VPS13A-201ENST00000355766 GRIPAP1Q4V328 841 aa10.74□□□□□ -0.69
VPS13A-201ENST00000355766 RNF19BQ6ZMZ0 732 aa10.74□□□□□ -0.69
VPS13A-201ENST00000355766 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.74□□□□□ -0.69
VPS13A-201ENST00000355766 PRDM9Q9NQV7 894 aa10.74□□□□□ -0.69
VPS13A-201ENST00000355766 FCF1Q9Y324 198 aaKnown RBP10.74□□□□□ -0.69
VPS13A-201ENST00000355766 TNFRSF10AO00220 468 aa10.73□□□□□ -0.69
VPS13A-201ENST00000355766 TMEM94Q12767 1356 aa10.73□□□□□ -0.69
VPS13A-201ENST00000355766 LTKP29376 864 aa10.72□□□□□ -0.69
VPS13A-201ENST00000355766 KDM4AO75164 1064 aa10.71□□□□□ -0.69
VPS13A-201ENST00000355766 MAST1Q9Y2H9 1570 aa10.71□□□□□ -0.69
VPS13A-201ENST00000355766 NWD1Q149M9 1564 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 PRDM15P57071 1507 aaPredicted RBP10.7□□□□□ -0.7
VPS13A-201ENST00000355766 NKTRP30414 1462 aaKnown RBP10.7□□□□□ -0.7
VPS13A-201ENST00000355766 JCADQ9P266 1359 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 DGAT1O75907 488 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 RPIAP49247 311 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 MSS51Q4VC12 460 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 PKDCCQ504Y2 493 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 PKD2L1Q9P0L9 805 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 CEP152O94986 1710 aa10.7□□□□□ -0.7
VPS13A-201ENST00000355766 TXNDC2Q86VQ3 553 aa10.69□□□□□ -0.7
VPS13A-201ENST00000355766 LRP6O75581 1613 aa10.69□□□□□ -0.7
VPS13A-201ENST00000355766 ARHGAP31Q2M1Z3 1444 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 TMEM2Q9UHN6 1383 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 PHLPP1O60346 1717 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 MYT1Q01538 1121 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 FOXC1Q12948 553 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 Q3C1V9 767 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 HLA-CQ95604 372 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 EID1Q9Y6B2 187 aa10.68□□□□□ -0.7
VPS13A-201ENST00000355766 COL16A1Q07092 1604 aaPredicted RBP10.68□□□□□ -0.7
VPS13A-201ENST00000355766 PIK3C2BO00750 1634 aa10.67□□□□□ -0.7
VPS13A-201ENST00000355766 LMOD2Q6P5Q4 547 aa10.67□□□□□ -0.7
VPS13A-201ENST00000355766 GPCPD1Q9NPB8 672 aa10.67□□□□□ -0.7
VPS13A-201ENST00000355766 FAM187AA6NFU0 413 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 CD2BP2O95400 341 aaKnown RBP10.66□□□□□ -0.7
VPS13A-201ENST00000355766 TSPY4P0CV99 314 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 TSPY10P0CW01 314 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 KCNA6P17658 529 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 CLCN1P35523 988 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 USP46P62068 366 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 ZNF787Q6DD87 383 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 FAM217BQ9NTX9 383 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-201ENST00000355766 EFCAB6Q5THR3 1501 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 TET3O43151 1660 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 KDM5AP29375 1690 aaKnown RBP10.66□□□□□ -0.7
VPS13A-201ENST00000355766 FGD6Q6ZV73 1430 aa10.66□□□□□ -0.7
VPS13A-201ENST00000355766 MSH6P52701 1360 aa10.65□□□□□ -0.7
VPS13A-201ENST00000355766 CDK12Q9NYV4 1490 aaPredicted RBP10.65□□□□□ -0.7
VPS13A-201ENST00000355766 DUOX2Q9NRD8 1548 aa10.64□□□□□ -0.71
VPS13A-201ENST00000355766 SPATA31A6Q5VVP1 1343 aa10.64□□□□□ -0.71
VPS13A-201ENST00000355766 HOXA2O43364 376 aa10.64□□□□□ -0.71
VPS13A-201ENST00000355766 MMP16P51512 607 aa10.64□□□□□ -0.71
VPS13A-201ENST00000355766 USB1Q9BQ65 265 aaKnown RBP10.64□□□□□ -0.71
VPS13A-201ENST00000355766 ZNF772Q68DY9 489 aaPredicted RBP10.63□□□□□ -0.71
VPS13A-201ENST00000355766 PROSER2Q86WR7 435 aaPredicted RBP10.63□□□□□ -0.71
VPS13A-201ENST00000355766 TRIM52Q96A61 297 aa10.63□□□□□ -0.71
VPS13A-201ENST00000355766 REPIN1Q9BWE0 567 aaKnown RBP10.63□□□□□ -0.71
VPS13A-201ENST00000355766 AHDC1Q5TGY3 1603 aaPredicted RBP10.62□□□□□ -0.71
VPS13A-201ENST00000355766 GUCA2AQ02747 115 aa10.62□□□□□ -0.71
VPS13A-201ENST00000355766 KRI1Q8N9T8 703 aaKnown RBP10.62□□□□□ -0.71
VPS13A-201ENST00000355766 SHPRHQ149N8 1683 aa10.62□□□□□ -0.71
VPS13A-201ENST00000355766 ADGRB3O60242 1522 aa10.62□□□□□ -0.71
VPS13A-201ENST00000355766 ERBINQ96RT1 1412 aa10.61□□□□□ -0.71
VPS13A-201ENST00000355766 ZBTB24O43167 697 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-201ENST00000355766 MEX3CQ5U5Q3 659 aaKnown RBP10.61□□□□□ -0.71
VPS13A-201ENST00000355766 SLC26A8Q96RN1 970 aa10.61□□□□□ -0.71
VPS13A-201ENST00000355766 SLAIN2Q9P270 581 aa10.61□□□□□ -0.71
VPS13A-201ENST00000355766 DXOO77932 396 aaKnown RBP10.6□□□□□ -0.71
VPS13A-201ENST00000355766 TRIM26Q12899 539 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-201ENST00000355766 BARGINQ6ZT62 677 aa10.6□□□□□ -0.71
VPS13A-201ENST00000355766 SRCAPQ6ZRS2 3230 aa10.6□□□□□ -0.71
VPS13A-201ENST00000355766 LMTK2Q8IWU2 1503 aa10.59□□□□□ -0.71
VPS13A-201ENST00000355766 ZMYND10O75800 440 aa10.59□□□□□ -0.71
VPS13A-201ENST00000355766 TOR4AQ9NXH8 423 aa10.59□□□□□ -0.71
VPS13A-201ENST00000355766 DIP2AQ14689 1571 aa10.58□□□□□ -0.72
VPS13A-201ENST00000355766 KIF15Q9NS87 1388 aa10.58□□□□□ -0.72
VPS13A-201ENST00000355766 RXRBP28702 533 aa10.58□□□□□ -0.72
VPS13A-201ENST00000355766 NUTM1Q86Y26 1132 aa10.58□□□□□ -0.72
VPS13A-201ENST00000355766 ZC3H15Q8WU90 426 aaKnown RBP10.58□□□□□ -0.72
VPS13A-201ENST00000355766 NCOA3Q9Y6Q9 1424 aa10.58□□□□□ -0.72
VPS13A-201ENST00000355766 POTECB2RU33 542 aa10.57□□□□□ -0.72
VPS13A-201ENST00000355766 ST8SIA5O15466 376 aa10.57□□□□□ -0.72
VPS13A-201ENST00000355766 CYP4X1Q8N118 509 aa10.57□□□□□ -0.72
VPS13A-201ENST00000355766 SYMPKQ92797 1274 aaKnown RBP10.57□□□□□ -0.72
VPS13A-201ENST00000355766 AAASQ9NRG9 546 aa10.57□□□□□ -0.72
VPS13A-201ENST00000355766 RGS12O14924 1447 aa10.57□□□□□ -0.72
VPS13A-201ENST00000355766 SSTR3P32745 418 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-201ENST00000355766 IDI1Q13907 227 aa10.56□□□□□ -0.72
VPS13A-201ENST00000355766 NOS1P29475 1434 aa10.56□□□□□ -0.72
VPS13A-201ENST00000355766 MYOM3Q5VTT5 1437 aa10.56□□□□□ -0.72
VPS13A-201ENST00000355766 PLEKHG1Q9ULL1 1385 aa10.55□□□□□ -0.72
VPS13A-201ENST00000355766 CROCC2H7BZ55 1655 aa10.55□□□□□ -0.72
VPS13A-201ENST00000355766 TRIM32Q13049 653 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms