RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 AEBP1Q8IUX7 1158 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 CDCA7LQ96GN5 454 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 GOLGA2Q08379 1002 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 WDR63Q8IWG1 891 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 CABLES1Q8TDN4 633 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 AXIN2Q9Y2T1 843 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 PHLPP1O60346 1717 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 LRRC59Q96AG4 307 aaKnown RBP12.93□□□□□ -0.34
SYNE1-203ENST00000354674 GZF1Q9H116 711 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-203ENST00000354674 TRIM35Q9UPQ4 493 aa12.93□□□□□ -0.34
SYNE1-203ENST00000354674 SLFN5Q08AF3 891 aa12.93□□□□□ -0.34
SYNE1-203ENST00000354674 NFE2L2Q16236 605 aa12.93□□□□□ -0.34
SYNE1-203ENST00000354674 RRP7AQ9Y3A4 280 aaKnown RBP12.93□□□□□ -0.34
SYNE1-203ENST00000354674 RGPD2P0DJD1 1756 aa12.93□□□□□ -0.34
SYNE1-203ENST00000354674 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
SYNE1-203ENST00000354674 RRP9O43818 475 aaKnown RBP12.92□□□□□ -0.34
SYNE1-203ENST00000354674 ZC3H6P61129 1189 aaKnown RBP12.92□□□□□ -0.34
SYNE1-203ENST00000354674 KIAA0232Q92628 1395 aa12.92□□□□□ -0.34
SYNE1-203ENST00000354674 DLG5Q8TDM6 1919 aa12.92□□□□□ -0.34
SYNE1-203ENST00000354674 DUSP27Q5VZP5 1158 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 EXOC6Q8TAG9 804 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 SPINK5Q9NQ38 1064 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-203ENST00000354674 RIPK4P57078 832 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 NBPF6Q5VWK0 638 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 NBPF4Q96M43 638 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 ERBB3P21860 1342 aa12.91□□□□□ -0.34
SYNE1-203ENST00000354674 E9PSI1 815 aa12.9□□□□□ -0.34
SYNE1-203ENST00000354674 ANKRD24Q8TF21 1146 aa12.9□□□□□ -0.34
SYNE1-203ENST00000354674 NEUROD2Q15784 382 aa12.9□□□□□ -0.34
SYNE1-203ENST00000354674 CERKQ8TCT0 537 aa12.9□□□□□ -0.34
SYNE1-203ENST00000354674 IL16Q14005 1332 aa12.89□□□□□ -0.35
SYNE1-203ENST00000354674 LTV1Q96GA3 475 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-203ENST00000354674 BACH2Q9BYV9 841 aa12.89□□□□□ -0.35
SYNE1-203ENST00000354674 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
SYNE1-203ENST00000354674 PANK2Q9BZ23 570 aa12.88□□□□□ -0.35
SYNE1-203ENST00000354674 ZHX1Q9UKY1 873 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-203ENST00000354674 PLEKHG2Q9H7P9 1386 aa12.88□□□□□ -0.35
SYNE1-203ENST00000354674 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
SYNE1-203ENST00000354674 ZBTB7CA1YPR0 619 aa12.88□□□□□ -0.35
SYNE1-203ENST00000354674 UBAP1LF5GYI3 381 aa12.87□□□□□ -0.35
SYNE1-203ENST00000354674 LMOD3Q0VAK6 560 aa12.86□□□□□ -0.35
SYNE1-203ENST00000354674 COL5A2P05997 1499 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-203ENST00000354674 COL14A1Q05707 1796 aaKnown RBP12.86□□□□□ -0.35
SYNE1-203ENST00000354674 CHRNA2Q15822 529 aa12.86□□□□□ -0.35
SYNE1-203ENST00000354674 MTHFSDQ2M296 383 aaKnown RBP12.86□□□□□ -0.35
SYNE1-203ENST00000354674 PRDM10Q9NQV6 1147 aa12.86□□□□□ -0.35
SYNE1-203ENST00000354674 SLKQ9H2G2 1235 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-203ENST00000354674 CHMP4BQ9H444 224 aaKnown RBP12.85□□□□□ -0.35
SYNE1-203ENST00000354674 PIP4K2BP78356 416 aa12.85□□□□□ -0.35
SYNE1-203ENST00000354674 USHBP1Q8N6Y0 703 aa12.85□□□□□ -0.35
SYNE1-203ENST00000354674 GAS2L2Q8NHY3 880 aa12.85□□□□□ -0.35
SYNE1-203ENST00000354674 PRDM11Q9NQV5 511 aa12.85□□□□□ -0.35
SYNE1-203ENST00000354674 LRRC37A3O60309 1634 aa12.84□□□□□ -0.35
SYNE1-203ENST00000354674 FAM83GA6ND36 823 aa12.84□□□□□ -0.35
SYNE1-203ENST00000354674 HTATSF1O43719 755 aaKnown RBP12.84□□□□□ -0.35
SYNE1-203ENST00000354674 ZNF853P0CG23 659 aa12.83□□□□□ -0.35
SYNE1-203ENST00000354674 BBXQ8WY36 941 aaPredicted RBP12.83□□□□□ -0.35
SYNE1-203ENST00000354674 MYH16Q9H6N6 1097 aa12.83□□□□□ -0.35
SYNE1-203ENST00000354674 CALD1Q05682 793 aaKnown RBP12.83□□□□□ -0.36
SYNE1-203ENST00000354674 RCAN3Q9UKA8 241 aa12.83□□□□□ -0.36
SYNE1-203ENST00000354674 WDR17Q8IZU2 1322 aa12.83□□□□□ -0.36
SYNE1-203ENST00000354674 SPRYD3Q8NCJ5 442 aa12.83□□□□□ -0.36
SYNE1-203ENST00000354674 PLIN1O60240 522 aa12.82□□□□□ -0.36
SYNE1-203ENST00000354674 HAP1P54257 671 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-203ENST00000354674 MAPK8IP2Q13387 824 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-203ENST00000354674 CRB1P82279 1406 aa12.82□□□□□ -0.36
SYNE1-203ENST00000354674 IFT57Q9NWB7 429 aa12.81□□□□□ -0.36
SYNE1-203ENST00000354674 PKD1L3Q7Z443 1732 aa12.81□□□□□ -0.36
SYNE1-203ENST00000354674 AMOTQ4VCS5 1084 aa12.81□□□□□ -0.36
SYNE1-203ENST00000354674 ADAMTS7Q9UKP4 1686 aa12.81□□□□□ -0.36
SYNE1-203ENST00000354674 MAP3K5Q99683 1374 aa12.81□□□□□ -0.36
SYNE1-203ENST00000354674 TCERG1O14776 1098 aaKnown RBP12.8□□□□□ -0.36
SYNE1-203ENST00000354674 PLCH1Q4KWH8 1693 aa12.8□□□□□ -0.36
SYNE1-203ENST00000354674 MEGF6O75095 1541 aa12.8□□□□□ -0.36
SYNE1-203ENST00000354674 PAXIP1Q6ZW49 1069 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-203ENST00000354674 DDRGK1Q96HY6 314 aa12.8□□□□□ -0.36
SYNE1-203ENST00000354674 CFAP44Q96MT7 982 aa12.8□□□□□ -0.36
SYNE1-203ENST00000354674 THUMPD2Q9BTF0 503 aaKnown RBP12.8□□□□□ -0.36
SYNE1-203ENST00000354674 NLRP2Q9NX02 1062 aa12.8□□□□□ -0.36
SYNE1-203ENST00000354674 GNAT3A8MTJ3 354 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 PLEKHO1Q53GL0 409 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-203ENST00000354674 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.79□□□□□ -0.36
SYNE1-203ENST00000354674 JCADQ9P266 1359 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 CT47B1P0C2W7 299 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-203ENST00000354674 GNAI1P63096 354 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 PLCD3Q8N3E9 789 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 CARD10Q9BWT7 1032 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 NRAPQ86VF7 1730 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 PARP4Q9UKK3 1724 aaKnown RBP12.79□□□□□ -0.36
SYNE1-203ENST00000354674 CEMIPQ8WUJ3 1361 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 DCTN1Q14203 1278 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 PRDM4Q9UKN5 801 aa12.79□□□□□ -0.36
SYNE1-203ENST00000354674 OVOS2A0A0G2JMS6 1433 aa12.78□□□□□ -0.36
SYNE1-203ENST00000354674 CSB-PGBD3P0DP91 1061 aa12.78□□□□□ -0.36
SYNE1-203ENST00000354674 MCM10Q7L590 875 aa12.78□□□□□ -0.36
SYNE1-203ENST00000354674 TSR2Q969E8 191 aaKnown RBP12.78□□□□□ -0.36
SYNE1-203ENST00000354674 NWD2Q9ULI1 1742 aa12.78□□□□□ -0.36
SYNE1-203ENST00000354674 CHL1O00533 1208 aa12.77□□□□□ -0.36
SYNE1-203ENST00000354674 AKAP4Q5JQC9 854 aa12.77□□□□□ -0.36
SYNE1-203ENST00000354674 IL17REQ8NFR9 667 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms