RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZNF526Q8TF50 670 aaPredicted RBP16.02■□□□□ 0.15
RTN3-204ENST00000354497 MSL1Q68DK7 614 aa16.01■□□□□ 0.15
RTN3-204ENST00000354497 LTV1Q96GA3 475 aaPredicted RBP16.01■□□□□ 0.15
RTN3-204ENST00000354497 GPBP1L1Q9HC44 474 aaPredicted RBP16.01■□□□□ 0.15
RTN3-204ENST00000354497 QSER1Q2KHR3 1735 aa16■□□□□ 0.15
RTN3-204ENST00000354497 LTN1O94822 1766 aa15.99■□□□□ 0.15
RTN3-204ENST00000354497 TUBGCP6Q96RT7 1819 aa15.99■□□□□ 0.15
RTN3-204ENST00000354497 PRIM1P49642 420 aaKnown RBP15.99■□□□□ 0.15
RTN3-204ENST00000354497 KAT6BQ8WYB5 2073 aa15.99■□□□□ 0.15
RTN3-204ENST00000354497 CCNL1Q9UK58 526 aaPredicted RBP15.98■□□□□ 0.15
RTN3-204ENST00000354497 USP31Q70CQ4 1352 aa15.98■□□□□ 0.15
RTN3-204ENST00000354497 ROCK2O75116 1388 aaKnown RBP15.97■□□□□ 0.15
RTN3-204ENST00000354497 COL24A1Q17RW2 1714 aa15.97■□□□□ 0.15
RTN3-204ENST00000354497 MON2Q7Z3U7 1717 aa15.97■□□□□ 0.15
RTN3-204ENST00000354497 TMC1Q8TDI8 760 aa15.97■□□□□ 0.15
RTN3-204ENST00000354497 ANKRD36BQ8N2N9 1353 aa15.95■□□□□ 0.14
RTN3-204ENST00000354497 HSPA6P17066 643 aa15.95■□□□□ 0.14
RTN3-204ENST00000354497 HDGFL2Q7Z4V5 671 aaPredicted RBP15.95■□□□□ 0.14
RTN3-204ENST00000354497 COL23A1Q86Y22 540 aaPredicted RBP15.95■□□□□ 0.14
RTN3-204ENST00000354497 L3MBTL2Q969R5 705 aa15.95■□□□□ 0.14
RTN3-204ENST00000354497 DOT1LQ8TEK3 1739 aa15.95■□□□□ 0.14
RTN3-204ENST00000354497 WWC3Q9ULE0 1092 aa15.94■□□□□ 0.14
RTN3-204ENST00000354497 CEP350Q5VT06 3117 aa15.93■□□□□ 0.14
RTN3-204ENST00000354497 GOLGB1Q14789 3259 aaKnown RBP15.93■□□□□ 0.14
RTN3-204ENST00000354497 USP54Q70EL1 1684 aa15.92■□□□□ 0.14
RTN3-204ENST00000354497 NSD2O96028 1365 aa15.92■□□□□ 0.14
RTN3-204ENST00000354497 USP47Q96K76 1375 aa15.92■□□□□ 0.14
RTN3-204ENST00000354497 SBNO2Q9Y2G9 1366 aa15.92■□□□□ 0.14
RTN3-204ENST00000354497 ZCRB1Q8TBF4 217 aaKnown RBP15.91■□□□□ 0.14
RTN3-204ENST00000354497 IP6K1Q92551 441 aa15.91■□□□□ 0.14
RTN3-204ENST00000354497 LY75O60449 1722 aa15.9■□□□□ 0.14
RTN3-204ENST00000354497 SAMD1Q6SPF0 538 aaPredicted RBP15.9■□□□□ 0.14
RTN3-204ENST00000354497 CD2APQ9Y5K6 639 aa15.9■□□□□ 0.14
RTN3-204ENST00000354497 CD163L1Q9NR16 1453 aa15.89■□□□□ 0.13
RTN3-204ENST00000354497 FAM208AQ9UK61 1670 aaKnown RBP15.89■□□□□ 0.13
RTN3-204ENST00000354497 ADCY9O60503 1353 aa15.89■□□□□ 0.13
RTN3-204ENST00000354497 EDC4Q6P2E9 1401 aaKnown RBP15.88■□□□□ 0.13
RTN3-204ENST00000354497 AMPHP49418 695 aa15.88■□□□□ 0.13
RTN3-204ENST00000354497 SLC12A5Q9H2X9 1139 aa15.88■□□□□ 0.13
RTN3-204ENST00000354497 NEUROD1Q13562 356 aa15.87■□□□□ 0.13
RTN3-204ENST00000354497 TERF2IPQ9NYB0 399 aa15.87■□□□□ 0.13
RTN3-204ENST00000354497 MEGF6O75095 1541 aa15.87■□□□□ 0.13
RTN3-204ENST00000354497 IGSF1Q8N6C5 1336 aa15.86■□□□□ 0.13
RTN3-204ENST00000354497 A0A1W2PP64 1363 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 PHF14O94880 888 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 HOXC9P31274 260 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 USHBP1Q8N6Y0 703 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 FLAD1Q8NFF5 587 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 SIN3AQ96ST3 1273 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 SPINK5Q9NQ38 1064 aaPredicted RBP15.85■□□□□ 0.13
RTN3-204ENST00000354497 C5P01031 1676 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 AK7Q96M32 723 aa15.85■□□□□ 0.13
RTN3-204ENST00000354497 MAP3K19Q56UN5 1328 aa15.84■□□□□ 0.13
RTN3-204ENST00000354497 FBLN1P23142 703 aa15.84■□□□□ 0.13
RTN3-204ENST00000354497 COG3Q96JB2 828 aa15.84■□□□□ 0.13
RTN3-204ENST00000354497 PALLDQ8WX93 1383 aa15.83■□□□□ 0.12
RTN3-204ENST00000354497 KIF3CO14782 793 aa15.82■□□□□ 0.12
RTN3-204ENST00000354497 MPRIPQ6WCQ1 1025 aa15.82■□□□□ 0.12
RTN3-204ENST00000354497 RAPGEF4Q8WZA2 1011 aa15.82■□□□□ 0.12
RTN3-204ENST00000354497 CARD11Q9BXL7 1154 aa15.82■□□□□ 0.12
RTN3-204ENST00000354497 RGPD2P0DJD1 1756 aa15.82■□□□□ 0.12
RTN3-204ENST00000354497 TATP17735 454 aaPredicted RBP15.81■□□□□ 0.12
RTN3-204ENST00000354497 APLP1P51693 650 aa15.81■□□□□ 0.12
RTN3-204ENST00000354497 SMIM5Q71RC9 77 aa15.81■□□□□ 0.12
RTN3-204ENST00000354497 NBPF6Q5VWK0 638 aa15.8■□□□□ 0.12
RTN3-204ENST00000354497 NBPF4Q96M43 638 aa15.8■□□□□ 0.12
RTN3-204ENST00000354497 HMGB2P26583 209 aaKnown RBP15.79■□□□□ 0.12
RTN3-204ENST00000354497 SMG6Q86US8 1419 aaKnown RBP15.79■□□□□ 0.12
RTN3-204ENST00000354497 CAPN15O75808 1086 aa15.78■□□□□ 0.12
RTN3-204ENST00000354497 RRS1Q15050 365 aaKnown RBP15.78■□□□□ 0.12
RTN3-204ENST00000354497 PCDH11XQ9BZA7 1347 aa15.78■□□□□ 0.12
RTN3-204ENST00000354497 PCDH11YQ9BZA8 1340 aa15.78■□□□□ 0.12
RTN3-204ENST00000354497 C4BP0C0L5 1744 aa15.78■□□□□ 0.12
RTN3-204ENST00000354497 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.77■□□□□ 0.12
RTN3-204ENST00000354497 AMIGO3Q86WK7 504 aa15.77■□□□□ 0.12
RTN3-204ENST00000354497 CGNL1Q0VF96 1302 aa15.77■□□□□ 0.12
RTN3-204ENST00000354497 SMARCC1Q92922 1105 aaPredicted RBP15.77■□□□□ 0.11
RTN3-204ENST00000354497 RTL1A6NKG5 1358 aa15.76■□□□□ 0.11
RTN3-204ENST00000354497 NSD3Q9BZ95 1437 aa15.75■□□□□ 0.11
RTN3-204ENST00000354497 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
RTN3-204ENST00000354497 TOMM70O94826 608 aa15.74■□□□□ 0.11
RTN3-204ENST00000354497 TOGARAM1Q9Y4F4 1720 aa15.73■□□□□ 0.11
RTN3-204ENST00000354497 BCS1LQ9Y276 419 aa15.73■□□□□ 0.11
RTN3-204ENST00000354497 GNPATO15228 680 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 SSFA2P28290 1259 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 ARHGAP27Q6ZUM4 889 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 LINC00116Q8NCU8 138 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 GGNBP2Q9H3C7 697 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 NMRK2Q9NPI5 230 aa15.72■□□□□ 0.11
RTN3-204ENST00000354497 CYP27B1O15528 508 aa15.71■□□□□ 0.11
RTN3-204ENST00000354497 C16orf71Q8IYS4 520 aaPredicted RBP15.71■□□□□ 0.11
RTN3-204ENST00000354497 DNAJC5GQ8N7S2 189 aa15.71■□□□□ 0.11
RTN3-204ENST00000354497 PIGBQ92521 554 aa15.71■□□□□ 0.11
RTN3-204ENST00000354497 CICQ96RK0 1608 aaPredicted RBP15.7■□□□□ 0.1
RTN3-204ENST00000354497 UBR3Q6ZT12 1888 aa15.7■□□□□ 0.1
RTN3-204ENST00000354497 MMP10P09238 476 aa15.7■□□□□ 0.1
RTN3-204ENST00000354497 HTRA3P83110 453 aa15.7■□□□□ 0.1
RTN3-204ENST00000354497 HSP90AB2PQ58FF8 381 aa15.7■□□□□ 0.1
RTN3-204ENST00000354497 LOC102724428A0A0B4J2F2 783 aa15.69■□□□□ 0.1
RTN3-204ENST00000354497 A0A0G2JLW4 131 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms