RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 PLXNC1O60486 1568 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 INO80Q9ULG1 1556 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-203ENST00000349748 SRPK2P78362 688 aaKnown RBP12.88□□□□□ -0.35
CAPN3-203ENST00000349748 GPATCH11Q8N954 259 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 SPC24Q8NBT2 197 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 ZNF622Q969S3 477 aaKnown RBP eCLIP12.88□□□□□ -0.35
CAPN3-203ENST00000349748 HECW2Q9P2P5 1572 aa12.87□□□□□ -0.35
CAPN3-203ENST00000349748 BANK1Q8NDB2 785 aa12.87□□□□□ -0.35
CAPN3-203ENST00000349748 C16orf45Q96MC5 204 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 CHGAP10645 457 aaKnown RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 MVPQ14764 893 aaKnown RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 FOXD4L6Q3SYB3 417 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 AXDND1Q5T1B0 1012 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 FOXD4L3Q6VB84 417 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 RBM6P78332 1123 aaKnown RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 NOL10Q9BSC4 688 aaKnown RBP12.87□□□□□ -0.35
CAPN3-203ENST00000349748 ZNF446Q9NWS9 450 aa12.87□□□□□ -0.35
CAPN3-203ENST00000349748 FRMPD1Q5SYB0 1578 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 NEK11Q8NG66 645 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 MYCBPQ99417 103 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-203ENST00000349748 HCLS1P14317 486 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-203ENST00000349748 ICE2Q659A1 982 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 SYT10Q6XYQ8 523 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 TBC1D9Q6ZT07 1266 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 LCMT1Q9UIC8 334 aa12.86□□□□□ -0.35
CAPN3-203ENST00000349748 RICTORQ6R327 1708 aa12.85□□□□□ -0.35
CAPN3-203ENST00000349748 MBD3O95983 291 aa12.85□□□□□ -0.35
CAPN3-203ENST00000349748 ESF1Q9H501 851 aaKnown RBP12.85□□□□□ -0.35
CAPN3-203ENST00000349748 TMED8Q6PL24 325 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-203ENST00000349748 SMC4Q9NTJ3 1288 aa12.85□□□□□ -0.35
CAPN3-203ENST00000349748 SYCP1Q15431 976 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 RTF1Q92541 710 aaKnown RBP12.84□□□□□ -0.35
CAPN3-203ENST00000349748 GTF3C6Q969F1 213 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 NCAPGQ9BPX3 1015 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 RRP7AQ9Y3A4 280 aaKnown RBP12.84□□□□□ -0.35
CAPN3-203ENST00000349748 LAMC1P11047 1609 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 ABCA6Q8N139 1617 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 MAGI2Q86UL8 1455 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 GDPD2Q9HCC8 539 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 POLKQ9UBT6 870 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 SMTNL1A8MU46 457 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 FBXO38Q6PIJ6 1188 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 FAM53CQ9NYF3 392 aa12.84□□□□□ -0.35
CAPN3-203ENST00000349748 UNC13BO14795 1591 aa12.83□□□□□ -0.36
CAPN3-203ENST00000349748 AP5Z1O43299 807 aa12.83□□□□□ -0.36
CAPN3-203ENST00000349748 BRPF1P55201 1214 aaPredicted RBP12.83□□□□□ -0.36
CAPN3-203ENST00000349748 KNSTRNQ9Y448 316 aa12.83□□□□□ -0.36
CAPN3-203ENST00000349748 GADD45BO75293 160 aaPredicted RBP12.83□□□□□ -0.36
CAPN3-203ENST00000349748 CCDC112Q8NEF3 446 aa12.83□□□□□ -0.36
CAPN3-203ENST00000349748 ZNF397Q8NF99 534 aaPredicted RBP12.83□□□□□ -0.36
CAPN3-203ENST00000349748 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.83□□□□□ -0.36
CAPN3-203ENST00000349748 ATP10AO60312 1499 aa12.83□□□□□ -0.36
CAPN3-203ENST00000349748 TMF1P82094 1093 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 CARD10Q9BWT7 1032 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 DIP2CQ9Y2E4 1556 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 MYO1CO00159 1063 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 NPHP1O15259 732 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 HDAC1Q13547 482 aaPredicted RBP12.82□□□□□ -0.36
CAPN3-203ENST00000349748 UVSSAQ2YD98 709 aa12.82□□□□□ -0.36
CAPN3-203ENST00000349748 SMARCA5O60264 1052 aaPredicted RBP12.81□□□□□ -0.36
CAPN3-203ENST00000349748 TNNT1P13805 278 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 CASQ1P31415 396 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 SART3Q15020 963 aaKnown RBP12.81□□□□□ -0.36
CAPN3-203ENST00000349748 ZNF592Q92610 1267 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 DRC1Q96MC2 740 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 KDM4AO75164 1064 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 FBXO31Q5XUX0 539 aaPredicted RBP12.81□□□□□ -0.36
CAPN3-203ENST00000349748 KRBA2Q6ZNG9 492 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 U2SURPO15042 1029 aaKnown RBP12.81□□□□□ -0.36
CAPN3-203ENST00000349748 BMP2KLQ5H9B9 411 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 ITPRIPQ8IWB1 547 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 FAM184AQ8NB25 1140 aa12.81□□□□□ -0.36
CAPN3-203ENST00000349748 REC8O95072 547 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 PTGS1P23219 599 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 GUCY2CP25092 1073 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
CAPN3-203ENST00000349748 KIF1BPQ96EK5 621 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 NUCB1Q02818 461 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 LRMPQ12912 555 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 ELF2Q15723 593 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 SYAP1Q96A49 352 aaPredicted RBP12.8□□□□□ -0.36
CAPN3-203ENST00000349748 IFT57Q9NWB7 429 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 ZNF215Q9UL58 517 aaPredicted RBP12.8□□□□□ -0.36
CAPN3-203ENST00000349748 CEP83Q9Y592 693 aa12.8□□□□□ -0.36
CAPN3-203ENST00000349748 CWC22Q9HCG8 908 aaKnown RBP12.79□□□□□ -0.36
CAPN3-203ENST00000349748 IQGAP3Q86VI3 1631 aa12.79□□□□□ -0.36
CAPN3-203ENST00000349748 RABEP1Q15276 862 aa12.79□□□□□ -0.36
CAPN3-203ENST00000349748 CHD1LQ86WJ1 897 aa12.79□□□□□ -0.36
CAPN3-203ENST00000349748 RNF17Q9BXT8 1623 aaKnown RBP12.78□□□□□ -0.36
CAPN3-203ENST00000349748 EIF2AK4Q9P2K8 1649 aaKnown RBP12.78□□□□□ -0.36
CAPN3-203ENST00000349748 SLC26A8Q96RN1 970 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 POLR3GO15318 223 aaPredicted RBP12.78□□□□□ -0.36
CAPN3-203ENST00000349748 ANKRD36BQ8N2N9 1353 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 PHF14O94880 888 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 CCDC172P0C7W6 258 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 ZKSCAN2Q63HK3 967 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 CCDC191Q8NCU4 936 aa12.78□□□□□ -0.36
CAPN3-203ENST00000349748 TSGA10IPQ3SY00 556 aa12.77□□□□□ -0.36
CAPN3-203ENST00000349748 DNAJC21Q5F1R6 531 aaKnown RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms