RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 TNRQ92752 1358 aa7.62□□□□□ -1.19
CLCN3-201ENST00000347613 TBC1D9Q6ZT07 1266 aa7.62□□□□□ -1.19
CLCN3-201ENST00000347613 APBB1O00213 710 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 MEIS3Q99687 375 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 SETD1BQ9UPS6 1966 aaKnown RBP7.61□□□□□ -1.19
CLCN3-201ENST00000347613 CHL1O00533 1208 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 GNAI1P63096 354 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 GZF1Q9H116 711 aaPredicted RBP7.61□□□□□ -1.19
CLCN3-201ENST00000347613 USP6P35125 1406 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 TSHZ3Q63HK5 1081 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 PLEKHM2Q8IWE5 1019 aa7.61□□□□□ -1.19
CLCN3-201ENST00000347613 SAMD1Q6SPF0 538 aaPredicted RBP7.6□□□□□ -1.19
CLCN3-201ENST00000347613 NECTIN2Q92692 538 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 CHAMP1Q96JM3 812 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 PANK2Q9BZ23 570 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 PIK3C2AO00443 1686 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 MSH6P52701 1360 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 IPO8O15397 1037 aaKnown RBP7.6□□□□□ -1.19
CLCN3-201ENST00000347613 RBM25P49756 843 aaKnown RBP7.6□□□□□ -1.19
CLCN3-201ENST00000347613 AMOTL2Q9Y2J4 779 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 ARHGAP45Q92619 1136 aa7.6□□□□□ -1.19
CLCN3-201ENST00000347613 EYA1Q99502 592 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 FMN2Q9NZ56 1722 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 NCOA3Q9Y6Q9 1424 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 PLEKHG3A1L390 1219 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 BMP2KLQ5H9B9 411 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 CEP85Q6P2H3 762 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 USHBP1Q8N6Y0 703 aa7.59□□□□□ -1.19
CLCN3-201ENST00000347613 NWD1Q149M9 1564 aa7.59□□□□□ -1.2
CLCN3-201ENST00000347613 PKP1Q13835 747 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 SIRT1Q96EB6 747 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 USP31Q70CQ4 1352 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 SLC4A2P04920 1241 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 MCM4P33991 863 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 INTS3Q68E01 1043 aaKnown RBP7.58□□□□□ -1.2
CLCN3-201ENST00000347613 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.58□□□□□ -1.2
CLCN3-201ENST00000347613 GAS2L2Q8NHY3 880 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 DCTPP1Q9H773 170 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 RTL1A6NKG5 1358 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 BECN1Q14457 450 aa7.58□□□□□ -1.2
CLCN3-201ENST00000347613 PNNQ9H307 717 aaKnown RBP7.58□□□□□ -1.2
CLCN3-201ENST00000347613 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.58□□□□□ -1.2
CLCN3-201ENST00000347613 RGPD2P0DJD1 1756 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 XRCC6P12956 609 aaKnown RBP eCLIP7.57□□□□□ -1.22e-6■■■■■ 34.5
CLCN3-201ENST00000347613 IL25Q9H293 177 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 PLEKHG1Q9ULL1 1385 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 KCNA6P17658 529 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 GAS2L3Q86XJ1 694 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 IL17REQ8NFR9 667 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 TNPO1Q92973 898 aaKnown RBP7.57□□□□□ -1.2
CLCN3-201ENST00000347613 CHMP4AQ9BY43 222 aa7.57□□□□□ -1.2
CLCN3-201ENST00000347613 ESF1Q9H501 851 aaKnown RBP7.56□□□□□ -1.2
CLCN3-201ENST00000347613 UPF2Q9HAU5 1272 aaKnown RBP7.56□□□□□ -1.2
CLCN3-201ENST00000347613 TUBGCP6Q96RT7 1819 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 DIP2AQ14689 1571 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 PNMA6EA0A0J9YXQ4 647 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 ZNF428Q96B54 188 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 GCC1Q96CN9 775 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 LTV1Q96GA3 475 aaPredicted RBP7.56□□□□□ -1.2
CLCN3-201ENST00000347613 RRAGDQ9NQL2 400 aaPredicted RBP7.56□□□□□ -1.2
CLCN3-201ENST00000347613 SDSP20132 328 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 TMEM132AQ24JP5 1023 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 ANKRD44Q8N8A2 993 aa7.56□□□□□ -1.2
CLCN3-201ENST00000347613 KCNQ3O43525 872 aa7.55□□□□□ -1.2
CLCN3-201ENST00000347613 SLC4A10Q6U841 1118 aa7.55□□□□□ -1.2
CLCN3-201ENST00000347613 DTNBO60941 627 aa7.55□□□□□ -1.2
CLCN3-201ENST00000347613 TTC22Q5TAA0 569 aa7.55□□□□□ -1.2
CLCN3-201ENST00000347613 XRN1Q8IZH2 1706 aaKnown RBP7.55□□□□□ -1.2
CLCN3-201ENST00000347613 SSFA2P28290 1259 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 UNC5CLQ8IV45 518 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 PHAXQ9H814 394 aaKnown RBP7.54□□□□□ -1.2
CLCN3-201ENST00000347613 EXOC6BQ9Y2D4 811 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 FSD2A1L4K1 749 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 USP26Q9BXU7 913 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 KDRP35968 1356 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 TRAK2O60296 914 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 LGR6Q9HBX8 967 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 IGSF1Q8N6C5 1336 aa7.54□□□□□ -1.2
CLCN3-201ENST00000347613 HOXC9P31274 260 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 SNX21Q969T3 373 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 API5Q9BZZ5 524 aaKnown RBP7.53□□□□□ -1.2
CLCN3-201ENST00000347613 CHMP5Q9NZZ3 219 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 TSPYL4Q9UJ04 414 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 ARHGAP23Q9P227 1491 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 ANXA1P04083 346 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 NLRP6P59044 892 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 ZGPATQ8N5A5 531 aaKnown RBP7.53□□□□□ -1.2
CLCN3-201ENST00000347613 FAM208AQ9UK61 1670 aaKnown RBP7.53□□□□□ -1.2
CLCN3-201ENST00000347613 C14orf37Q86TY3 774 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 NGDNQ8NEJ9 315 aaKnown RBP7.53□□□□□ -1.2
CLCN3-201ENST00000347613 LRRC37A3O60309 1634 aa7.53□□□□□ -1.2
CLCN3-201ENST00000347613 KIAA0232Q92628 1395 aa7.52□□□□□ -1.2
CLCN3-201ENST00000347613 SALL3Q9BXA9 1300 aa7.52□□□□□ -1.21
CLCN3-201ENST00000347613 PRAMEF22A3QJZ6 481 aa7.52□□□□□ -1.21
CLCN3-201ENST00000347613 PLCB2Q00722 1185 aa7.52□□□□□ -1.21
CLCN3-201ENST00000347613 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.52□□□□□ -1.21
CLCN3-201ENST00000347613 SLIT1O75093 1534 aa7.52□□□□□ -1.21
CLCN3-201ENST00000347613 XPCQ01831 940 aaPredicted RBP7.52□□□□□ -1.21
CLCN3-201ENST00000347613 CALD1Q05682 793 aaKnown RBP7.52□□□□□ -1.21
CLCN3-201ENST00000347613 RAB3GAP1Q15042 981 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms