RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 PER1O15534 1290 aaPredicted RBP21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 EIF4A2Q14240 407 aaKnown RBP21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 EYA1Q99502 592 aa21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 SPG7Q9UQ90 795 aa21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 MEGF6O75095 1541 aa21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 SBF2Q86WG5 1849 aa21.38■■□□□ 1.01
TSPAN4-201ENST00000346501 SYTL4Q96C24 671 aaPredicted RBP21.37■■□□□ 1.01
TSPAN4-201ENST00000346501 CNGB1Q14028 1251 aaPredicted RBP21.36■■□□□ 1.01
TSPAN4-201ENST00000346501 NPC1L1Q9UHC9 1359 aa21.36■■□□□ 1.01
TSPAN4-201ENST00000346501 KCNQ2O43526 872 aa21.35■■□□□ 1.01
TSPAN4-201ENST00000346501 PSDA5PKW4 1024 aaPredicted RBP21.33■■□□□ 1.01
TSPAN4-201ENST00000346501 ZEB1P37275 1124 aaPredicted RBP21.33■■□□□ 1.01
TSPAN4-201ENST00000346501 R3HDM1Q15032 1099 aaKnown RBP21.33■■□□□ 1.01
TSPAN4-201ENST00000346501 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.33■■□□□ 1.01
TSPAN4-201ENST00000346501 MTHFSP49914 203 aa21.32■■□□□ 1
TSPAN4-201ENST00000346501 PTF1AQ7RTS3 328 aa21.32■■□□□ 1
TSPAN4-201ENST00000346501 NHSQ6T4R5 1651 aa21.31■■□□□ 1
TSPAN4-201ENST00000346501 PRIM1P49642 420 aaKnown RBP21.31■■□□□ 1
TSPAN4-201ENST00000346501 RGPD3A6NKT7 1758 aaPredicted RBP21.31■■□□□ 1
TSPAN4-201ENST00000346501 RGPD4Q7Z3J3 1758 aa21.31■■□□□ 1
TSPAN4-201ENST00000346501 IGSF1Q8N6C5 1336 aa21.3■■□□□ 1
TSPAN4-201ENST00000346501 NCAPD2Q15021 1401 aa21.3■■□□□ 1
TSPAN4-201ENST00000346501 TXNRD1Q16881 649 aa21.3■■□□□ 1
TSPAN4-201ENST00000346501 PLEKHG2Q9H7P9 1386 aa21.29■■□□□ 1
TSPAN4-201ENST00000346501 HMGB2P26583 209 aaKnown RBP21.28■■□□□ 1
TSPAN4-201ENST00000346501 PLEKHO1Q53GL0 409 aaPredicted RBP21.28■■□□□ 1
TSPAN4-201ENST00000346501 RREB1Q92766 1687 aa21.28■■□□□ 1
TSPAN4-201ENST00000346501 IFNL2Q8IZJ0 200 aa21.27■■□□□ 1
TSPAN4-201ENST00000346501 CFAP53Q96M91 514 aa21.27■■□□□ 1
TSPAN4-201ENST00000346501 STK32BQ9NY57 414 aa21.27■■□□□ 1
TSPAN4-201ENST00000346501 CYP27B1O15528 508 aa21.26■□□□□ 0.99
TSPAN4-201ENST00000346501 DIAPH1O60610 1272 aaKnown RBP21.26■□□□□ 0.99
TSPAN4-201ENST00000346501 AMOTQ4VCS5 1084 aa21.26■□□□□ 0.99
TSPAN4-201ENST00000346501 HSP90AB1P08238 724 aaKnown RBP21.25■□□□□ 0.99
TSPAN4-201ENST00000346501 SULT6B1Q6IMI4 303 aa21.25■□□□□ 0.99
TSPAN4-201ENST00000346501 NUP188Q5SRE5 1749 aa21.24■□□□□ 0.99
TSPAN4-201ENST00000346501 IL13P35225 146 aa21.24■□□□□ 0.99
TSPAN4-201ENST00000346501 SLC27A3Q5K4L6 730 aa21.24■□□□□ 0.99
TSPAN4-201ENST00000346501 BTAF1O14981 1849 aa21.23■□□□□ 0.99
TSPAN4-201ENST00000346501 C1orf141Q5JVX7 400 aa21.23■□□□□ 0.99
TSPAN4-201ENST00000346501 DOT1LQ8TEK3 1739 aa21.23■□□□□ 0.99
TSPAN4-201ENST00000346501 PKD1L3Q7Z443 1732 aa21.22■□□□□ 0.99
TSPAN4-201ENST00000346501 SHANK3Q9BYB0 1731 aa21.22■□□□□ 0.99
TSPAN4-201ENST00000346501 NKX1-1Q15270 411 aaPredicted RBP21.22■□□□□ 0.99
TSPAN4-201ENST00000346501 MPRIPQ6WCQ1 1025 aa21.22■□□□□ 0.99
TSPAN4-201ENST00000346501 PROM2Q8N271 834 aa21.22■□□□□ 0.99
TSPAN4-201ENST00000346501 PHKG2P15735 406 aa21.21■□□□□ 0.99
TSPAN4-201ENST00000346501 SMARCC1Q92922 1105 aaPredicted RBP21.21■□□□□ 0.99
TSPAN4-201ENST00000346501 ZNF530Q6P9A1 599 aaPredicted RBP21.2■□□□□ 0.98
TSPAN4-201ENST00000346501 TMOD3Q9NYL9 352 aa21.19■□□□□ 0.98
TSPAN4-201ENST00000346501 NUDCQ9Y266 331 aa21.19■□□□□ 0.98
TSPAN4-201ENST00000346501 U2SURPO15042 1029 aaKnown RBP21.18■□□□□ 0.98
TSPAN4-201ENST00000346501 SLC15A2Q16348 729 aa21.18■□□□□ 0.98
TSPAN4-201ENST00000346501 AEBP1Q8IUX7 1158 aa21.18■□□□□ 0.98
TSPAN4-201ENST00000346501 CCNL1Q9UK58 526 aaPredicted RBP21.18■□□□□ 0.98
TSPAN4-201ENST00000346501 DCAF5Q96JK2 942 aa21.17■□□□□ 0.98
TSPAN4-201ENST00000346501 KDRP35968 1356 aa21.17■□□□□ 0.98
TSPAN4-201ENST00000346501 HMOX1P09601 288 aa21.16■□□□□ 0.98
TSPAN4-201ENST00000346501 ANO8Q9HCE9 1232 aaPredicted RBP21.16■□□□□ 0.98
TSPAN4-201ENST00000346501 SPON1Q9HCB6 807 aa21.15■□□□□ 0.98
TSPAN4-201ENST00000346501 ERVV-2B6SEH9 535 aa21.14■□□□□ 0.97
TSPAN4-201ENST00000346501 PPP2R1AP30153 589 aa21.14■□□□□ 0.97
TSPAN4-201ENST00000346501 PALLDQ8WX93 1383 aa21.13■□□□□ 0.97
TSPAN4-201ENST00000346501 PIGBQ92521 554 aa21.13■□□□□ 0.97
TSPAN4-201ENST00000346501 CABP4P57796 275 aa21.12■□□□□ 0.97
TSPAN4-201ENST00000346501 DDX10Q13206 875 aaKnown RBP21.12■□□□□ 0.97
TSPAN4-201ENST00000346501 LRRC4BQ9NT99 713 aa21.12■□□□□ 0.97
TSPAN4-201ENST00000346501 SRCAPQ6ZRS2 3230 aa21.11■□□□□ 0.97
TSPAN4-201ENST00000346501 AKAP4Q5JQC9 854 aa21.11■□□□□ 0.97
TSPAN4-201ENST00000346501 TFCP2L1Q9NZI6 479 aa21.11■□□□□ 0.97
TSPAN4-201ENST00000346501 PPP1R1BQ9UD71 204 aaPredicted RBP21.11■□□□□ 0.97
TSPAN4-201ENST00000346501 LRP5O75197 1615 aa21.11■□□□□ 0.97
TSPAN4-201ENST00000346501 NEFMP07197 916 aa21.08■□□□□ 0.97
TSPAN4-201ENST00000346501 RALBP1Q15311 655 aa21.08■□□□□ 0.97
TSPAN4-201ENST00000346501 ITGB4P16144 1822 aa21.08■□□□□ 0.96
TSPAN4-201ENST00000346501 U2AF1L5P0DN76 240 aaPredicted RBP21.07■□□□□ 0.96
TSPAN4-201ENST00000346501 KCNQ4P56696 695 aa21.07■□□□□ 0.96
TSPAN4-201ENST00000346501 U2AF1Q01081 240 aaKnown RBP eCLIP21.07■□□□□ 0.96
TSPAN4-201ENST00000346501 GAS2L2Q8NHY3 880 aa21.07■□□□□ 0.96
TSPAN4-201ENST00000346501 LY75O60449 1722 aa21.07■□□□□ 0.96
TSPAN4-201ENST00000346501 AKT1S1Q96B36 256 aa21.06■□□□□ 0.96
TSPAN4-201ENST00000346501 TOGARAM1Q9Y4F4 1720 aa21.06■□□□□ 0.96
TSPAN4-201ENST00000346501 COL3A1P02461 1466 aaPredicted RBP21.06■□□□□ 0.96
TSPAN4-201ENST00000346501 LOC102724428A0A0B4J2F2 783 aa21.05■□□□□ 0.96
TSPAN4-201ENST00000346501 SIK1P57059 783 aa21.05■□□□□ 0.96
TSPAN4-201ENST00000346501 ZNF827Q17R98 1081 aa21.05■□□□□ 0.96
TSPAN4-201ENST00000346501 MTFR1LQ9H019 292 aa21.05■□□□□ 0.96
TSPAN4-201ENST00000346501 ASAP1Q9ULH1 1129 aa21.05■□□□□ 0.96
TSPAN4-201ENST00000346501 MSH5O43196 834 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 ZBTB7AO95365 584 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 FLAD1Q8NFF5 587 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 SLC16A10Q8TF71 515 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 AK7Q96M32 723 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 PAPPAQ13219 1627 aa21.04■□□□□ 0.96
TSPAN4-201ENST00000346501 ATP6V1AP38606 617 aa21.03■□□□□ 0.96
TSPAN4-201ENST00000346501 MTHFSDQ2M296 383 aaKnown RBP21.03■□□□□ 0.96
TSPAN4-201ENST00000346501 RBM42Q9BTD8 480 aaKnown RBP21.03■□□□□ 0.96
TSPAN4-201ENST00000346501 ATG3Q9NT62 314 aa21.03■□□□□ 0.96
TSPAN4-201ENST00000346501 FCHSD2O94868 740 aa21.02■□□□□ 0.96
TSPAN4-201ENST00000346501 NFATC2IPQ8NCF5 419 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms