RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 FRAT1Q92837 279 aaPredicted RBP16.4■□□□□ 0.22
CLK3-201ENST00000345005 DDRGK1Q96HY6 314 aa16.4■□□□□ 0.22
CLK3-201ENST00000345005 DCTN1Q14203 1278 aa16.4■□□□□ 0.22
CLK3-201ENST00000345005 MBIPQ9NS73 344 aa16.4■□□□□ 0.22
CLK3-201ENST00000345005 SPATA31A3Q5VYP0 1347 aa16.4■□□□□ 0.22
CLK3-201ENST00000345005 ALDH1L2Q3SY69 923 aa16.39■□□□□ 0.21
CLK3-201ENST00000345005 CRYBG1Q9Y4K1 1723 aa16.39■□□□□ 0.21
CLK3-201ENST00000345005 PLEKHG5O94827 1062 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 NBR1Q14596 966 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 SMC4Q9NTJ3 1288 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 NBPF6Q5VWK0 638 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 NBPF4Q96M43 638 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 BCL2L13Q9BXK5 485 aa16.38■□□□□ 0.21
CLK3-201ENST00000345005 CHL1O00533 1208 aa16.37■□□□□ 0.21
CLK3-201ENST00000345005 PDE4AP27815 886 aa16.37■□□□□ 0.21
CLK3-201ENST00000345005 ZKSCAN2Q63HK3 967 aa16.37■□□□□ 0.21
CLK3-201ENST00000345005 MCM10Q7L590 875 aa16.37■□□□□ 0.21
CLK3-201ENST00000345005 SSH1Q8WYL5 1049 aa16.37■□□□□ 0.21
CLK3-201ENST00000345005 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 GNAT3A8MTJ3 354 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 AAMPQ13685 434 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 ANKRD24Q8TF21 1146 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 BACH2Q9BYV9 841 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 COL18A1P39060 1754 aa16.36■□□□□ 0.21
CLK3-201ENST00000345005 VAMP4O75379 141 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 BRPF1P55201 1214 aaPredicted RBP16.35■□□□□ 0.21
CLK3-201ENST00000345005 ZC3H6P61129 1189 aaKnown RBP16.35■□□□□ 0.21
CLK3-201ENST00000345005 USHBP1Q8N6Y0 703 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 ABCC6O95255 1503 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 CRB1P82279 1406 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 SOS2Q07890 1332 aaPredicted RBP16.35■□□□□ 0.21
CLK3-201ENST00000345005 IPO8O15397 1037 aaKnown RBP16.35■□□□□ 0.21
CLK3-201ENST00000345005 PANK1Q8TE04 598 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 NCAPD2Q15021 1401 aa16.35■□□□□ 0.21
CLK3-201ENST00000345005 KIF16BQ96L93 1317 aa16.34■□□□□ 0.21
CLK3-201ENST00000345005 HAP1P54257 671 aaPredicted RBP16.34■□□□□ 0.21
CLK3-201ENST00000345005 MAP3K5Q99683 1374 aa16.34■□□□□ 0.21
CLK3-201ENST00000345005 FAM208AQ9UK61 1670 aaKnown RBP16.34■□□□□ 0.21
CLK3-201ENST00000345005 LRRC37A3O60309 1634 aa16.34■□□□□ 0.21
CLK3-201ENST00000345005 NHSL1Q5SYE7 1610 aa16.34■□□□□ 0.21
CLK3-201ENST00000345005 TWISTNBQ3B726 338 aaPredicted RBP16.33■□□□□ 0.21
CLK3-201ENST00000345005 AXIN2Q9Y2T1 843 aa16.33■□□□□ 0.21
CLK3-201ENST00000345005 LRRC59Q96AG4 307 aaKnown RBP16.33■□□□□ 0.2
CLK3-201ENST00000345005 COG6Q9Y2V7 657 aa16.33■□□□□ 0.2
CLK3-201ENST00000345005 VIRMAQ69YN4 1812 aaKnown RBP16.33■□□□□ 0.2
CLK3-201ENST00000345005 DZIP1LQ8IYY4 767 aaKnown RBP16.32■□□□□ 0.2
CLK3-201ENST00000345005 TSPYL6Q8N831 410 aa16.32■□□□□ 0.2
CLK3-201ENST00000345005 KIAA0232Q92628 1395 aa16.32■□□□□ 0.2
CLK3-201ENST00000345005 LMO7Q8WWI1 1683 aa16.32■□□□□ 0.2
CLK3-201ENST00000345005 AMOTQ4VCS5 1084 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
CLK3-201ENST00000345005 ATF7IPQ6VMQ6 1270 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 FTSJ3Q8IY81 847 aaKnown RBP16.31■□□□□ 0.2
CLK3-201ENST00000345005 C8orf58Q8NAV2 365 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 CABLES1Q8TDN4 633 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 NOB1Q9ULX3 412 aaKnown RBP16.31■□□□□ 0.2
CLK3-201ENST00000345005 CPDO75976 1380 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 PIP4K2BP78356 416 aa16.31■□□□□ 0.2
CLK3-201ENST00000345005 ERBB3P21860 1342 aa16.3■□□□□ 0.2
CLK3-201ENST00000345005 TOM1O60784 492 aa16.3■□□□□ 0.2
CLK3-201ENST00000345005 RLBP1P12271 317 aa16.3■□□□□ 0.2
CLK3-201ENST00000345005 BABAM1Q9NWV8 329 aa16.3■□□□□ 0.2
CLK3-201ENST00000345005 ELL2O00472 640 aaPredicted RBP16.29■□□□□ 0.2
CLK3-201ENST00000345005 MRPL50Q8N5N7 158 aaKnown RBP16.29■□□□□ 0.2
CLK3-201ENST00000345005 ARHGAP45Q92619 1136 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 CLUAP1Q96AJ1 413 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 TSPYL4Q9UJ04 414 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 CACNA1FO60840 1977 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 TRIM27P14373 513 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 MVPQ14764 893 aaKnown RBP16.29■□□□□ 0.2
CLK3-201ENST00000345005 CENPQQ7L2Z9 268 aaPredicted RBP16.29■□□□□ 0.2
CLK3-201ENST00000345005 IL17REQ8NFR9 667 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 TNNQ9UQP3 1299 aa16.29■□□□□ 0.2
CLK3-201ENST00000345005 ABCA3Q99758 1704 aa16.28■□□□□ 0.2
CLK3-201ENST00000345005 TAF7Q15545 349 aaPredicted RBP16.27■□□□□ 0.2
CLK3-201ENST00000345005 AKAP4Q5JQC9 854 aa16.27■□□□□ 0.2
CLK3-201ENST00000345005 KDM2BQ8NHM5 1336 aa16.26■□□□□ 0.19
CLK3-201ENST00000345005 HSPA1LP34931 641 aa16.26■□□□□ 0.19
CLK3-201ENST00000345005 ZNF530Q6P9A1 599 aaPredicted RBP16.26■□□□□ 0.19
CLK3-201ENST00000345005 NLRP2Q9NX02 1062 aa16.26■□□□□ 0.19
CLK3-201ENST00000345005 MIS18AQ9NYP9 233 aa16.26■□□□□ 0.19
CLK3-201ENST00000345005 CEMIPQ8WUJ3 1361 aa16.25■□□□□ 0.19
CLK3-201ENST00000345005 CHRNA2Q15822 529 aa16.25■□□□□ 0.19
CLK3-201ENST00000345005 C1orf141Q5JVX7 400 aa16.25■□□□□ 0.19
CLK3-201ENST00000345005 DDX19BQ9UMR2 479 aa16.25■□□□□ 0.19
CLK3-201ENST00000345005 CSB-PGBD3P0DP91 1061 aa16.24■□□□□ 0.19
CLK3-201ENST00000345005 PLEKHG2Q9H7P9 1386 aa16.24■□□□□ 0.19
CLK3-201ENST00000345005 RAPGEF4Q8WZA2 1011 aa16.24■□□□□ 0.19
CLK3-201ENST00000345005 SOS1Q07889 1333 aaPredicted RBP16.24■□□□□ 0.19
CLK3-201ENST00000345005 ROBO1Q9Y6N7 1651 aa16.23■□□□□ 0.19
CLK3-201ENST00000345005 KRT24Q2M2I5 525 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 NPM2Q86SE8 214 aaKnown RBP16.22■□□□□ 0.19
CLK3-201ENST00000345005 ITPRIPQ8IWB1 547 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 UBE2Q2Q8WVN8 375 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 API5Q9BZZ5 524 aaKnown RBP16.22■□□□□ 0.19
CLK3-201ENST00000345005 PRDM11Q9NQV5 511 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 OVOS2A0A0G2JMS6 1433 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 KDM3BQ7LBC6 1761 aa16.22■□□□□ 0.19
CLK3-201ENST00000345005 TATP17735 454 aaPredicted RBP16.22■□□□□ 0.19
CLK3-201ENST00000345005 CHMP4BQ9H444 224 aaKnown RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms