RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 PANK3Q9H999 370 aa10.01□□□□□ -0.81
ATG4A-201ENST00000343524 ZSCAN23Q3MJ62 389 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 TPRNQ4KMQ1 711 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 DNTTIP2Q5QJE6 756 aaKnown RBP10□□□□□ -0.81
ATG4A-201ENST00000343524 TSPYL1Q9H0U9 437 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 KNSTRNQ9Y448 316 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 KIF3AQ9Y496 699 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 CCDC141Q6ZP82 1450 aa10□□□□□ -0.81
ATG4A-201ENST00000343524 PLCB2Q00722 1185 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 CHAF1AQ13111 956 aaPredicted RBP9.99□□□□□ -0.81
ATG4A-201ENST00000343524 KLHL34Q8N239 644 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 ARID3AQ99856 593 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 SPATA31A6Q5VVP1 1343 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 BAG4O95429 457 aaKnown RBP9.99□□□□□ -0.81
ATG4A-201ENST00000343524 PTMAP06454 111 aaKnown RBP9.99□□□□□ -0.81
ATG4A-201ENST00000343524 FAM193AP78312 1265 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 CDCA8Q53HL2 280 aa9.99□□□□□ -0.81
ATG4A-201ENST00000343524 DNAJC2Q99543 621 aaKnown RBP9.99□□□□□ -0.81
ATG4A-201ENST00000343524 CBX1P83916 185 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 MEX3CQ5U5Q3 659 aaKnown RBP9.98□□□□□ -0.81
ATG4A-201ENST00000343524 PDCL2Q8N4E4 241 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 PANK1Q8TE04 598 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 OCEL1Q9H607 264 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 DIAPH3Q9NSV4 1193 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 ZC3H13Q5T200 1668 aaKnown RBP9.98□□□□□ -0.81
ATG4A-201ENST00000343524 PHLPP1O60346 1717 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 CDC42BPBQ9Y5S2 1711 aa9.98□□□□□ -0.81
ATG4A-201ENST00000343524 GGT6Q6P531 493 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 LRSAM1Q6UWE0 723 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 CREBRFQ8IUR6 639 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 SLAIN1Q8ND83 568 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 UGGT1Q9NYU2 1555 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 HDAC1Q13547 482 aaPredicted RBP9.97□□□□□ -0.81
ATG4A-201ENST00000343524 FTSJ3Q8IY81 847 aaKnown RBP9.97□□□□□ -0.81
ATG4A-201ENST00000343524 PIBF1Q8WXW3 757 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 SAMD9LQ8IVG5 1584 aa9.97□□□□□ -0.81
ATG4A-201ENST00000343524 LRP5O75197 1615 aa9.96□□□□□ -0.81
ATG4A-201ENST00000343524 RGS12O14924 1447 aa9.96□□□□□ -0.81
ATG4A-201ENST00000343524 MBD3O95983 291 aa9.96□□□□□ -0.81
ATG4A-201ENST00000343524 FBXO31Q5XUX0 539 aaPredicted RBP9.96□□□□□ -0.81
ATG4A-201ENST00000343524 CAVIN1Q6NZI2 390 aaKnown RBP9.96□□□□□ -0.81
ATG4A-201ENST00000343524 ZNF771Q7L3S4 317 aaPredicted RBP9.96□□□□□ -0.81
ATG4A-201ENST00000343524 RBSNQ9H1K0 784 aa9.96□□□□□ -0.81
ATG4A-201ENST00000343524 ATP7AQ04656 1500 aa9.96□□□□□ -0.82
ATG4A-201ENST00000343524 A2MP01023 1474 aa9.96□□□□□ -0.82
ATG4A-201ENST00000343524 NUP155O75694 1391 aa9.96□□□□□ -0.82
ATG4A-201ENST00000343524 KANK1Q14678 1352 aa9.96□□□□□ -0.82
ATG4A-201ENST00000343524 PHF14O94880 888 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 CHRM1P11229 460 aaPredicted RBP9.95□□□□□ -0.82
ATG4A-201ENST00000343524 SYAP1Q96A49 352 aaPredicted RBP9.95□□□□□ -0.82
ATG4A-201ENST00000343524 TESK2Q96S53 571 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 OGFRQ9NZT2 677 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 PCDHB15Q9Y5E8 787 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 MVPQ14764 893 aaKnown RBP9.95□□□□□ -0.82
ATG4A-201ENST00000343524 SYCP1Q15431 976 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 FAM184AQ8NB25 1140 aa9.95□□□□□ -0.82
ATG4A-201ENST00000343524 CWC22Q9HCG8 908 aaKnown RBP9.95□□□□□ -0.82
ATG4A-201ENST00000343524 COL16A1Q07092 1604 aaPredicted RBP9.95□□□□□ -0.82
ATG4A-201ENST00000343524 ATAD2Q6PL18 1390 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 CT47B1P0C2W7 299 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 SSFA2P28290 1259 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 RARSP54136 660 aaKnown RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 ZNF467Q7Z7K2 595 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 ZNF710Q8N1W2 664 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 CGNQ9P2M7 1197 aaKnown RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 KDM2AQ9Y2K7 1162 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 SCAF11Q99590 1463 aaKnown RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 TROQ12816 1431 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 NUTM2BA6NNL0 878 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 NUTM2EB1AL46 878 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 APAF1O14727 1248 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 TPM3P06753 285 aa9.94□□□□□ -0.82
ATG4A-201ENST00000343524 NUTM2DQ5VT03 806 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 NUTM2AQ8IVF1 878 aaPredicted RBP9.94□□□□□ -0.82
ATG4A-201ENST00000343524 SPAG9O60271 1321 aaKnown RBP9.93□□□□□ -0.82
ATG4A-201ENST00000343524 FKBP5Q13451 457 aaPredicted RBP9.93□□□□□ -0.82
ATG4A-201ENST00000343524 UVSSAQ2YD98 709 aa9.93□□□□□ -0.82
ATG4A-201ENST00000343524 MCTP1Q6DN14 999 aa9.93□□□□□ -0.82
ATG4A-201ENST00000343524 PREX2Q70Z35 1606 aa9.93□□□□□ -0.82
ATG4A-201ENST00000343524 MYOM1P52179 1685 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 PRIM1P49642 420 aaKnown RBP9.92□□□□□ -0.82
ATG4A-201ENST00000343524 ATP2B3Q16720 1220 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 BMP2KLQ5H9B9 411 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 ANKRD7Q92527 254 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 LMBRD1Q9NUN5 540 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 SPTLC3Q9NUV7 552 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 CALCOCO1Q9P1Z2 691 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.92□□□□□ -0.82
ATG4A-201ENST00000343524 TMEM94Q12767 1356 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 KDM5AP29375 1690 aaKnown RBP9.92□□□□□ -0.82
ATG4A-201ENST00000343524 RBM6P78332 1123 aaKnown RBP9.92□□□□□ -0.82
ATG4A-201ENST00000343524 NOLC1Q14978 699 aaKnown RBP eCLIP9.92□□□□□ -0.82
ATG4A-201ENST00000343524 RABEP1Q15276 862 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 WDR63Q8IWG1 891 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 TIGD1Q96MW7 591 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 BCL2L12Q9HB09 334 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 DDX19BQ9UMR2 479 aa9.92□□□□□ -0.82
ATG4A-201ENST00000343524 ZKSCAN2Q63HK3 967 aa9.91□□□□□ -0.82
ATG4A-201ENST00000343524 TSPY26PQ9H489 355 aa9.91□□□□□ -0.82
ATG4A-201ENST00000343524 SHPRHQ149N8 1683 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms