RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 ARHGEF40Q8TER5 1519 aa11.81□□□□□ -0.52
HOXA1-201ENST00000343060 CUL4AQ13619 759 aa11.81□□□□□ -0.52
HOXA1-201ENST00000343060 TSPY26PQ9H489 355 aa11.81□□□□□ -0.52
HOXA1-201ENST00000343060 IL17RAQ96F46 866 aa11.81□□□□□ -0.52
HOXA1-201ENST00000343060 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.81□□□□□ -0.52
HOXA1-201ENST00000343060 MCM2P49736 904 aa11.8□□□□□ -0.52
HOXA1-201ENST00000343060 TWISTNBQ3B726 338 aaPredicted RBP11.8□□□□□ -0.52
HOXA1-201ENST00000343060 RPAP2Q8IXW5 612 aaPredicted RBP11.8□□□□□ -0.52
HOXA1-201ENST00000343060 CDK12Q9NYV4 1490 aaPredicted RBP11.8□□□□□ -0.52
HOXA1-201ENST00000343060 MLH3Q9UHC1 1453 aa11.8□□□□□ -0.52
HOXA1-201ENST00000343060 HMGN5P82970 282 aaKnown RBP11.8□□□□□ -0.52
HOXA1-201ENST00000343060 DMTNQ08495 405 aa11.8□□□□□ -0.52
HOXA1-201ENST00000343060 UVSSAQ2YD98 709 aa11.8□□□□□ -0.52
HOXA1-201ENST00000343060 SYAP1Q96A49 352 aaPredicted RBP11.8□□□□□ -0.52
HOXA1-201ENST00000343060 YTHDC2Q9H6S0 1430 aaKnown RBP11.79□□□□□ -0.52
HOXA1-201ENST00000343060 RIMS2Q9UQ26 1411 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 ERC2O15083 957 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 C16orf71Q8IYS4 520 aaPredicted RBP11.79□□□□□ -0.52
HOXA1-201ENST00000343060 OTUD7AQ8TE49 926 aaPredicted RBP11.79□□□□□ -0.52
HOXA1-201ENST00000343060 PIBF1Q8WXW3 757 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 INTS4Q96HW7 963 aaKnown RBP11.79□□□□□ -0.52
HOXA1-201ENST00000343060 ATP7BP35670 1465 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 SRPK2P78362 688 aaKnown RBP11.79□□□□□ -0.52
HOXA1-201ENST00000343060 CEP85Q6P2H3 762 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 FAM184AQ8NB25 1140 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 PHACTR3Q96KR7 559 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 OSBPL3Q9H4L5 887 aa11.79□□□□□ -0.52
HOXA1-201ENST00000343060 RTL1A6NKG5 1358 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 KLHL34Q8N239 644 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 TMX3Q96JJ7 454 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 THUMPD2Q9BTF0 503 aaKnown RBP11.78□□□□□ -0.52
HOXA1-201ENST00000343060 MAP2P11137 1827 aaKnown RBP11.78□□□□□ -0.52
HOXA1-201ENST00000343060 PHF14O94880 888 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 LMOD3Q0VAK6 560 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 ZNF710Q8N1W2 664 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 C8orf58Q8NAV2 365 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 CHAMP1Q96JM3 812 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 SPTLC3Q9NUV7 552 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 POLKQ9UBT6 870 aa11.78□□□□□ -0.52
HOXA1-201ENST00000343060 ZSCAN20P17040 1043 aaPredicted RBP11.77□□□□□ -0.53
HOXA1-201ENST00000343060 HDGFL2Q7Z4V5 671 aaPredicted RBP11.77□□□□□ -0.53
HOXA1-201ENST00000343060 RNF214Q8ND24 703 aa11.77□□□□□ -0.53
HOXA1-201ENST00000343060 POGZQ7Z3K3 1410 aa11.77□□□□□ -0.53
HOXA1-201ENST00000343060 TMEM87AQ8NBN3 555 aa11.77□□□□□ -0.53
HOXA1-201ENST00000343060 SSH2Q76I76 1423 aa11.76□□□□□ -0.53
HOXA1-201ENST00000343060 PTMAP06454 111 aaKnown RBP11.76□□□□□ -0.53
HOXA1-201ENST00000343060 ANAPC15P60006 121 aa11.76□□□□□ -0.53
HOXA1-201ENST00000343060 MSH6P52701 1360 aa11.75□□□□□ -0.53
HOXA1-201ENST00000343060 IL13P35225 146 aa11.75□□□□□ -0.53
HOXA1-201ENST00000343060 FKBP5Q13451 457 aaPredicted RBP11.75□□□□□ -0.53
HOXA1-201ENST00000343060 NRKQ7Z2Y5 1582 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 AATKQ6ZMQ8 1374 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 KIAA0232Q92628 1395 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 MYO5BQ9ULV0 1848 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 SAFB2Q14151 953 aaKnown RBP eCLIP11.74□□□□□ -0.53
HOXA1-201ENST00000343060 NOLC1Q14978 699 aaKnown RBP eCLIP11.74□□□□□ -0.53
HOXA1-201ENST00000343060 SALL3Q9BXA9 1300 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 TMEM131LA2VDJ0 1609 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 ELL2O00472 640 aaPredicted RBP11.74□□□□□ -0.53
HOXA1-201ENST00000343060 NEK4P51957 841 aa11.74□□□□□ -0.53
HOXA1-201ENST00000343060 GTPBP4Q9BZE4 634 aaKnown RBP11.74□□□□□ -0.53
HOXA1-201ENST00000343060 DLC1Q96QB1 1528 aa11.73□□□□□ -0.53
HOXA1-201ENST00000343060 PTPRCP08575 1304 aa11.73□□□□□ -0.53
HOXA1-201ENST00000343060 RPAP1Q9BWH6 1393 aaPredicted RBP11.73□□□□□ -0.53
HOXA1-201ENST00000343060 SMARCA5O60264 1052 aaPredicted RBP11.73□□□□□ -0.53
HOXA1-201ENST00000343060 HMOX1P09601 288 aa11.73□□□□□ -0.53
HOXA1-201ENST00000343060 HAP1P54257 671 aaPredicted RBP11.73□□□□□ -0.53
HOXA1-201ENST00000343060 EPB41L2O43491 1005 aaKnown RBP11.72□□□□□ -0.53
HOXA1-201ENST00000343060 PDE1AP54750 535 aa11.72□□□□□ -0.53
HOXA1-201ENST00000343060 PRAM1Q96QH2 718 aa11.72□□□□□ -0.53
HOXA1-201ENST00000343060 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
HOXA1-201ENST00000343060 MINK1Q8N4C8 1332 aaPredicted RBP11.72□□□□□ -0.53
HOXA1-201ENST00000343060 PLEKHG5O94827 1062 aa11.71□□□□□ -0.53
HOXA1-201ENST00000343060 CCDC183Q5T5S1 534 aa11.71□□□□□ -0.53
HOXA1-201ENST00000343060 PRDM10Q9NQV6 1147 aa11.71□□□□□ -0.53
HOXA1-201ENST00000343060 WDR33Q9C0J8 1336 aaKnown RBP11.71□□□□□ -0.53
HOXA1-201ENST00000343060 LETM1O95202 739 aaPredicted RBP11.71□□□□□ -0.53
HOXA1-201ENST00000343060 MCCP23508 829 aa11.71□□□□□ -0.53
HOXA1-201ENST00000343060 PODXL2Q9NZ53 605 aa11.71□□□□□ -0.53
HOXA1-201ENST00000343060 ALKQ9UM73 1620 aa11.71□□□□□ -0.54
HOXA1-201ENST00000343060 EDC4Q6P2E9 1401 aaKnown RBP11.71□□□□□ -0.54
HOXA1-201ENST00000343060 GADD45BO75293 160 aaPredicted RBP11.7□□□□□ -0.54
HOXA1-201ENST00000343060 NUTM2DQ5VT03 806 aaPredicted RBP11.7□□□□□ -0.54
HOXA1-201ENST00000343060 FOXD4L5Q5VV16 416 aaPredicted RBP11.7□□□□□ -0.54
HOXA1-201ENST00000343060 FOXD4L4Q8WXT5 416 aaPredicted RBP11.7□□□□□ -0.54
HOXA1-201ENST00000343060 KIF3AQ9Y496 699 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 HMMRO75330 724 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 KIF20AO95235 890 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 ADCY5O95622 1261 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 USP48Q86UV5 1035 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 MEIS3Q99687 375 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 CDK19Q9BWU1 502 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 CABP1Q9NZU7 370 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 USP25Q9UHP3 1055 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 TCHHQ07283 1943 aa11.7□□□□□ -0.54
HOXA1-201ENST00000343060 DNTTIP2Q5QJE6 756 aaKnown RBP11.69□□□□□ -0.54
HOXA1-201ENST00000343060 ARID3AQ99856 593 aa11.69□□□□□ -0.54
HOXA1-201ENST00000343060 STK26Q9P289 416 aa11.69□□□□□ -0.54
HOXA1-201ENST00000343060 PALD1Q9ULE6 856 aa11.69□□□□□ -0.54
HOXA1-201ENST00000343060 GGT6Q6P531 493 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms