RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 AHDC1Q5TGY3 1603 aaPredicted RBP19.98■□□□□ 0.79
LIMS1-202ENST00000338045 ROBO1Q9Y6N7 1651 aa19.98■□□□□ 0.79
LIMS1-202ENST00000338045 ABCA3Q99758 1704 aa19.98■□□□□ 0.79
LIMS1-202ENST00000338045 CHL1O00533 1208 aa19.97■□□□□ 0.79
LIMS1-202ENST00000338045 RTF1Q92541 710 aaKnown RBP19.97■□□□□ 0.79
LIMS1-202ENST00000338045 ZNF428Q96B54 188 aa19.97■□□□□ 0.79
LIMS1-202ENST00000338045 LRRC37A3O60309 1634 aa19.97■□□□□ 0.79
LIMS1-202ENST00000338045 GNAT3A8MTJ3 354 aa19.96■□□□□ 0.79
LIMS1-202ENST00000338045 CRBNQ96SW2 442 aa19.96■□□□□ 0.79
LIMS1-202ENST00000338045 MAP3K5Q99683 1374 aa19.96■□□□□ 0.79
LIMS1-202ENST00000338045 PDE3AQ14432 1141 aa19.96■□□□□ 0.79
LIMS1-202ENST00000338045 FAM208AQ9UK61 1670 aaKnown RBP19.95■□□□□ 0.78
LIMS1-202ENST00000338045 B4GALNT3Q6L9W6 998 aa19.95■□□□□ 0.78
LIMS1-202ENST00000338045 CHRNA2Q15822 529 aa19.94■□□□□ 0.78
LIMS1-202ENST00000338045 ALDH1L2Q3SY69 923 aa19.93■□□□□ 0.78
LIMS1-202ENST00000338045 AMOTQ4VCS5 1084 aa19.93■□□□□ 0.78
LIMS1-202ENST00000338045 SSH1Q8WYL5 1049 aa19.93■□□□□ 0.78
LIMS1-202ENST00000338045 PLEKHG2Q9H7P9 1386 aa19.93■□□□□ 0.78
LIMS1-202ENST00000338045 VAMP4O75379 141 aa19.92■□□□□ 0.78
LIMS1-202ENST00000338045 BCL2L13Q9BXK5 485 aa19.92■□□□□ 0.78
LIMS1-202ENST00000338045 PLEKHO1Q53GL0 409 aaPredicted RBP19.92■□□□□ 0.78
LIMS1-202ENST00000338045 BRPF1P55201 1214 aaPredicted RBP19.91■□□□□ 0.78
LIMS1-202ENST00000338045 TSPYL6Q8N831 410 aa19.91■□□□□ 0.78
LIMS1-202ENST00000338045 IL17REQ8NFR9 667 aa19.91■□□□□ 0.78
LIMS1-202ENST00000338045 PRDM11Q9NQV5 511 aa19.91■□□□□ 0.78
LIMS1-202ENST00000338045 SMC4Q9NTJ3 1288 aa19.91■□□□□ 0.78
LIMS1-202ENST00000338045 CEMIPQ8WUJ3 1361 aa19.91■□□□□ 0.78
LIMS1-202ENST00000338045 CCDC136Q96JN2 1154 aa19.9■□□□□ 0.78
LIMS1-202ENST00000338045 C8orf58Q8NAV2 365 aa19.9■□□□□ 0.78
LIMS1-202ENST00000338045 FRAT1Q92837 279 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-202ENST00000338045 NLRP2Q9NX02 1062 aa19.9■□□□□ 0.78
LIMS1-202ENST00000338045 CANXP27824 592 aaKnown RBP19.89■□□□□ 0.77
LIMS1-202ENST00000338045 TWISTNBQ3B726 338 aaPredicted RBP19.89■□□□□ 0.77
LIMS1-202ENST00000338045 AKAP4Q5JQC9 854 aa19.89■□□□□ 0.77
LIMS1-202ENST00000338045 HAP1P54257 671 aaPredicted RBP19.88■□□□□ 0.77
LIMS1-202ENST00000338045 BABAM1Q9NWV8 329 aa19.88■□□□□ 0.77
LIMS1-202ENST00000338045 COL22A1Q8NFW1 1626 aaPredicted RBP19.88■□□□□ 0.77
LIMS1-202ENST00000338045 CSB-PGBD3P0DP91 1061 aa19.87■□□□□ 0.77
LIMS1-202ENST00000338045 ZKSCAN2Q63HK3 967 aa19.87■□□□□ 0.77
LIMS1-202ENST00000338045 ZNF530Q6P9A1 599 aaPredicted RBP19.87■□□□□ 0.77
LIMS1-202ENST00000338045 COL5A2P05997 1499 aaPredicted RBP19.87■□□□□ 0.77
LIMS1-202ENST00000338045 KIF16BQ96L93 1317 aa19.87■□□□□ 0.77
LIMS1-202ENST00000338045 WDR17Q8IZU2 1322 aa19.86■□□□□ 0.77
LIMS1-202ENST00000338045 OVOS2A0A0G2JMS6 1433 aa19.86■□□□□ 0.77
LIMS1-202ENST00000338045 RAPGEF4Q8WZA2 1011 aa19.86■□□□□ 0.77
LIMS1-202ENST00000338045 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.86■□□□□ 0.77
LIMS1-202ENST00000338045 TSPYL4Q9UJ04 414 aa19.86■□□□□ 0.77
LIMS1-202ENST00000338045 TOM1O60784 492 aa19.85■□□□□ 0.77
LIMS1-202ENST00000338045 PANK1Q8TE04 598 aa19.85■□□□□ 0.77
LIMS1-202ENST00000338045 MEGF6O75095 1541 aa19.85■□□□□ 0.77
LIMS1-202ENST00000338045 TAF7Q15545 349 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-202ENST00000338045 COL16A1Q07092 1604 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-202ENST00000338045 ELL2O00472 640 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-202ENST00000338045 MS4A1P11836 297 aa19.84■□□□□ 0.77
LIMS1-202ENST00000338045 RLBP1P12271 317 aa19.84■□□□□ 0.77
LIMS1-202ENST00000338045 C1orf141Q5JVX7 400 aa19.84■□□□□ 0.77
LIMS1-202ENST00000338045 ADAMTS7Q9UKP4 1686 aa19.83■□□□□ 0.76
LIMS1-202ENST00000338045 TATP17735 454 aaPredicted RBP19.83■□□□□ 0.76
LIMS1-202ENST00000338045 ATF7IPQ6VMQ6 1270 aa19.83■□□□□ 0.76
LIMS1-202ENST00000338045 MRPL50Q8N5N7 158 aaKnown RBP19.83■□□□□ 0.76
LIMS1-202ENST00000338045 MIS18AQ9NYP9 233 aa19.83■□□□□ 0.76
LIMS1-202ENST00000338045 NOB1Q9ULX3 412 aaKnown RBP19.83■□□□□ 0.76
LIMS1-202ENST00000338045 TNNQ9UQP3 1299 aa19.83■□□□□ 0.76
LIMS1-202ENST00000338045 TRIM27P14373 513 aa19.82■□□□□ 0.76
LIMS1-202ENST00000338045 KRT24Q2M2I5 525 aa19.82■□□□□ 0.76
LIMS1-202ENST00000338045 LGR6Q9HBX8 967 aa19.82■□□□□ 0.76
LIMS1-202ENST00000338045 IPO8O15397 1037 aaKnown RBP19.82■□□□□ 0.76
LIMS1-202ENST00000338045 COG6Q9Y2V7 657 aa19.82■□□□□ 0.76
LIMS1-202ENST00000338045 PHLPP1O60346 1717 aa19.81■□□□□ 0.76
LIMS1-202ENST00000338045 DZIP1LQ8IYY4 767 aaKnown RBP19.81■□□□□ 0.76
LIMS1-202ENST00000338045 PKD1L3Q7Z443 1732 aa19.81■□□□□ 0.76
LIMS1-202ENST00000338045 RNMTO43148 476 aaKnown RBP19.8■□□□□ 0.76
LIMS1-202ENST00000338045 AAMPQ13685 434 aa19.8■□□□□ 0.76
LIMS1-202ENST00000338045 ARHGAP45Q92619 1136 aa19.8■□□□□ 0.76
LIMS1-202ENST00000338045 SPG7Q9UQ90 795 aa19.8■□□□□ 0.76
LIMS1-202ENST00000338045 SOS1Q07889 1333 aaPredicted RBP19.79■□□□□ 0.76
LIMS1-202ENST00000338045 MPRIPQ6WCQ1 1025 aa19.79■□□□□ 0.76
LIMS1-202ENST00000338045 CLUAP1Q96AJ1 413 aa19.79■□□□□ 0.76
LIMS1-202ENST00000338045 CARD10Q9BWT7 1032 aa19.79■□□□□ 0.76
LIMS1-202ENST00000338045 TOM1L2Q6ZVM7 507 aa19.78■□□□□ 0.76
LIMS1-202ENST00000338045 COL14A1Q05707 1796 aaKnown RBP19.78■□□□□ 0.76
LIMS1-202ENST00000338045 MVPQ14764 893 aaKnown RBP19.77■□□□□ 0.76
LIMS1-202ENST00000338045 FTSJ3Q8IY81 847 aaKnown RBP19.77■□□□□ 0.76
LIMS1-202ENST00000338045 VIRMAQ69YN4 1812 aaKnown RBP19.77■□□□□ 0.76
LIMS1-202ENST00000338045 PHKG2P15735 406 aa19.77■□□□□ 0.76
LIMS1-202ENST00000338045 KDM3BQ7LBC6 1761 aa19.77■□□□□ 0.76
LIMS1-202ENST00000338045 PARP4Q9UKK3 1724 aaKnown RBP19.76■□□□□ 0.75
LIMS1-202ENST00000338045 TEFQ10587 303 aa19.76■□□□□ 0.75
LIMS1-202ENST00000338045 LARP1Q6PKG0 1096 aaKnown RBP19.75■□□□□ 0.75
LIMS1-202ENST00000338045 SIPA1L3O60292 1781 aaPredicted RBP19.75■□□□□ 0.75
LIMS1-202ENST00000338045 IFNL2Q8IZJ0 200 aa19.75■□□□□ 0.75
LIMS1-202ENST00000338045 KDM6AO15550 1401 aaPredicted RBP19.74■□□□□ 0.75
LIMS1-202ENST00000338045 TCERG1O14776 1098 aaKnown RBP19.74■□□□□ 0.75
LIMS1-202ENST00000338045 EVA1CP58658 441 aa19.74■□□□□ 0.75
LIMS1-202ENST00000338045 PIP4K2BP78356 416 aa19.74■□□□□ 0.75
LIMS1-202ENST00000338045 AEBP2Q6ZN18 517 aaPredicted RBP19.74■□□□□ 0.75
LIMS1-202ENST00000338045 KDM2BQ8NHM5 1336 aa19.73■□□□□ 0.75
LIMS1-202ENST00000338045 UBAP1LF5GYI3 381 aa19.73■□□□□ 0.75
LIMS1-202ENST00000338045 CYP27B1O15528 508 aa19.73■□□□□ 0.75
LIMS1-202ENST00000338045 STRN4Q9NRL3 753 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms