RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 MEGF6O75095 1541 aa18.92■□□□□ 0.62
LIMS1-201ENST00000332345 EN1Q05925 392 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-201ENST00000332345 SBF2Q86WG5 1849 aa18.92■□□□□ 0.62
LIMS1-201ENST00000332345 IL13P35225 146 aa18.91■□□□□ 0.62
LIMS1-201ENST00000332345 SPG7Q9UQ90 795 aa18.91■□□□□ 0.62
LIMS1-201ENST00000332345 IGSF1Q8N6C5 1336 aa18.91■□□□□ 0.62
LIMS1-201ENST00000332345 NCAPD2Q15021 1401 aa18.91■□□□□ 0.62
LIMS1-201ENST00000332345 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.9■□□□□ 0.62
LIMS1-201ENST00000332345 DIAPH1O60610 1272 aaKnown RBP18.89■□□□□ 0.61
LIMS1-201ENST00000332345 ACSBG1Q96GR2 724 aa18.89■□□□□ 0.61
LIMS1-201ENST00000332345 PLSCR1O15162 318 aa18.88■□□□□ 0.61
LIMS1-201ENST00000332345 CFAP53Q96M91 514 aa18.88■□□□□ 0.61
LIMS1-201ENST00000332345 CAMKK2Q96RR4 588 aa18.88■□□□□ 0.61
LIMS1-201ENST00000332345 PCDH11XQ9BZA7 1347 aa18.88■□□□□ 0.61
LIMS1-201ENST00000332345 PCDH11YQ9BZA8 1340 aa18.88■□□□□ 0.61
LIMS1-201ENST00000332345 TNS1Q9HBL0 1735 aaKnown RBP18.88■□□□□ 0.61
LIMS1-201ENST00000332345 KCNQ2O43526 872 aa18.87■□□□□ 0.61
LIMS1-201ENST00000332345 EZH2Q15910 746 aaKnown RBP18.87■□□□□ 0.61
LIMS1-201ENST00000332345 SULT6B1Q6IMI4 303 aa18.87■□□□□ 0.61
LIMS1-201ENST00000332345 PARD3Q8TEW0 1356 aa18.86■□□□□ 0.61
LIMS1-201ENST00000332345 PPP2R1AP30153 589 aa18.86■□□□□ 0.61
LIMS1-201ENST00000332345 PLEKHG2Q9H7P9 1386 aa18.85■□□□□ 0.61
LIMS1-201ENST00000332345 PLEKHO1Q53GL0 409 aaPredicted RBP18.85■□□□□ 0.61
LIMS1-201ENST00000332345 PTF1AQ7RTS3 328 aa18.85■□□□□ 0.61
LIMS1-201ENST00000332345 CYP27B1O15528 508 aa18.84■□□□□ 0.61
LIMS1-201ENST00000332345 AMOTQ4VCS5 1084 aa18.84■□□□□ 0.61
LIMS1-201ENST00000332345 ZNF316A6NFI3 1004 aaPredicted RBP18.83■□□□□ 0.6
LIMS1-201ENST00000332345 PRIM1P49642 420 aaKnown RBP18.83■□□□□ 0.6
LIMS1-201ENST00000332345 RALBP1Q15311 655 aa18.83■□□□□ 0.6
LIMS1-201ENST00000332345 IFNL2Q8IZJ0 200 aa18.83■□□□□ 0.6
LIMS1-201ENST00000332345 SYTL4Q96C24 671 aaPredicted RBP18.83■□□□□ 0.6
LIMS1-201ENST00000332345 SHANK3Q9BYB0 1731 aa18.83■□□□□ 0.6
LIMS1-201ENST00000332345 AEBP1Q8IUX7 1158 aa18.82■□□□□ 0.6
LIMS1-201ENST00000332345 NUDCQ9Y266 331 aa18.82■□□□□ 0.6
LIMS1-201ENST00000332345 PKD1L3Q7Z443 1732 aa18.81■□□□□ 0.6
LIMS1-201ENST00000332345 U2SURPO15042 1029 aaKnown RBP18.81■□□□□ 0.6
LIMS1-201ENST00000332345 NKX1-1Q15270 411 aaPredicted RBP18.81■□□□□ 0.6
LIMS1-201ENST00000332345 KDRP35968 1356 aa18.81■□□□□ 0.6
LIMS1-201ENST00000332345 NHSQ6T4R5 1651 aa18.8■□□□□ 0.6
LIMS1-201ENST00000332345 HMOX1P09601 288 aa18.8■□□□□ 0.6
LIMS1-201ENST00000332345 MSH5O43196 834 aa18.79■□□□□ 0.6
LIMS1-201ENST00000332345 HSP90AB1P08238 724 aaKnown RBP18.79■□□□□ 0.6
LIMS1-201ENST00000332345 PHKG2P15735 406 aa18.79■□□□□ 0.6
LIMS1-201ENST00000332345 NBPF14Q5TI25 921 aa18.79■□□□□ 0.6
LIMS1-201ENST00000332345 C1orf141Q5JVX7 400 aa18.77■□□□□ 0.6
LIMS1-201ENST00000332345 ZNF530Q6P9A1 599 aaPredicted RBP18.77■□□□□ 0.6
LIMS1-201ENST00000332345 BTAF1O14981 1849 aa18.77■□□□□ 0.59
LIMS1-201ENST00000332345 RGPD3A6NKT7 1758 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-201ENST00000332345 RGPD4Q7Z3J3 1758 aa18.76■□□□□ 0.59
LIMS1-201ENST00000332345 TXNRD1Q16881 649 aa18.76■□□□□ 0.59
LIMS1-201ENST00000332345 MPRIPQ6WCQ1 1025 aa18.76■□□□□ 0.59
LIMS1-201ENST00000332345 PROM2Q8N271 834 aa18.76■□□□□ 0.59
LIMS1-201ENST00000332345 COL3A1P02461 1466 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-201ENST00000332345 DOT1LQ8TEK3 1739 aa18.75■□□□□ 0.59
LIMS1-201ENST00000332345 DCAF5Q96JK2 942 aa18.75■□□□□ 0.59
LIMS1-201ENST00000332345 ERVV-2B6SEH9 535 aa18.73■□□□□ 0.59
LIMS1-201ENST00000332345 U2AF1L5P0DN76 240 aaPredicted RBP18.73■□□□□ 0.59
LIMS1-201ENST00000332345 U2AF1Q01081 240 aaKnown RBP eCLIP18.73■□□□□ 0.59
LIMS1-201ENST00000332345 RREB1Q92766 1687 aa18.73■□□□□ 0.59
LIMS1-201ENST00000332345 AKAP4Q5JQC9 854 aa18.72■□□□□ 0.59
LIMS1-201ENST00000332345 SLC27A3Q5K4L6 730 aa18.72■□□□□ 0.59
LIMS1-201ENST00000332345 TMOD3Q9NYL9 352 aa18.72■□□□□ 0.59
LIMS1-201ENST00000332345 MYBBP1AQ9BQG0 1328 aaKnown RBP18.72■□□□□ 0.59
LIMS1-201ENST00000332345 FCHSD2O94868 740 aa18.71■□□□□ 0.59
LIMS1-201ENST00000332345 HMGB2P26583 209 aaKnown RBP18.71■□□□□ 0.59
LIMS1-201ENST00000332345 R3HDM1Q15032 1099 aaKnown RBP18.71■□□□□ 0.59
LIMS1-201ENST00000332345 PIGBQ92521 554 aa18.71■□□□□ 0.59
LIMS1-201ENST00000332345 SMARCC1Q92922 1105 aaPredicted RBP18.71■□□□□ 0.59
LIMS1-201ENST00000332345 ITGB4P16144 1822 aa18.71■□□□□ 0.59
LIMS1-201ENST00000332345 NUP188Q5SRE5 1749 aa18.69■□□□□ 0.58
LIMS1-201ENST00000332345 PSDA5PKW4 1024 aaPredicted RBP18.69■□□□□ 0.58
LIMS1-201ENST00000332345 MTHFSDQ2M296 383 aaKnown RBP18.69■□□□□ 0.58
LIMS1-201ENST00000332345 PRKRIP1Q9H875 184 aaPredicted RBP18.69■□□□□ 0.58
LIMS1-201ENST00000332345 PRKAR2BP31323 418 aa18.68■□□□□ 0.58
LIMS1-201ENST00000332345 CABP4P57796 275 aa18.68■□□□□ 0.58
LIMS1-201ENST00000332345 GAS2L2Q8NHY3 880 aa18.68■□□□□ 0.58
LIMS1-201ENST00000332345 RSPH6AQ9H0K4 717 aa18.68■□□□□ 0.58
LIMS1-201ENST00000332345 PNNQ9H307 717 aaKnown RBP18.68■□□□□ 0.58
LIMS1-201ENST00000332345 STK32BQ9NY57 414 aa18.68■□□□□ 0.58
LIMS1-201ENST00000332345 TOGARAM1Q9Y4F4 1720 aa18.66■□□□□ 0.58
LIMS1-201ENST00000332345 NEFMP07197 916 aa18.66■□□□□ 0.58
LIMS1-201ENST00000332345 LRRC4BQ9NT99 713 aa18.66■□□□□ 0.58
LIMS1-201ENST00000332345 CCNL1Q9UK58 526 aaPredicted RBP18.66■□□□□ 0.58
LIMS1-201ENST00000332345 PHACTR3Q96KR7 559 aa18.65■□□□□ 0.58
LIMS1-201ENST00000332345 GNAT3A8MTJ3 354 aa18.64■□□□□ 0.57
LIMS1-201ENST00000332345 SLC15A2Q16348 729 aa18.64■□□□□ 0.57
LIMS1-201ENST00000332345 NFATC2IPQ8NCF5 419 aa18.64■□□□□ 0.57
LIMS1-201ENST00000332345 ASAP1Q9ULH1 1129 aa18.64■□□□□ 0.57
LIMS1-201ENST00000332345 PALLDQ8WX93 1383 aa18.64■□□□□ 0.57
LIMS1-201ENST00000332345 LY75O60449 1722 aa18.63■□□□□ 0.57
LIMS1-201ENST00000332345 RNMTO43148 476 aaKnown RBP18.63■□□□□ 0.57
LIMS1-201ENST00000332345 LGR6Q9HBX8 967 aa18.63■□□□□ 0.57
LIMS1-201ENST00000332345 ANO8Q9HCE9 1232 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-201ENST00000332345 KDM6AO15550 1401 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-201ENST00000332345 KCNQ4P56696 695 aa18.62■□□□□ 0.57
LIMS1-201ENST00000332345 ATG3Q9NT62 314 aa18.62■□□□□ 0.57
LIMS1-201ENST00000332345 SCN11AQ9UI33 1791 aa18.61■□□□□ 0.57
LIMS1-201ENST00000332345 SLC52A2Q9HAB3 445 aa18.61■□□□□ 0.57
LIMS1-201ENST00000332345 MAP3K5Q99683 1374 aa18.6■□□□□ 0.57
LIMS1-201ENST00000332345 LOC102724428A0A0B4J2F2 783 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms