RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 PPLO60437 1756 aa29.54■■■□□ 2.32
SOX1-201ENST00000330949 VGFO15240 615 aaPredicted RBP29.53■■■□□ 2.32
SOX1-201ENST00000330949 ABCC3O15438 1527 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 SIGLEC1Q9BZZ2 1709 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 PTCH1Q13635 1447 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 SPDYE4A6NLX3 237 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 FEZ1Q99689 392 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 TTC12Q9H892 705 aaPredicted RBP29.53■■■□□ 2.32
SOX1-201ENST00000330949 MLH3Q9UHC1 1453 aa29.53■■■□□ 2.32
SOX1-201ENST00000330949 ZC3H13Q5T200 1668 aaKnown RBP29.52■■■□□ 2.32
SOX1-201ENST00000330949 BRD1O95696 1058 aa29.52■■■□□ 2.32
SOX1-201ENST00000330949 REC8O95072 547 aa29.52■■■□□ 2.32
SOX1-201ENST00000330949 ANKRD7Q92527 254 aa29.51■■■□□ 2.31
SOX1-201ENST00000330949 FAM177BA6PVY3 158 aa29.51■■■□□ 2.31
SOX1-201ENST00000330949 FOXD4L5Q5VV16 416 aaPredicted RBP29.51■■■□□ 2.31
SOX1-201ENST00000330949 FOXD4L4Q8WXT5 416 aaPredicted RBP29.51■■■□□ 2.31
SOX1-201ENST00000330949 USP25Q9UHP3 1055 aa29.51■■■□□ 2.31
SOX1-201ENST00000330949 SETBP1Q9Y6X0 1596 aa29.51■■■□□ 2.31
SOX1-201ENST00000330949 ADCY5O95622 1261 aa29.49■■■□□ 2.31
SOX1-201ENST00000330949 FBXO31Q5XUX0 539 aaPredicted RBP29.49■■■□□ 2.31
SOX1-201ENST00000330949 MPNDQ8N594 471 aa29.48■■■□□ 2.31
SOX1-201ENST00000330949 PRAM1Q96QH2 718 aa29.48■■■□□ 2.31
SOX1-201ENST00000330949 ANKRD36BQ8N2N9 1353 aa29.48■■■□□ 2.31
SOX1-201ENST00000330949 MCM2P49736 904 aa29.48■■■□□ 2.31
SOX1-201ENST00000330949 C17orf53Q8N3J3 647 aaPredicted RBP29.48■■■□□ 2.31
SOX1-201ENST00000330949 RPGRIP1LQ68CZ1 1315 aa29.48■■■□□ 2.31
SOX1-201ENST00000330949 HECW2Q9P2P5 1572 aa29.47■■■□□ 2.31
SOX1-201ENST00000330949 TULP4Q9NRJ4 1543 aa29.46■■■□□ 2.31
SOX1-201ENST00000330949 A0A1W2PP64 1363 aa29.46■■■□□ 2.31
SOX1-201ENST00000330949 ABCC4O15439 1325 aa29.46■■■□□ 2.31
SOX1-201ENST00000330949 U2AF2P26368 475 aaKnown RBP eCLIP29.46■■■□□ 2.31
SOX1-201ENST00000330949 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.46■■■□□ 2.31
SOX1-201ENST00000330949 MRPL50Q8N5N7 158 aaKnown RBP29.45■■■□□ 2.3
SOX1-201ENST00000330949 TMX3Q96JJ7 454 aa29.45■■■□□ 2.3
SOX1-201ENST00000330949 DCTPP1Q9H773 170 aa29.45■■■□□ 2.3
SOX1-201ENST00000330949 GLI2P10070 1586 aa29.44■■■□□ 2.3
SOX1-201ENST00000330949 TMEM51Q9NW97 253 aa29.44■■■□□ 2.3
SOX1-201ENST00000330949 CTIFO43310 598 aaKnown RBP29.44■■■□□ 2.3
SOX1-201ENST00000330949 OGFRQ9NZT2 677 aa29.44■■■□□ 2.3
SOX1-201ENST00000330949 RIOK3O14730 519 aaKnown RBP29.43■■■□□ 2.3
SOX1-201ENST00000330949 ZNF771Q7L3S4 317 aaPredicted RBP29.43■■■□□ 2.3
SOX1-201ENST00000330949 COL3A1P02461 1466 aaPredicted RBP29.42■■■□□ 2.3
SOX1-201ENST00000330949 TPM3P06753 285 aa29.42■■■□□ 2.3
SOX1-201ENST00000330949 SDSP20132 328 aa29.42■■■□□ 2.3
SOX1-201ENST00000330949 KIAA1524Q8TCG1 905 aa29.41■■■□□ 2.3
SOX1-201ENST00000330949 PUS7Q96PZ0 661 aaKnown RBP29.41■■■□□ 2.3
SOX1-201ENST00000330949 INTS4Q96HW7 963 aaKnown RBP29.4■■■□□ 2.3
SOX1-201ENST00000330949 STAG3Q9UJ98 1225 aa29.4■■■□□ 2.3
SOX1-201ENST00000330949 ERC2O15083 957 aa29.4■■■□□ 2.3
SOX1-201ENST00000330949 FYB1O15117 783 aa29.4■■■□□ 2.3
SOX1-201ENST00000330949 NEK4P51957 841 aa29.4■■■□□ 2.3
SOX1-201ENST00000330949 GABPB1Q06547 395 aaPredicted RBP29.4■■■□□ 2.3
SOX1-201ENST00000330949 CUL4AQ13619 759 aa29.4■■■□□ 2.3
SOX1-201ENST00000330949 CCDC183Q5T5S1 534 aa29.39■■■□□ 2.3
SOX1-201ENST00000330949 CAMSAP1Q5T5Y3 1602 aa29.38■■■□□ 2.29
SOX1-201ENST00000330949 NEXMIFQ5QGS0 1516 aa29.38■■■□□ 2.29
SOX1-201ENST00000330949 VAMP4O75379 141 aa29.38■■■□□ 2.29
SOX1-201ENST00000330949 CGNQ9P2M7 1197 aaKnown RBP29.38■■■□□ 2.29
SOX1-201ENST00000330949 KDM4AO75164 1064 aa29.38■■■□□ 2.29
SOX1-201ENST00000330949 CABP1Q9NZU7 370 aa29.37■■■□□ 2.29
SOX1-201ENST00000330949 C16orf71Q8IYS4 520 aaPredicted RBP29.36■■■□□ 2.29
SOX1-201ENST00000330949 GADD45BO75293 160 aaPredicted RBP29.36■■■□□ 2.29
SOX1-201ENST00000330949 KIF24Q5T7B8 1368 aa29.36■■■□□ 2.29
SOX1-201ENST00000330949 IGSF3O75054 1194 aa29.35■■■□□ 2.29
SOX1-201ENST00000330949 API5Q9BZZ5 524 aaKnown RBP29.35■■■□□ 2.29
SOX1-201ENST00000330949 SYCP1Q15431 976 aa29.35■■■□□ 2.29
SOX1-201ENST00000330949 USP48Q86UV5 1035 aa29.35■■■□□ 2.29
SOX1-201ENST00000330949 KLHL34Q8N239 644 aa29.35■■■□□ 2.29
SOX1-201ENST00000330949 THUMPD2Q9BTF0 503 aaKnown RBP29.35■■■□□ 2.29
SOX1-201ENST00000330949 ELL2O00472 640 aaPredicted RBP29.35■■■□□ 2.29
SOX1-201ENST00000330949 HCLS1P14317 486 aaPredicted RBP29.35■■■□□ 2.29
SOX1-201ENST00000330949 HMOX1P09601 288 aa29.34■■■□□ 2.29
SOX1-201ENST00000330949 NAP1L2Q9ULW6 460 aaPredicted RBP29.34■■■□□ 2.29
SOX1-201ENST00000330949 ARHGEF28Q8N1W1 1705 aaKnown RBP29.34■■■□□ 2.29
SOX1-201ENST00000330949 MX1P20591 662 aa29.32■■■□□ 2.28
SOX1-201ENST00000330949 WDR33Q9C0J8 1336 aaKnown RBP29.32■■■□□ 2.28
SOX1-201ENST00000330949 TERF2IPQ9NYB0 399 aa29.32■■■□□ 2.28
SOX1-201ENST00000330949 KNDC1Q76NI1 1749 aa29.32■■■□□ 2.28
SOX1-201ENST00000330949 GOLGA6L6A8MZA4 724 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 CYB5RLQ6IPT4 315 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 WAPLQ7Z5K2 1190 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 TMEM87AQ8NBN3 555 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 CDK19Q9BWU1 502 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 DIP2CQ9Y2E4 1556 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 DIAPH1O60610 1272 aaKnown RBP29.31■■■□□ 2.28
SOX1-201ENST00000330949 GDPD2Q9HCC8 539 aa29.31■■■□□ 2.28
SOX1-201ENST00000330949 OTUD7AQ8TE49 926 aaPredicted RBP29.3■■■□□ 2.28
SOX1-201ENST00000330949 PYCARDQ9ULZ3 195 aa29.29■■■□□ 2.28
SOX1-201ENST00000330949 MYO5BQ9ULV0 1848 aa29.29■■■□□ 2.28
SOX1-201ENST00000330949 NCBP1Q09161 790 aaKnown RBP29.28■■■□□ 2.28
SOX1-201ENST00000330949 MLECQ14165 292 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 KCNF1Q9H3M0 494 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 PIK3C2BO00750 1634 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 FCHSD2O94868 740 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 CDK11BP21127 795 aaKnown RBP29.28■■■□□ 2.28
SOX1-201ENST00000330949 ANKRD44Q8N8A2 993 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 CTNNA3Q9UI47 895 aa29.28■■■□□ 2.28
SOX1-201ENST00000330949 MCCP23508 829 aa29.27■■■□□ 2.28
SOX1-201ENST00000330949 SLC52A1Q9NWF4 448 aa29.27■■■□□ 2.28
SOX1-201ENST00000330949 TCHHQ07283 1943 aa29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms