RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 GOLGA2Q08379 1002 aa13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 WDR63Q8IWG1 891 aa13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 TATP17735 454 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 PLEKHO1Q53GL0 409 aaPredicted RBP13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 LRRC37A3O60309 1634 aa13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 FBXO41Q8TF61 875 aa13.43□□□□□ -0.26
VIPAS39-201ENST00000327028 MAP3K5Q99683 1374 aa13.42□□□□□ -0.26
VIPAS39-201ENST00000327028 C8orf37Q96NL8 207 aa13.42□□□□□ -0.26
VIPAS39-201ENST00000327028 DISP2A7MBM2 1401 aa13.42□□□□□ -0.26
VIPAS39-201ENST00000327028 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.42□□□□□ -0.262e-6■■■■□ 24.3
VIPAS39-201ENST00000327028 BCL9LQ86UU0 1499 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 IL16Q14005 1332 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 NGLY1Q96IV0 654 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 HTATSF1O43719 755 aaKnown RBP13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 MEX3CQ5U5Q3 659 aaKnown RBP13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 UNC5CLQ8IV45 518 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 CDCA7LQ96GN5 454 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 SHANK3Q9BYB0 1731 aa13.41□□□□□ -0.26
VIPAS39-201ENST00000327028 E9PSI1 815 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 CALD1Q05682 793 aaKnown RBP13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 SLFN5Q08AF3 891 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 ZNF530Q6P9A1 599 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 ADAMTS7Q9UKP4 1686 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 GNAT3A8MTJ3 354 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 IL2RBP14784 551 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 SPG7Q9UQ90 795 aa13.4□□□□□ -0.26
VIPAS39-201ENST00000327028 SPATA31A1Q5TZJ5 1347 aa13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 SPATA31A5Q5VU36 1347 aa13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 SPATA31A7Q8IWB4 1347 aa13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 VIRMAQ69YN4 1812 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 AKAP4Q5JQC9 854 aa13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 TRMT2AQ8IZ69 625 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-201ENST00000327028 RTF1Q92541 710 aaKnown RBP13.38□□□□□ -0.27
VIPAS39-201ENST00000327028 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
VIPAS39-201ENST00000327028 THRAP3Q9Y2W1 955 aaKnown RBP13.38□□□□□ -0.27
VIPAS39-201ENST00000327028 VPS72Q15906 364 aa13.38□□□□□ -0.27
VIPAS39-201ENST00000327028 C1orf141Q5JVX7 400 aa13.38□□□□□ -0.27
VIPAS39-201ENST00000327028 DUSP27Q5VZP5 1158 aa13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 THUMPD2Q9BTF0 503 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 USP35Q9P2H5 1018 aa13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 DCTN1Q14203 1278 aa13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 MCM10Q7L590 875 aa13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 MYH16Q9H6N6 1097 aa13.37□□□□□ -0.27
VIPAS39-201ENST00000327028 SCN11AQ9UI33 1791 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 AFF2P51816 1311 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 USP21Q9UK80 565 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 CEMIPQ8WUJ3 1361 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 PCDH11XQ9BZA7 1347 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 PCDH11YQ9BZA8 1340 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 CDCA7Q9BWT1 371 aaPredicted RBP13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 IFT57Q9NWB7 429 aa13.36□□□□□ -0.27
VIPAS39-201ENST00000327028 ZCRB1Q8TBF4 217 aaKnown RBP13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 TNS2Q63HR2 1409 aa13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 PHKG2P15735 406 aa13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 BARGINQ6ZT62 677 aa13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 IFNL2Q8IZJ0 200 aa13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 ATRNO75882 1429 aa13.35□□□□□ -0.27
VIPAS39-201ENST00000327028 ZNF853P0CG23 659 aa13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 GNAI1P63096 354 aa13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 IL17REQ8NFR9 667 aa13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 CCDC9Q9Y3X0 531 aaKnown RBP13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 SIPA1L3O60292 1781 aaPredicted RBP13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 FANCIQ9NVI1 1328 aa13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 CYP27B1O15528 508 aa13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 KDM6AO15550 1401 aaPredicted RBP13.34□□□□□ -0.27
VIPAS39-201ENST00000327028 MRC1P22897 1456 aa13.33□□□□□ -0.27
VIPAS39-201ENST00000327028 GLI3P10071 1580 aa13.33□□□□□ -0.27
VIPAS39-201ENST00000327028 CFAP44Q96MT7 982 aa13.33□□□□□ -0.28
VIPAS39-201ENST00000327028 THSD7AQ9UPZ6 1657 aa13.33□□□□□ -0.28
VIPAS39-201ENST00000327028 RNMTO43148 476 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-201ENST00000327028 HSP90AB1P08238 724 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-201ENST00000327028 MPRIPQ6WCQ1 1025 aa13.32□□□□□ -0.28
VIPAS39-201ENST00000327028 KDM3BQ7LBC6 1761 aa13.31□□□□□ -0.28
VIPAS39-201ENST00000327028 TSR2Q969E8 191 aaKnown RBP13.31□□□□□ -0.28
VIPAS39-201ENST00000327028 LGR6Q9HBX8 967 aa13.31□□□□□ -0.28
VIPAS39-201ENST00000327028 DCAF5Q96JK2 942 aa13.31□□□□□ -0.28
VIPAS39-201ENST00000327028 LAS1LQ9Y4W2 734 aaKnown RBP13.31□□□□□ -0.28
VIPAS39-201ENST00000327028 CHL1O00533 1208 aa13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 NKX1-1Q15270 411 aaPredicted RBP13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 MBIPQ9NS73 344 aa13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 TRPC5Q9UL62 973 aaPredicted RBP13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 TOGARAM1Q9Y4F4 1720 aa13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 BABAM1Q9NWV8 329 aa13.3□□□□□ -0.28
VIPAS39-201ENST00000327028 EXOC5O00471 708 aa13.29□□□□□ -0.28
VIPAS39-201ENST00000327028 TEFQ10587 303 aa13.29□□□□□ -0.28
VIPAS39-201ENST00000327028 TAF7Q15545 349 aaPredicted RBP13.29□□□□□ -0.28
VIPAS39-201ENST00000327028 GJD4Q96KN9 370 aaPredicted RBP13.29□□□□□ -0.28
VIPAS39-201ENST00000327028 FAM98CQ17RN3 349 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-201ENST00000327028 DDX54Q8TDD1 881 aaKnown RBP13.28□□□□□ -0.28
VIPAS39-201ENST00000327028 DDB1Q16531 1140 aa13.28□□□□□ -0.28
VIPAS39-201ENST00000327028 RCAN3Q9UKA8 241 aa13.28□□□□□ -0.28
VIPAS39-201ENST00000327028 CT47B1P0C2W7 299 aaPredicted RBP13.27□□□□□ -0.28
VIPAS39-201ENST00000327028 EXOSC9Q06265 439 aaKnown RBP13.27□□□□□ -0.28
VIPAS39-201ENST00000327028 SLC52A2Q9HAB3 445 aa13.27□□□□□ -0.28
VIPAS39-201ENST00000327028 TSPYL4Q9UJ04 414 aa13.27□□□□□ -0.28
VIPAS39-201ENST00000327028 DOT1LQ8TEK3 1739 aa13.26□□□□□ -0.29
VIPAS39-201ENST00000327028 ZNF772Q68DY9 489 aaPredicted RBP13.26□□□□□ -0.29
VIPAS39-201ENST00000327028 PAPPAQ13219 1627 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms