RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 CHMP4BQ9H444 224 aaKnown RBP11.94□□□□□ -0.5
CAPN3-201ENST00000318023 KRT27Q7Z3Y8 459 aa11.93□□□□□ -0.5
CAPN3-201ENST00000318023 KAT6BQ8WYB5 2073 aa11.93□□□□□ -0.5
CAPN3-201ENST00000318023 SSH2Q76I76 1423 aa11.93□□□□□ -0.5
CAPN3-201ENST00000318023 PRDM10Q9NQV6 1147 aa11.93□□□□□ -0.5
CAPN3-201ENST00000318023 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
CAPN3-201ENST00000318023 C8orf34Q49A92 452 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 SYTL4Q96C24 671 aaPredicted RBP11.92□□□□□ -0.5
CAPN3-201ENST00000318023 ACSBG1Q96GR2 724 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 CAMTA1Q9Y6Y1 1673 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 SPATA31A5Q5VU36 1347 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 SPATA31A7Q8IWB4 1347 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 TRIM37O94972 964 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 SPATA31A1Q5TZJ5 1347 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 ITSN1Q15811 1721 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 SLIT2O94813 1529 aa11.92□□□□□ -0.5
CAPN3-201ENST00000318023 TPM2P07951 284 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 KIAA1211Q6ZU35 1233 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 TRPM3Q9HCF6 1732 aaPredicted RBP11.91□□□□□ -0.5
CAPN3-201ENST00000318023 HOXC9P31274 260 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 FAM161AQ3B820 660 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 PTF1AQ7RTS3 328 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 UPF1Q92900 1129 aaKnown RBP eCLIP11.91□□□□□ -0.5
CAPN3-201ENST00000318023 CRBNQ96SW2 442 aa11.91□□□□□ -0.5
CAPN3-201ENST00000318023 FAM13BQ9NYF5 915 aa11.9□□□□□ -0.5
CAPN3-201ENST00000318023 TOPAZ1Q8N9V7 1692 aa11.9□□□□□ -0.5
CAPN3-201ENST00000318023 GTF2E1P29083 439 aaPredicted RBP11.9□□□□□ -0.5
CAPN3-201ENST00000318023 DDB1Q16531 1140 aa11.9□□□□□ -0.5
CAPN3-201ENST00000318023 NAP1L2Q9ULW6 460 aaPredicted RBP11.9□□□□□ -0.5
CAPN3-201ENST00000318023 ATRNO75882 1429 aa11.9□□□□□ -0.51
CAPN3-201ENST00000318023 GOLGB1Q14789 3259 aaKnown RBP11.9□□□□□ -0.51
CAPN3-201ENST00000318023 NBPF6Q5VWK0 638 aa11.89□□□□□ -0.51
CAPN3-201ENST00000318023 NBPF4Q96M43 638 aa11.89□□□□□ -0.51
CAPN3-201ENST00000318023 PUS7Q96PZ0 661 aaKnown RBP11.89□□□□□ -0.51
CAPN3-201ENST00000318023 PIK3C2AO00443 1686 aa11.89□□□□□ -0.51
CAPN3-201ENST00000318023 ERBB3P21860 1342 aa11.89□□□□□ -0.51
CAPN3-201ENST00000318023 WDR17Q8IZU2 1322 aa11.89□□□□□ -0.51
CAPN3-201ENST00000318023 ALS2Q96Q42 1657 aa11.88□□□□□ -0.51
CAPN3-201ENST00000318023 FSD2A1L4K1 749 aa11.88□□□□□ -0.51
CAPN3-201ENST00000318023 IP6K1Q92551 441 aa11.88□□□□□ -0.51
CAPN3-201ENST00000318023 POLKQ9UBT6 870 aa11.88□□□□□ -0.51
CAPN3-201ENST00000318023 UTRNP46939 3433 aa11.88□□□□□ -0.51
CAPN3-201ENST00000318023 SF3B2Q13435 895 aaKnown RBP11.88□□□□□ -0.51
CAPN3-201ENST00000318023 MYH16Q9H6N6 1097 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 AATKQ6ZMQ8 1374 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 NINLQ9Y2I6 1382 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 EN1Q05925 392 aaPredicted RBP11.87□□□□□ -0.51
CAPN3-201ENST00000318023 EXOC5O00471 708 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 U2SURPO15042 1029 aaKnown RBP11.87□□□□□ -0.51
CAPN3-201ENST00000318023 HMOX1P09601 288 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 MTHFSP49914 203 aa11.87□□□□□ -0.51
CAPN3-201ENST00000318023 TRIM44Q96DX7 344 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-201ENST00000318023 COL5A2P05997 1499 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-201ENST00000318023 SPRYD3Q8NCJ5 442 aa11.86□□□□□ -0.51
CAPN3-201ENST00000318023 OVOS2A0A0J9YW53 1432 aa11.86□□□□□ -0.51
CAPN3-201ENST00000318023 OVOS2Q6IE36 1432 aa11.86□□□□□ -0.51
CAPN3-201ENST00000318023 CPDO75976 1380 aa11.86□□□□□ -0.51
CAPN3-201ENST00000318023 KCNQ2O43526 872 aa11.85□□□□□ -0.51
CAPN3-201ENST00000318023 KCNQ4P56696 695 aa11.85□□□□□ -0.51
CAPN3-201ENST00000318023 AMER1Q5JTC6 1135 aaPredicted RBP11.85□□□□□ -0.51
CAPN3-201ENST00000318023 PNISRQ8TF01 805 aaKnown RBP11.85□□□□□ -0.51
CAPN3-201ENST00000318023 COL22A1Q8NFW1 1626 aaPredicted RBP11.85□□□□□ -0.51
CAPN3-201ENST00000318023 RIPK4P57078 832 aa11.85□□□□□ -0.51
CAPN3-201ENST00000318023 AEBP1Q8IUX7 1158 aa11.85□□□□□ -0.51
CAPN3-201ENST00000318023 NRKQ7Z2Y5 1582 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 APBA3O96018 575 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 C20orf194Q5TEA3 1177 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 RAPGEF4Q8WZA2 1011 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 CDCA7LQ96GN5 454 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 USP31Q70CQ4 1352 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 PSDA5PKW4 1024 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-201ENST00000318023 CANXP27824 592 aaKnown RBP11.84□□□□□ -0.51
CAPN3-201ENST00000318023 CARD10Q9BWT7 1032 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 GLI3P10071 1580 aa11.84□□□□□ -0.51
CAPN3-201ENST00000318023 IL2RBP14784 551 aa11.83□□□□□ -0.51
CAPN3-201ENST00000318023 PAXIP1Q6ZW49 1069 aaPredicted RBP11.83□□□□□ -0.51
CAPN3-201ENST00000318023 MARCH10Q8NA82 808 aaPredicted RBP11.83□□□□□ -0.51
CAPN3-201ENST00000318023 CRB1P82279 1406 aa11.83□□□□□ -0.52
CAPN3-201ENST00000318023 PER1O15534 1290 aaPredicted RBP11.83□□□□□ -0.52
CAPN3-201ENST00000318023 EYA1Q99502 592 aa11.83□□□□□ -0.52
CAPN3-201ENST00000318023 EIF4A2Q14240 407 aaKnown RBP11.83□□□□□ -0.52
CAPN3-201ENST00000318023 BRD4O60885 1362 aaPredicted RBP11.82□□□□□ -0.52
CAPN3-201ENST00000318023 MRE11P49959 708 aa11.82□□□□□ -0.52
CAPN3-201ENST00000318023 GRPEL1Q9HAV7 217 aa11.82□□□□□ -0.52
CAPN3-201ENST00000318023 PHRF1Q9P1Y6 1649 aaKnown RBP11.82□□□□□ -0.52
CAPN3-201ENST00000318023 SULT6B1Q6IMI4 303 aa11.81□□□□□ -0.52
CAPN3-201ENST00000318023 PLCH1Q4KWH8 1693 aa11.81□□□□□ -0.52
CAPN3-201ENST00000318023 ABCA3Q99758 1704 aa11.81□□□□□ -0.52
CAPN3-201ENST00000318023 EZH2Q15910 746 aaKnown RBP11.8□□□□□ -0.52
CAPN3-201ENST00000318023 SMAP1Q8IYB5 467 aaPredicted RBP11.8□□□□□ -0.52
CAPN3-201ENST00000318023 KDM2BQ8NHM5 1336 aa11.8□□□□□ -0.52
CAPN3-201ENST00000318023 VGLL3A8MV65 326 aa11.8□□□□□ -0.52
CAPN3-201ENST00000318023 NFAT5O94916 1531 aa11.8□□□□□ -0.52
CAPN3-201ENST00000318023 AKAP12Q02952 1782 aa11.8□□□□□ -0.52
CAPN3-201ENST00000318023 FLT4P35916 1363 aa11.8□□□□□ -0.52
CAPN3-201ENST00000318023 ONECUT3O60422 494 aaPredicted RBP11.79□□□□□ -0.52
CAPN3-201ENST00000318023 SEC24BO95487 1268 aa11.79□□□□□ -0.52
CAPN3-201ENST00000318023 TATP17735 454 aaPredicted RBP11.79□□□□□ -0.52
CAPN3-201ENST00000318023 TAF7LQ5H9L4 462 aa11.79□□□□□ -0.52
CAPN3-201ENST00000318023 MPRIPQ6WCQ1 1025 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms