RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 ZCRB1Q8TBF4 217 aaKnown RBP16.36■□□□□ 0.21
SCFD1-201ENST00000311943 CYP27B1O15528 508 aa16.35■□□□□ 0.21
SCFD1-201ENST00000311943 RAPGEF4Q8WZA2 1011 aa16.35■□□□□ 0.21
SCFD1-201ENST00000311943 CDCA7Q9BWT1 371 aaPredicted RBP16.35■□□□□ 0.21
SCFD1-201ENST00000311943 NPC1L1Q9UHC9 1359 aa16.34■□□□□ 0.21
SCFD1-201ENST00000311943 IGSF1Q8N6C5 1336 aa16.34■□□□□ 0.21
SCFD1-201ENST00000311943 SULT6B1Q6IMI4 303 aa16.34■□□□□ 0.21
SCFD1-201ENST00000311943 KAT6BQ8WYB5 2073 aa16.34■□□□□ 0.21
SCFD1-201ENST00000311943 TATP17735 454 aaPredicted RBP16.33■□□□□ 0.21
SCFD1-201ENST00000311943 NCAPD2Q15021 1401 aa16.33■□□□□ 0.2
SCFD1-201ENST00000311943 KCNQ4P56696 695 aa16.33■□□□□ 0.2
SCFD1-201ENST00000311943 SF3B2Q13435 895 aaKnown RBP16.33■□□□□ 0.2
SCFD1-201ENST00000311943 COL3A1P02461 1466 aaPredicted RBP16.32■□□□□ 0.2
SCFD1-201ENST00000311943 PRIM1P49642 420 aaKnown RBP16.31■□□□□ 0.2
SCFD1-201ENST00000311943 PROM2Q8N271 834 aa16.31■□□□□ 0.2
SCFD1-201ENST00000311943 SYTL4Q96C24 671 aaPredicted RBP16.31■□□□□ 0.2
SCFD1-201ENST00000311943 CAMKK2Q96RR4 588 aa16.31■□□□□ 0.2
SCFD1-201ENST00000311943 RGPD1P0DJD0 1748 aa16.31■□□□□ 0.2
SCFD1-201ENST00000311943 CCDC125Q86Z20 511 aa16.3■□□□□ 0.2
SCFD1-201ENST00000311943 U2SURPO15042 1029 aaKnown RBP16.29■□□□□ 0.2
SCFD1-201ENST00000311943 PSDA5PKW4 1024 aaPredicted RBP16.29■□□□□ 0.2
SCFD1-201ENST00000311943 ZNF316A6NFI3 1004 aaPredicted RBP16.29■□□□□ 0.2
SCFD1-201ENST00000311943 DIAPH1O60610 1272 aaKnown RBP16.29■□□□□ 0.2
SCFD1-201ENST00000311943 BAG6P46379 1132 aa16.29■□□□□ 0.2
SCFD1-201ENST00000311943 DOT1LQ8TEK3 1739 aa16.28■□□□□ 0.2
SCFD1-201ENST00000311943 PARD3Q8TEW0 1356 aa16.28■□□□□ 0.2
SCFD1-201ENST00000311943 BCL11BQ9C0K0 894 aaPredicted RBP16.28■□□□□ 0.2
SCFD1-201ENST00000311943 TOGARAM1Q9Y4F4 1720 aa16.27■□□□□ 0.2
SCFD1-201ENST00000311943 PKD1L3Q7Z443 1732 aa16.26■□□□□ 0.19
SCFD1-201ENST00000311943 PHKG2P15735 406 aa16.25■□□□□ 0.19
SCFD1-201ENST00000311943 MPRIPQ6WCQ1 1025 aa16.25■□□□□ 0.19
SCFD1-201ENST00000311943 BTAF1O14981 1849 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 PCDH11XQ9BZA7 1347 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 PCDH11YQ9BZA8 1340 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 NHSQ6T4R5 1651 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 BCL9O00512 1426 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 PHACTR3Q96KR7 559 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 PDGFDQ9GZP0 370 aaPredicted RBP16.24■□□□□ 0.19
SCFD1-201ENST00000311943 ANO8Q9HCE9 1232 aaPredicted RBP16.24■□□□□ 0.19
SCFD1-201ENST00000311943 KDRP35968 1356 aa16.24■□□□□ 0.19
SCFD1-201ENST00000311943 CCDC184Q52MB2 194 aa16.23■□□□□ 0.19
SCFD1-201ENST00000311943 LRRC4BQ9NT99 713 aa16.23■□□□□ 0.19
SCFD1-201ENST00000311943 R3HDM1Q15032 1099 aaKnown RBP16.23■□□□□ 0.19
SCFD1-201ENST00000311943 MTHFSDQ2M296 383 aaKnown RBP16.23■□□□□ 0.19
SCFD1-201ENST00000311943 SPG7Q9UQ90 795 aa16.23■□□□□ 0.19
SCFD1-201ENST00000311943 TXNRD1Q16881 649 aa16.22■□□□□ 0.19
SCFD1-201ENST00000311943 ZNF530Q6P9A1 599 aaPredicted RBP16.22■□□□□ 0.19
SCFD1-201ENST00000311943 LGR6Q9HBX8 967 aa16.21■□□□□ 0.19
SCFD1-201ENST00000311943 KDM6AO15550 1401 aaPredicted RBP16.21■□□□□ 0.19
SCFD1-201ENST00000311943 PIGBQ92521 554 aa16.21■□□□□ 0.18
SCFD1-201ENST00000311943 U2AF1L5P0DN76 240 aaPredicted RBP16.2■□□□□ 0.18
SCFD1-201ENST00000311943 U2AF1Q01081 240 aaKnown RBP eCLIP16.2■□□□□ 0.188e-6■■□□□ 11.7
SCFD1-201ENST00000311943 NUP188Q5SRE5 1749 aa16.2■□□□□ 0.18
SCFD1-201ENST00000311943 SENP3-EIF4A1A0A087X0R7 540 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 PLSCR1O15162 318 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 PRKAR2BP31323 418 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 SMIM5Q71RC9 77 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 IFNL2Q8IZJ0 200 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 PRKRIP1Q9H875 184 aaPredicted RBP16.19■□□□□ 0.18
SCFD1-201ENST00000311943 NKX1-1Q15270 411 aaPredicted RBP16.19■□□□□ 0.18
SCFD1-201ENST00000311943 PLEKHO1Q53GL0 409 aaPredicted RBP16.19■□□□□ 0.18
SCFD1-201ENST00000311943 RSPH6AQ9H0K4 717 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 ITGB4P16144 1822 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 RREB1Q92766 1687 aa16.19■□□□□ 0.18
SCFD1-201ENST00000311943 ASAP1Q9ULH1 1129 aa16.18■□□□□ 0.18
SCFD1-201ENST00000311943 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.18■□□□□ 0.182e-8■■■□□ 14.9
SCFD1-201ENST00000311943 CFAP53Q96M91 514 aa16.17■□□□□ 0.18
SCFD1-201ENST00000311943 ZNF827Q17R98 1081 aa16.16■□□□□ 0.18
SCFD1-201ENST00000311943 RALBP1Q15311 655 aa16.15■□□□□ 0.18
SCFD1-201ENST00000311943 NFATC2IPQ8NCF5 419 aa16.14■□□□□ 0.17
SCFD1-201ENST00000311943 MYBBP1AQ9BQG0 1328 aaKnown RBP16.14■□□□□ 0.17
SCFD1-201ENST00000311943 DCTN1Q14203 1278 aa16.14■□□□□ 0.17
SCFD1-201ENST00000311943 AMOTQ4VCS5 1084 aa16.14■□□□□ 0.17
SCFD1-201ENST00000311943 AMIGO3Q86WK7 504 aa16.14■□□□□ 0.17
SCFD1-201ENST00000311943 C1orf141Q5JVX7 400 aa16.13■□□□□ 0.17
SCFD1-201ENST00000311943 SLC4A9Q96Q91 983 aa16.13■□□□□ 0.17
SCFD1-201ENST00000311943 ATG3Q9NT62 314 aa16.13■□□□□ 0.17
SCFD1-201ENST00000311943 TMOD3Q9NYL9 352 aa16.12■□□□□ 0.17
SCFD1-201ENST00000311943 PALLDQ8WX93 1383 aa16.12■□□□□ 0.17
SCFD1-201ENST00000311943 SLC39A6Q13433 755 aa16.12■□□□□ 0.17
SCFD1-201ENST00000311943 CCDC146Q8IYE0 955 aa16.12■□□□□ 0.17
SCFD1-201ENST00000311943 IL17REQ8NFR9 667 aa16.12■□□□□ 0.17
SCFD1-201ENST00000311943 DCAF5Q96JK2 942 aa16.11■□□□□ 0.17
SCFD1-201ENST00000311943 CCNL1Q9UK58 526 aaPredicted RBP16.11■□□□□ 0.17
SCFD1-201ENST00000311943 NUDCQ9Y266 331 aa16.11■□□□□ 0.17
SCFD1-201ENST00000311943 AKAP4Q5JQC9 854 aa16.11■□□□□ 0.17
SCFD1-201ENST00000311943 PLEKHF1Q96S99 279 aa16.11■□□□□ 0.17
SCFD1-201ENST00000311943 RNMTO43148 476 aaKnown RBP16.1■□□□□ 0.17
SCFD1-201ENST00000311943 CABP4P57796 275 aa16.1■□□□□ 0.17
SCFD1-201ENST00000311943 MCM10Q7L590 875 aa16.1■□□□□ 0.17
SCFD1-201ENST00000311943 LY75O60449 1722 aa16.1■□□□□ 0.17
SCFD1-201ENST00000311943 ITPK1Q13572 414 aa16.09■□□□□ 0.17
SCFD1-201ENST00000311943 THUMPD2Q9BTF0 503 aaKnown RBP16.09■□□□□ 0.17
SCFD1-201ENST00000311943 RGPD3A6NKT7 1758 aaPredicted RBP16.09■□□□□ 0.17
SCFD1-201ENST00000311943 RGPD4Q7Z3J3 1758 aa16.09■□□□□ 0.17
SCFD1-201ENST00000311943 PTCD1O75127 700 aaKnown RBP16.09■□□□□ 0.17
SCFD1-201ENST00000311943 VIRMAQ69YN4 1812 aaKnown RBP16.09■□□□□ 0.17
SCFD1-201ENST00000311943 PAPPAQ13219 1627 aa16.09■□□□□ 0.17
SCFD1-201ENST00000311943 ADAMTS8Q9UP79 889 aa16.08■□□□□ 0.16
SCFD1-201ENST00000311943 RRP7AQ9Y3A4 280 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms