RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 C8orf34Q49A92 452 aa8.35□□□□□ -1.07
USP47-201ENST00000305481 USHBP1Q8N6Y0 703 aa8.35□□□□□ -1.07
USP47-201ENST00000305481 GCP02774 474 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 NBPF6Q5VWK0 638 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 KCNH5Q8NCM2 988 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 GAS2L2Q8NHY3 880 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 NBPF4Q96M43 638 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 PHRF1Q9P1Y6 1649 aaKnown RBP8.34□□□□□ -1.07
USP47-201ENST00000305481 SLIT3O75094 1523 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 KRT28Q7Z3Y7 464 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 RWDD1Q9H446 243 aaPredicted RBP8.34□□□□□ -1.07
USP47-201ENST00000305481 KIAA0232Q92628 1395 aa8.34□□□□□ -1.07
USP47-201ENST00000305481 MST1RQ04912 1400 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 ZBTB7BO15156 539 aaPredicted RBP8.33□□□□□ -1.08
USP47-201ENST00000305481 ARHGEF25Q86VW2 580 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 MSH6P52701 1360 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 ABCC4O15439 1325 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 USP19O94966 1318 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 HDAC1Q13547 482 aaPredicted RBP8.33□□□□□ -1.08
USP47-201ENST00000305481 RTF1Q92541 710 aaKnown RBP8.33□□□□□ -1.08
USP47-201ENST00000305481 LRRC37A3O60309 1634 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 HTATSF1O43719 755 aaKnown RBP8.33□□□□□ -1.08
USP47-201ENST00000305481 FAM161AQ3B820 660 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 IL17REQ8NFR9 667 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 PDZRN3Q9UPQ7 1066 aa8.33□□□□□ -1.08
USP47-201ENST00000305481 KDM4FA0A1W2PPD8 638 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 GNAT3A8MTJ3 354 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 DDX17Q92841 729 aaKnown RBP8.32□□□□□ -1.08
USP47-201ENST00000305481 RGPD2P0DJD1 1756 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 KIF1AQ12756 1690 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 ZBTB7CA1YPR0 619 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 LRRC59Q96AG4 307 aaKnown RBP8.32□□□□□ -1.08
USP47-201ENST00000305481 LMOD2Q6P5Q4 547 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 IPO9Q96P70 1041 aaKnown RBP8.32□□□□□ -1.08
USP47-201ENST00000305481 AXIN2Q9Y2T1 843 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 RGS12O14924 1447 aa8.32□□□□□ -1.08
USP47-201ENST00000305481 ATF3P18847 181 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 ANP32AP39687 249 aaKnown RBP8.31□□□□□ -1.08
USP47-201ENST00000305481 NPM2Q86SE8 214 aaKnown RBP8.31□□□□□ -1.08
USP47-201ENST00000305481 TSPYL4Q9UJ04 414 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 MAP3K5Q99683 1374 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 ALS2Q96Q42 1657 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 DCCP43146 1447 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 NCOA3Q9Y6Q9 1424 aa8.31□□□□□ -1.08
USP47-201ENST00000305481 MED1Q15648 1581 aaPredicted RBP8.3□□□□□ -1.08
USP47-201ENST00000305481 SMC5Q8IY18 1101 aa8.3□□□□□ -1.08
USP47-201ENST00000305481 ANO8Q9HCE9 1232 aaPredicted RBP8.3□□□□□ -1.08
USP47-201ENST00000305481 NCAPD2Q15021 1401 aa8.3□□□□□ -1.08
USP47-201ENST00000305481 API5Q9BZZ5 524 aaKnown RBP8.3□□□□□ -1.08
USP47-201ENST00000305481 LMTK3Q96Q04 1460 aa8.3□□□□□ -1.08
USP47-201ENST00000305481 C1orf115Q9H7X2 142 aa8.3□□□□□ -1.08
USP47-201ENST00000305481 SIRT2Q8IXJ6 389 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 ANP32EQ9BTT0 268 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 CEMIPQ8WUJ3 1361 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 STRCQ7RTU9 1775 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 XIRP1Q702N8 1843 aaKnown RBP8.29□□□□□ -1.08
USP47-201ENST00000305481 SLC4A2P04920 1241 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 INTS3Q68E01 1043 aaKnown RBP8.29□□□□□ -1.08
USP47-201ENST00000305481 ANKRD24Q8TF21 1146 aa8.29□□□□□ -1.08
USP47-201ENST00000305481 HAP1P54257 671 aaPredicted RBP8.28□□□□□ -1.08
USP47-201ENST00000305481 G2E3Q7L622 706 aa8.28□□□□□ -1.08
USP47-201ENST00000305481 TAF7Q15545 349 aaPredicted RBP8.28□□□□□ -1.08
USP47-201ENST00000305481 CADPS2Q86UW7 1296 aa8.28□□□□□ -1.08
USP47-201ENST00000305481 LGR6Q9HBX8 967 aa8.28□□□□□ -1.08
USP47-201ENST00000305481 SEC24BO95487 1268 aa8.28□□□□□ -1.08
USP47-201ENST00000305481 ZC3H6P61129 1189 aaKnown RBP8.28□□□□□ -1.08
USP47-201ENST00000305481 NOP58Q9Y2X3 529 aaKnown RBP8.28□□□□□ -1.08
USP47-201ENST00000305481 RGPD5Q99666 1765 aa8.27□□□□□ -1.08
USP47-201ENST00000305481 PTPRCP08575 1304 aa8.27□□□□□ -1.08
USP47-201ENST00000305481 CAMTA1Q9Y6Y1 1673 aa8.27□□□□□ -1.09
USP47-201ENST00000305481 BABAM1Q9NWV8 329 aa8.27□□□□□ -1.09
USP47-201ENST00000305481 PXDNQ92626 1479 aa8.27□□□□□ -1.09
USP47-201ENST00000305481 VIRMAQ69YN4 1812 aaKnown RBP8.27□□□□□ -1.09
USP47-201ENST00000305481 NUCB1Q02818 461 aa8.27□□□□□ -1.09
USP47-201ENST00000305481 CABLES1Q8TDN4 633 aa8.27□□□□□ -1.09
USP47-201ENST00000305481 LMO7Q8WWI1 1683 aa8.26□□□□□ -1.09
USP47-201ENST00000305481 ERBB3P21860 1342 aa8.26□□□□□ -1.09
USP47-201ENST00000305481 NPHP3Q7Z494 1330 aa8.26□□□□□ -1.09
USP47-201ENST00000305481 CHMP4BQ9H444 224 aaKnown RBP8.26□□□□□ -1.09
USP47-201ENST00000305481 AKAP4Q5JQC9 854 aa8.26□□□□□ -1.09
USP47-201ENST00000305481 ZNF335Q9H4Z2 1342 aaPredicted RBP8.25□□□□□ -1.09
USP47-201ENST00000305481 F6X3S4 739 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 PLEKHO1Q53GL0 409 aaPredicted RBP8.25□□□□□ -1.09
USP47-201ENST00000305481 ZNF530Q6P9A1 599 aaPredicted RBP8.25□□□□□ -1.09
USP47-201ENST00000305481 MPRIPQ6WCQ1 1025 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 BRINP3Q76B58 766 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 COL18A1P39060 1754 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 SPATA31A3Q5VYP0 1347 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 KCNQ3O43525 872 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 AMOTQ4VCS5 1084 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 NECTIN2Q92692 538 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 ZBTB47Q9UFB7 747 aaPredicted RBP8.25□□□□□ -1.09
USP47-201ENST00000305481 TNS3Q68CZ2 1445 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 CHD1LQ86WJ1 897 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 ATP10DQ9P241 1426 aa8.25□□□□□ -1.09
USP47-201ENST00000305481 FAM208AQ9UK61 1670 aaKnown RBP8.24□□□□□ -1.09
USP47-201ENST00000305481 CRYBG1Q9Y4K1 1723 aa8.24□□□□□ -1.09
USP47-201ENST00000305481 CCDC30Q5VVM6 783 aa8.24□□□□□ -1.09
USP47-201ENST00000305481 MEIS3Q99687 375 aa8.24□□□□□ -1.09
USP47-201ENST00000305481 LNPKQ9C0E8 428 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms