RNA–Protein interactions for RNA: ENST00000304060.9

ZNF440-201, Transcript of zinc finger protein 440, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF440, Length 4,189 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF440-201ENST00000304060 RTCBQ9Y3I0 505 aaKnown RBP8.06□□□□□ -1.12
ZNF440-201ENST00000304060 RFC4P35249 363 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 PRELPP51888 382 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 ANP32EQ9BTT0 268 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 TMOD3Q9NYL9 352 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 PCDH11XQ9BZA7 1347 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 PCDH11YQ9BZA8 1340 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 SSFA2P28290 1259 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 TRAPPC3LQ5T215 181 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 NRAPQ86VF7 1730 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 PDZRN3Q9UPQ7 1066 aa8.05□□□□□ -1.12
ZNF440-201ENST00000304060 CAMTA1Q9Y6Y1 1673 aa8.04□□□□□ -1.12
ZNF440-201ENST00000304060 IP6K1Q92551 441 aa8.04□□□□□ -1.12
ZNF440-201ENST00000304060 ROCK2O75116 1388 aaKnown RBP8.04□□□□□ -1.12
ZNF440-201ENST00000304060 PHF14O94880 888 aa8.04□□□□□ -1.12
ZNF440-201ENST00000304060 ANKRD36BQ8N2N9 1353 aa8.04□□□□□ -1.12
ZNF440-201ENST00000304060 DALRD3Q5D0E6 543 aaKnown RBP8.03□□□□□ -1.12
ZNF440-201ENST00000304060 PIM2Q9P1W9 311 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 MPRIPQ6WCQ1 1025 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 KLRG1Q96E93 195 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 ERBB3P21860 1342 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 TNS1Q9HBL0 1735 aaKnown RBP8.03□□□□□ -1.12
ZNF440-201ENST00000304060 TMF1P82094 1093 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 AKT1S1Q96B36 256 aa8.03□□□□□ -1.12
ZNF440-201ENST00000304060 NEUROD1Q13562 356 aa8.02□□□□□ -1.13
ZNF440-201ENST00000304060 PNPLA7Q6ZV29 1317 aa8.02□□□□□ -1.13
ZNF440-201ENST00000304060 VEGFAP15692 232 aaPredicted RBP8.02□□□□□ -1.13
ZNF440-201ENST00000304060 CARD11Q9BXL7 1154 aa8.02□□□□□ -1.13
ZNF440-201ENST00000304060 PCDH10Q9P2E7 1040 aa8.02□□□□□ -1.13
ZNF440-201ENST00000304060 ZC3H4Q9UPT8 1303 aaKnown RBP8.02□□□□□ -1.13
ZNF440-201ENST00000304060 GNPATO15228 680 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 ZNF827Q17R98 1081 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 CFAP44Q96MT7 982 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 RNF181Q9P0P0 153 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 ZPR1O75312 459 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 PROM2Q8N271 834 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 NLGN2Q8NFZ4 835 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 NUP188Q5SRE5 1749 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 RREB1Q92766 1687 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 ALS2Q96Q42 1657 aa8.01□□□□□ -1.13
ZNF440-201ENST00000304060 RGPD3A6NKT7 1758 aaPredicted RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 RGPD4Q7Z3J3 1758 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 SOGA3Q5TF21 947 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 PUS7Q96PZ0 661 aaKnown RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 SGIP1Q9BQI5 828 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 ABCC6O95255 1503 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 TRIM26Q12899 539 aaPredicted RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 C1orf141Q5JVX7 400 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 COL23A1Q86Y22 540 aaPredicted RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 CTCFP49711 727 aaPredicted RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 RBM42Q9BTD8 480 aaKnown RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 RAB3GAP2Q9H2M9 1393 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 ATP6V1AP38606 617 aa8□□□□□ -1.13
ZNF440-201ENST00000304060 PARP4Q9UKK3 1724 aaKnown RBP8□□□□□ -1.13
ZNF440-201ENST00000304060 ABCA3Q99758 1704 aa7.99□□□□□ -1.13
ZNF440-201ENST00000304060 IQCA1LA6NCM1 817 aa7.99□□□□□ -1.13
ZNF440-201ENST00000304060 C9orf131Q5VYM1 1079 aa7.99□□□□□ -1.13
ZNF440-201ENST00000304060 PAXIP1Q6ZW49 1069 aaPredicted RBP7.99□□□□□ -1.13
ZNF440-201ENST00000304060 PALLDQ8WX93 1383 aa7.99□□□□□ -1.13
ZNF440-201ENST00000304060 MMP10P09238 476 aa7.99□□□□□ -1.13
ZNF440-201ENST00000304060 PPM1GO15355 546 aaPredicted RBP7.98□□□□□ -1.13
ZNF440-201ENST00000304060 PLEKHO1Q53GL0 409 aaPredicted RBP7.98□□□□□ -1.13
ZNF440-201ENST00000304060 IFNL2Q8IZJ0 200 aa7.98□□□□□ -1.13
ZNF440-201ENST00000304060 PDGFDQ9GZP0 370 aaPredicted RBP7.98□□□□□ -1.13
ZNF440-201ENST00000304060 CLEC11AQ9Y240 323 aa7.98□□□□□ -1.13
ZNF440-201ENST00000304060 TRPM3Q9HCF6 1732 aaPredicted RBP7.98□□□□□ -1.13
ZNF440-201ENST00000304060 A0A087WZG4 1122 aa7.98□□□□□ -1.13
ZNF440-201ENST00000304060 YBX3P16989 372 aaKnown RBP eCLIP7.97□□□□□ -1.13
ZNF440-201ENST00000304060 USP31Q70CQ4 1352 aa7.97□□□□□ -1.13
ZNF440-201ENST00000304060 TOPAZ1Q8N9V7 1692 aa7.97□□□□□ -1.13
ZNF440-201ENST00000304060 ECE1P42892 770 aa7.97□□□□□ -1.13
ZNF440-201ENST00000304060 RTL1A6NKG5 1358 aa7.97□□□□□ -1.13
ZNF440-201ENST00000304060 TONSLQ96HA7 1378 aa7.97□□□□□ -1.13
ZNF440-201ENST00000304060 HSPA1AP0DMV8 641 aaKnown RBP7.97□□□□□ -1.13
ZNF440-201ENST00000304060 HSPA1BP0DMV9 641 aaKnown RBP7.97□□□□□ -1.13
ZNF440-201ENST00000304060 PHRF1Q9P1Y6 1649 aaKnown RBP7.97□□□□□ -1.13
ZNF440-201ENST00000304060 EDC4Q6P2E9 1401 aaKnown RBP7.97□□□□□ -1.13
ZNF440-201ENST00000304060 NME9Q86XW9 330 aa7.96□□□□□ -1.13
ZNF440-201ENST00000304060 AXIN2Q9Y2T1 843 aa7.96□□□□□ -1.13
ZNF440-201ENST00000304060 CABP4P57796 275 aa7.96□□□□□ -1.13
ZNF440-201ENST00000304060 MYOM1P52179 1685 aa7.96□□□□□ -1.14
ZNF440-201ENST00000304060 PODXL2Q9NZ53 605 aa7.96□□□□□ -1.14
ZNF440-201ENST00000304060 LOC102724428A0A0B4J2F2 783 aa7.96□□□□□ -1.14
ZNF440-201ENST00000304060 H0YIN7 160 aa7.96□□□□□ -1.14
ZNF440-201ENST00000304060 SIK1P57059 783 aa7.96□□□□□ -1.14
ZNF440-201ENST00000304060 TRPM1Q7Z4N2 1603 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 RGPD8O14715 1765 aaPredicted RBP7.95□□□□□ -1.14
ZNF440-201ENST00000304060 KIF3CO14782 793 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 PPP4R3CPQ6ZMV5 832 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 GTF3C3Q9Y5Q9 886 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 NEFMP07197 916 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 LMNB1P20700 586 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 LMOD1P29536 600 aaPredicted RBP7.95□□□□□ -1.14
ZNF440-201ENST00000304060 RRAGCQ9HB90 399 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 SLIT3O75094 1523 aa7.95□□□□□ -1.14
ZNF440-201ENST00000304060 MAP2K1Q02750 393 aaPredicted RBP7.94□□□□□ -1.14
ZNF440-201ENST00000304060 PRDM10Q9NQV6 1147 aa7.94□□□□□ -1.14
ZNF440-201ENST00000304060 LRRC4BQ9NT99 713 aa7.94□□□□□ -1.14
ZNF440-201ENST00000304060 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms