RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 TYW1BQ6NUM6 668 aa9.11□□□□□ -0.95
DEPDC4-201ENST00000299185 DDX27Q96GQ7 796 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-201ENST00000299185 LARP6Q9BRS8 491 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-201ENST00000299185 RTN4Q9NQC3 1192 aaKnown RBP9.11□□□□□ -0.95
DEPDC4-201ENST00000299185 KIF7Q2M1P5 1343 aa9.1□□□□□ -0.95
DEPDC4-201ENST00000299185 WBP1LQ9NX94 342 aa9.1□□□□□ -0.95
DEPDC4-201ENST00000299185 KIAA1468Q9P260 1216 aa9.1□□□□□ -0.95
DEPDC4-201ENST00000299185 MST1RQ04912 1400 aa9.1□□□□□ -0.95
DEPDC4-201ENST00000299185 PHF14O94880 888 aa9.09□□□□□ -0.95
DEPDC4-201ENST00000299185 CCDC7Q96M83 1385 aa9.09□□□□□ -0.95
DEPDC4-201ENST00000299185 SBNO2Q9Y2G9 1366 aa9.09□□□□□ -0.95
DEPDC4-201ENST00000299185 RGPD8O14715 1765 aaPredicted RBP9.09□□□□□ -0.95
DEPDC4-201ENST00000299185 WASHC2AQ641Q2 1341 aa9.08□□□□□ -0.96
DEPDC4-201ENST00000299185 TRAF7Q6Q0C0 670 aa9.08□□□□□ -0.96
DEPDC4-201ENST00000299185 CDK19Q9BWU1 502 aa9.08□□□□□ -0.96
DEPDC4-201ENST00000299185 MSH6P52701 1360 aa9.08□□□□□ -0.96
DEPDC4-201ENST00000299185 WASLO00401 505 aaPredicted RBP9.07□□□□□ -0.96
DEPDC4-201ENST00000299185 HSPA1LP34931 641 aa9.07□□□□□ -0.96
DEPDC4-201ENST00000299185 SRPK2P78362 688 aaKnown RBP9.07□□□□□ -0.96
DEPDC4-201ENST00000299185 TSR3Q9UJK0 312 aaKnown RBP9.07□□□□□ -0.96
DEPDC4-201ENST00000299185 C1orf167Q5SNV9 1468 aa9.07□□□□□ -0.96
DEPDC4-201ENST00000299185 GFRA3O60609 400 aa9.06□□□□□ -0.96
DEPDC4-201ENST00000299185 DDX17Q92841 729 aaKnown RBP9.06□□□□□ -0.96
DEPDC4-201ENST00000299185 SIRT1Q96EB6 747 aa9.06□□□□□ -0.96
DEPDC4-201ENST00000299185 EMILIN3Q9NT22 766 aa9.06□□□□□ -0.96
DEPDC4-201ENST00000299185 EVC2Q86UK5 1308 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 PPIP5K1Q6PFW1 1433 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 CD163L1Q9NR16 1453 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 TMF1P82094 1093 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 XPCQ01831 940 aaPredicted RBP9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 MFSD10Q14728 455 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 FAM98CQ17RN3 349 aaKnown RBP9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 ORAI2Q96SN7 254 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 DCCP43146 1447 aa9.05□□□□□ -0.96
DEPDC4-201ENST00000299185 ROBO1Q9Y6N7 1651 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 PMFBP1Q8TBY8 1022 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 NUDT16Q96DE0 195 aaKnown RBP9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 LRCH3Q96II8 777 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 EPAS1Q99814 870 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 ITSN1Q15811 1721 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 ANKARQ7Z5J8 1434 aa9.04□□□□□ -0.96
DEPDC4-201ENST00000299185 NRKQ7Z2Y5 1582 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 A0A1W2PP64 1363 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 ATF3P18847 181 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 PIP4K2BP78356 416 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 CNGB1Q14028 1251 aaPredicted RBP9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 C6orf132Q5T0Z8 1188 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 TMC1Q8TDI8 760 aa9.03□□□□□ -0.96
DEPDC4-201ENST00000299185 ATAD2Q6PL18 1390 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 AKAP12Q02952 1782 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 SLC12A5Q9H2X9 1139 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 C19orf44Q9H6X5 657 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 SEPT9Q9UHD8 586 aaPredicted RBP9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 HPS5Q9UPZ3 1129 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 NCOA3Q9Y6Q9 1424 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 MON2Q7Z3U7 1717 aa9.02□□□□□ -0.97
DEPDC4-201ENST00000299185 KIF1AQ12756 1690 aa9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 GTPBP6O43824 516 aaPredicted RBP9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 ESCO1Q5FWF5 840 aa9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 BRINP3Q76B58 766 aa9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 NSD3Q9BZ95 1437 aa9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 CABP1Q9NZU7 370 aa9.01□□□□□ -0.97
DEPDC4-201ENST00000299185 TRPM3Q9HCF6 1732 aaPredicted RBP9□□□□□ -0.97
DEPDC4-201ENST00000299185 DDX10Q13206 875 aaKnown RBP9□□□□□ -0.97
DEPDC4-201ENST00000299185 NHSL1Q5SYE7 1610 aa9□□□□□ -0.97
DEPDC4-201ENST00000299185 NRG2O14511 850 aaPredicted RBP8.99□□□□□ -0.97
DEPDC4-201ENST00000299185 CADPS2Q86UW7 1296 aa8.99□□□□□ -0.97
DEPDC4-201ENST00000299185 PXDNQ92626 1479 aa8.99□□□□□ -0.97
DEPDC4-201ENST00000299185 ACEP12821 1306 aa8.99□□□□□ -0.97
DEPDC4-201ENST00000299185 USP6P35125 1406 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 PIK3C2AO00443 1686 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 LCE2BO14633 110 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 TOM1O60784 492 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 PANK3Q9H999 370 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 SLAIN2Q9P270 581 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 COL16A1Q07092 1604 aaPredicted RBP8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 AHDC1Q5TGY3 1603 aaPredicted RBP8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 ANKRD36BQ8N2N9 1353 aa8.98□□□□□ -0.97
DEPDC4-201ENST00000299185 CPSF1Q10570 1443 aaKnown RBP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 MARF1Q9Y4F3 1742 aaKnown RBP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 KIF20BQ96Q89 1820 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 FOXO3O43524 673 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 PPP4CP60510 307 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 NUTM2GQ5VZR2 741 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 NME9Q86XW9 330 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 NGDNQ8NEJ9 315 aaKnown RBP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 CARD14Q9BXL6 1004 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 POLR3AO14802 1390 aaPredicted RBP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 KTN1Q86UP2 1357 aaKnown RBP8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 PHLPP1O60346 1717 aa8.97□□□□□ -0.97
DEPDC4-201ENST00000299185 PACS2Q86VP3 889 aa8.96□□□□□ -0.98
DEPDC4-201ENST00000299185 PRKD2Q9BZL6 878 aa8.96□□□□□ -0.98
DEPDC4-201ENST00000299185 V9GY48 417 aaPredicted RBP8.96□□□□□ -0.98
DEPDC4-201ENST00000299185 ALS2Q96Q42 1657 aa8.95□□□□□ -0.98
DEPDC4-201ENST00000299185 PLEKHG3A1L390 1219 aa8.95□□□□□ -0.98
DEPDC4-201ENST00000299185 RGS17Q9UGC6 210 aaPredicted RBP8.95□□□□□ -0.98
DEPDC4-201ENST00000299185 TNS3Q68CZ2 1445 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms