RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 KIF16BQ96L93 1317 aa11.69□□□□□ -0.54
PRDM9-201ENST00000296682 PTPRUQ92729 1446 aa11.69□□□□□ -0.54
PRDM9-201ENST00000296682 NWD1Q149M9 1564 aa11.69□□□□□ -0.54
PRDM9-201ENST00000296682 ADAMTS7Q9UKP4 1686 aa11.68□□□□□ -0.54
PRDM9-201ENST00000296682 VAMP4O75379 141 aa11.68□□□□□ -0.54
PRDM9-201ENST00000296682 ANKARQ7Z5J8 1434 aa11.67□□□□□ -0.54
PRDM9-201ENST00000296682 MAP3K19Q56UN5 1328 aa11.66□□□□□ -0.54
PRDM9-201ENST00000296682 FKBP5Q13451 457 aaPredicted RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 MST1RQ04912 1400 aa11.66□□□□□ -0.54
PRDM9-201ENST00000296682 STK31Q9BXU1 1019 aa11.66□□□□□ -0.54
PRDM9-201ENST00000296682 CRYBG1Q9Y4K1 1723 aa11.66□□□□□ -0.54
PRDM9-201ENST00000296682 FRAT2O75474 233 aaPredicted RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 GZF1Q9H116 711 aaPredicted RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 FAM208AQ9UK61 1670 aaKnown RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 MED1Q15648 1581 aaPredicted RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 CEP170BQ9Y4F5 1589 aaPredicted RBP11.66□□□□□ -0.54
PRDM9-201ENST00000296682 A0A0G2JS52 829 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 ZC3H6P61129 1189 aaKnown RBP11.65□□□□□ -0.54
PRDM9-201ENST00000296682 ANKLE2Q86XL3 938 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 SMARCA5O60264 1052 aaPredicted RBP11.65□□□□□ -0.54
PRDM9-201ENST00000296682 ZNF853P0CG23 659 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 NFKBIBQ15653 356 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 MTHFSDQ2M296 383 aaKnown RBP11.65□□□□□ -0.54
PRDM9-201ENST00000296682 TPRNQ4KMQ1 711 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 CFAP44Q96MT7 982 aa11.65□□□□□ -0.54
PRDM9-201ENST00000296682 KIF24Q5T7B8 1368 aa11.65□□□□□ -0.55
PRDM9-201ENST00000296682 PLEKHG3A1L390 1219 aa11.64□□□□□ -0.55
PRDM9-201ENST00000296682 CSB-PGBD3P0DP91 1061 aa11.64□□□□□ -0.55
PRDM9-201ENST00000296682 EYA1Q99502 592 aa11.64□□□□□ -0.55
PRDM9-201ENST00000296682 ANXA1P04083 346 aa11.64□□□□□ -0.55
PRDM9-201ENST00000296682 USP6P35125 1406 aa11.63□□□□□ -0.55
PRDM9-201ENST00000296682 LMO7Q8WWI1 1683 aa11.63□□□□□ -0.55
PRDM9-201ENST00000296682 HAP1P54257 671 aaPredicted RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 PROSER2Q86WR7 435 aaPredicted RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 IFT57Q9NWB7 429 aa11.63□□□□□ -0.55
PRDM9-201ENST00000296682 SIPA1L3O60292 1781 aaPredicted RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 C22orf23Q9BZE7 217 aa11.63□□□□□ -0.55
PRDM9-201ENST00000296682 API5Q9BZZ5 524 aaKnown RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 TRPM3Q9HCF6 1732 aaPredicted RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 C16orf71Q8IYS4 520 aaPredicted RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 MRPL50Q8N5N7 158 aaKnown RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 LRRC59Q96AG4 307 aaKnown RBP11.63□□□□□ -0.55
PRDM9-201ENST00000296682 ALDH1L2Q3SY69 923 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 DDX17Q92841 729 aaKnown RBP11.62□□□□□ -0.55
PRDM9-201ENST00000296682 USP19O94966 1318 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 LTN1O94822 1766 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 CHD1LQ86WJ1 897 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 ORAI2Q96SN7 254 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 ZBTB40Q9NUA8 1239 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 PHF8Q9UPP1 1060 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 KDM3BQ7LBC6 1761 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 NCAPD2Q15021 1401 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 G2E3Q7L622 706 aa11.62□□□□□ -0.55
PRDM9-201ENST00000296682 TSHZ3Q63HK5 1081 aa11.61□□□□□ -0.55
PRDM9-201ENST00000296682 NOL8Q76FK4 1167 aaKnown RBP11.61□□□□□ -0.55
PRDM9-201ENST00000296682 ABCC6O95255 1503 aa11.61□□□□□ -0.55
PRDM9-201ENST00000296682 KDRP35968 1356 aa11.61□□□□□ -0.55
PRDM9-201ENST00000296682 HSP90AB1P08238 724 aaKnown RBP11.61□□□□□ -0.55
PRDM9-201ENST00000296682 TEFQ10587 303 aa11.6□□□□□ -0.55
PRDM9-201ENST00000296682 MPRIPQ6WCQ1 1025 aa11.6□□□□□ -0.55
PRDM9-201ENST00000296682 HDAC1Q13547 482 aaPredicted RBP11.6□□□□□ -0.55
PRDM9-201ENST00000296682 MEIS3Q99687 375 aa11.6□□□□□ -0.55
PRDM9-201ENST00000296682 AIMP1Q12904 312 aaKnown RBP11.59□□□□□ -0.55
PRDM9-201ENST00000296682 EXOC6BQ9Y2D4 811 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 ARHGAP45Q92619 1136 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 NFAT5O94916 1531 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 HSCBQ8IWL3 235 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 CHMP4BQ9H444 224 aaKnown RBP11.59□□□□□ -0.55
PRDM9-201ENST00000296682 NLRP2Q9NX02 1062 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 TBX22Q9Y458 520 aa11.59□□□□□ -0.55
PRDM9-201ENST00000296682 TRIM6-TRIM34B2RNG4 842 aa11.58□□□□□ -0.55
PRDM9-201ENST00000296682 ZBTB7BO15156 539 aaPredicted RBP11.58□□□□□ -0.55
PRDM9-201ENST00000296682 OS9Q13438 667 aaPredicted RBP11.58□□□□□ -0.55
PRDM9-201ENST00000296682 CABLES1Q8TDN4 633 aa11.58□□□□□ -0.55
PRDM9-201ENST00000296682 ZNF330Q9Y3S2 320 aaPredicted RBP11.58□□□□□ -0.56
PRDM9-201ENST00000296682 RILPL2Q969X0 211 aa11.58□□□□□ -0.56
PRDM9-201ENST00000296682 RGS12O14924 1447 aa11.58□□□□□ -0.56
PRDM9-201ENST00000296682 HSPA2P54652 639 aa11.57□□□□□ -0.56
PRDM9-201ENST00000296682 OTUD7AQ8TE49 926 aaPredicted RBP11.57□□□□□ -0.56
PRDM9-201ENST00000296682 HDGFL1Q5TGJ6 251 aa11.57□□□□□ -0.56
PRDM9-201ENST00000296682 FOXD4L5Q5VV16 416 aaPredicted RBP11.57□□□□□ -0.56
PRDM9-201ENST00000296682 GAS2L2Q8NHY3 880 aa11.57□□□□□ -0.56
PRDM9-201ENST00000296682 FOXD4L4Q8WXT5 416 aaPredicted RBP11.57□□□□□ -0.56
PRDM9-201ENST00000296682 USP35Q9P2H5 1018 aa11.57□□□□□ -0.56
PRDM9-201ENST00000296682 GNAT3A8MTJ3 354 aa11.56□□□□□ -0.56
PRDM9-201ENST00000296682 ZNF530Q6P9A1 599 aaPredicted RBP11.56□□□□□ -0.56
PRDM9-201ENST00000296682 CCDC9Q9Y3X0 531 aaKnown RBP11.56□□□□□ -0.56
PRDM9-201ENST00000296682 SLIT3O75094 1523 aa11.56□□□□□ -0.56
PRDM9-201ENST00000296682 ARHGEF10O15013 1369 aa11.56□□□□□ -0.56
PRDM9-201ENST00000296682 IL1RAPL2Q9NP60 686 aa11.56□□□□□ -0.56
PRDM9-201ENST00000296682 SETD1BQ9UPS6 1966 aaKnown RBP11.55□□□□□ -0.56
PRDM9-201ENST00000296682 RBM42Q9BTD8 480 aaKnown RBP11.55□□□□□ -0.56
PRDM9-201ENST00000296682 TBC1D2Q9BYX2 928 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 KIAA0232Q92628 1395 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 KIF1AQ12756 1690 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 CRB1P82279 1406 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 MAP4K4O95819 1239 aaPredicted RBP11.55□□□□□ -0.56
PRDM9-201ENST00000296682 CHRNA2Q15822 529 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 C1orf141Q5JVX7 400 aa11.55□□□□□ -0.56
PRDM9-201ENST00000296682 LGR6Q9HBX8 967 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms