RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 CRB1P82279 1406 aa20.05■□□□□ 0.8
LSM6-201ENST00000296581 PDE3AQ14432 1141 aa20.05■□□□□ 0.8
LSM6-201ENST00000296581 LRRC37A3O60309 1634 aa20.05■□□□□ 0.8
LSM6-201ENST00000296581 CABLES1Q8TDN4 633 aa20.05■□□□□ 0.8
LSM6-201ENST00000296581 MCM10Q7L590 875 aa20.04■□□□□ 0.8
LSM6-201ENST00000296581 LRRC59Q96AG4 307 aaKnown RBP20.04■□□□□ 0.8
LSM6-201ENST00000296581 ZNF428Q96B54 188 aa20.04■□□□□ 0.8
LSM6-201ENST00000296581 CCDC136Q96JN2 1154 aa20.04■□□□□ 0.8
LSM6-201ENST00000296581 ERBB3P21860 1342 aa20.04■□□□□ 0.8
LSM6-201ENST00000296581 ABCA3Q99758 1704 aa20.03■□□□□ 0.8
LSM6-201ENST00000296581 FAM208AQ9UK61 1670 aaKnown RBP20.02■□□□□ 0.8
LSM6-201ENST00000296581 CHL1O00533 1208 aa20.02■□□□□ 0.8
LSM6-201ENST00000296581 RTF1Q92541 710 aaKnown RBP20.02■□□□□ 0.8
LSM6-201ENST00000296581 MAP3K5Q99683 1374 aa20.02■□□□□ 0.8
LSM6-201ENST00000296581 MSH5O43196 834 aa20.01■□□□□ 0.79
LSM6-201ENST00000296581 GNAT3A8MTJ3 354 aa20.01■□□□□ 0.79
LSM6-201ENST00000296581 ALDH1L2Q3SY69 923 aa20.01■□□□□ 0.79
LSM6-201ENST00000296581 SSH1Q8WYL5 1049 aa20.01■□□□□ 0.79
LSM6-201ENST00000296581 BCL2L13Q9BXK5 485 aa20.01■□□□□ 0.79
LSM6-201ENST00000296581 KIAA0232Q92628 1395 aa20■□□□□ 0.79
LSM6-201ENST00000296581 CANXP27824 592 aaKnown RBP20■□□□□ 0.79
LSM6-201ENST00000296581 VAMP4O75379 141 aa20■□□□□ 0.79
LSM6-201ENST00000296581 FRAT1Q92837 279 aaPredicted RBP19.99■□□□□ 0.79
LSM6-201ENST00000296581 SMC4Q9NTJ3 1288 aa19.99■□□□□ 0.79
LSM6-201ENST00000296581 ROBO1Q9Y6N7 1651 aa19.99■□□□□ 0.79
LSM6-201ENST00000296581 BRPF1P55201 1214 aaPredicted RBP19.97■□□□□ 0.79
LSM6-201ENST00000296581 AHDC1Q5TGY3 1603 aaPredicted RBP19.97■□□□□ 0.79
LSM6-201ENST00000296581 TSPYL6Q8N831 410 aa19.97■□□□□ 0.79
LSM6-201ENST00000296581 AMOTQ4VCS5 1084 aa19.96■□□□□ 0.79
LSM6-201ENST00000296581 ZKSCAN2Q63HK3 967 aa19.96■□□□□ 0.79
LSM6-201ENST00000296581 TWISTNBQ3B726 338 aaPredicted RBP19.96■□□□□ 0.79
LSM6-201ENST00000296581 PLEKHO1Q53GL0 409 aaPredicted RBP19.96■□□□□ 0.79
LSM6-201ENST00000296581 C8orf58Q8NAV2 365 aa19.96■□□□□ 0.79
LSM6-201ENST00000296581 CHRNA2Q15822 529 aa19.95■□□□□ 0.78
LSM6-201ENST00000296581 IL17REQ8NFR9 667 aa19.95■□□□□ 0.78
LSM6-201ENST00000296581 PANK1Q8TE04 598 aa19.95■□□□□ 0.78
LSM6-201ENST00000296581 KIF16BQ96L93 1317 aa19.94■□□□□ 0.78
LSM6-201ENST00000296581 CEMIPQ8WUJ3 1361 aa19.94■□□□□ 0.78
LSM6-201ENST00000296581 PLEKHG2Q9H7P9 1386 aa19.94■□□□□ 0.78
LSM6-201ENST00000296581 MS4A1P11836 297 aa19.93■□□□□ 0.78
LSM6-201ENST00000296581 BABAM1Q9NWV8 329 aa19.93■□□□□ 0.78
LSM6-201ENST00000296581 RLBP1P12271 317 aa19.92■□□□□ 0.78
LSM6-201ENST00000296581 AKAP4Q5JQC9 854 aa19.92■□□□□ 0.78
LSM6-201ENST00000296581 TNNQ9UQP3 1299 aa19.92■□□□□ 0.78
LSM6-201ENST00000296581 NLRP2Q9NX02 1062 aa19.92■□□□□ 0.78
LSM6-201ENST00000296581 HAP1P54257 671 aaPredicted RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 ZNF530Q6P9A1 599 aaPredicted RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 ATF7IPQ6VMQ6 1270 aa19.91■□□□□ 0.78
LSM6-201ENST00000296581 MRPL50Q8N5N7 158 aaKnown RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 PRDM11Q9NQV5 511 aa19.91■□□□□ 0.78
LSM6-201ENST00000296581 NOB1Q9ULX3 412 aaKnown RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 COG6Q9Y2V7 657 aa19.91■□□□□ 0.78
LSM6-201ENST00000296581 VIRMAQ69YN4 1812 aaKnown RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 ELL2O00472 640 aaPredicted RBP19.91■□□□□ 0.78
LSM6-201ENST00000296581 TSPYL4Q9UJ04 414 aa19.91■□□□□ 0.78
LSM6-201ENST00000296581 OVOS2A0A0G2JMS6 1433 aa19.9■□□□□ 0.78
LSM6-201ENST00000296581 COL22A1Q8NFW1 1626 aaPredicted RBP19.9■□□□□ 0.78
LSM6-201ENST00000296581 IPO8O15397 1037 aaKnown RBP19.9■□□□□ 0.78
LSM6-201ENST00000296581 TRIM27P14373 513 aa19.9■□□□□ 0.78
LSM6-201ENST00000296581 DZIP1LQ8IYY4 767 aaKnown RBP19.9■□□□□ 0.78
LSM6-201ENST00000296581 ADAMTS7Q9UKP4 1686 aa19.9■□□□□ 0.78
LSM6-201ENST00000296581 CSB-PGBD3P0DP91 1061 aa19.9■□□□□ 0.78
LSM6-201ENST00000296581 AAMPQ13685 434 aa19.9■□□□□ 0.78
LSM6-201ENST00000296581 TAF7Q15545 349 aaPredicted RBP19.89■□□□□ 0.77
LSM6-201ENST00000296581 MIS18AQ9NYP9 233 aa19.89■□□□□ 0.77
LSM6-201ENST00000296581 COL5A2P05997 1499 aaPredicted RBP19.88■□□□□ 0.77
LSM6-201ENST00000296581 KRT24Q2M2I5 525 aa19.88■□□□□ 0.77
LSM6-201ENST00000296581 RAPGEF4Q8WZA2 1011 aa19.88■□□□□ 0.77
LSM6-201ENST00000296581 ARHGAP45Q92619 1136 aa19.88■□□□□ 0.77
LSM6-201ENST00000296581 MEGF6O75095 1541 aa19.88■□□□□ 0.77
LSM6-201ENST00000296581 CLUAP1Q96AJ1 413 aa19.87■□□□□ 0.77
LSM6-201ENST00000296581 WDR17Q8IZU2 1322 aa19.87■□□□□ 0.77
LSM6-201ENST00000296581 PKD1L3Q7Z443 1732 aa19.87■□□□□ 0.77
LSM6-201ENST00000296581 MVPQ14764 893 aaKnown RBP19.87■□□□□ 0.77
LSM6-201ENST00000296581 C1orf141Q5JVX7 400 aa19.87■□□□□ 0.77
LSM6-201ENST00000296581 FTSJ3Q8IY81 847 aaKnown RBP19.87■□□□□ 0.77
LSM6-201ENST00000296581 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.87■□□□□ 0.774e-7■■■□□ 17.4
LSM6-201ENST00000296581 KDM3BQ7LBC6 1761 aa19.86■□□□□ 0.77
LSM6-201ENST00000296581 TATP17735 454 aaPredicted RBP19.86■□□□□ 0.77
LSM6-201ENST00000296581 LGR6Q9HBX8 967 aa19.86■□□□□ 0.77
LSM6-201ENST00000296581 DEKP35659 375 aaKnown RBP19.86■□□□□ 0.77
LSM6-201ENST00000296581 KDM2BQ8NHM5 1336 aa19.85■□□□□ 0.77
LSM6-201ENST00000296581 SOS1Q07889 1333 aaPredicted RBP19.84■□□□□ 0.77
LSM6-201ENST00000296581 RNMTO43148 476 aaKnown RBP19.84■□□□□ 0.77
LSM6-201ENST00000296581 SIPA1L3O60292 1781 aaPredicted RBP19.84■□□□□ 0.77
LSM6-201ENST00000296581 COL16A1Q07092 1604 aaPredicted RBP19.84■□□□□ 0.77
LSM6-201ENST00000296581 PHLPP1O60346 1717 aa19.83■□□□□ 0.77
LSM6-201ENST00000296581 PARP4Q9UKK3 1724 aaKnown RBP19.83■□□□□ 0.76
LSM6-201ENST00000296581 MPRIPQ6WCQ1 1025 aa19.83■□□□□ 0.76
LSM6-201ENST00000296581 SPG7Q9UQ90 795 aa19.83■□□□□ 0.76
LSM6-201ENST00000296581 SCN11AQ9UI33 1791 aa19.82■□□□□ 0.76
LSM6-201ENST00000296581 TCERG1O14776 1098 aaKnown RBP19.82■□□□□ 0.76
LSM6-201ENST00000296581 CENPQQ7L2Z9 268 aaPredicted RBP19.81■□□□□ 0.76
LSM6-201ENST00000296581 DDX19BQ9UMR2 479 aa19.81■□□□□ 0.76
LSM6-201ENST00000296581 COL14A1Q05707 1796 aaKnown RBP19.81■□□□□ 0.76
LSM6-201ENST00000296581 TEFQ10587 303 aa19.81■□□□□ 0.76
LSM6-201ENST00000296581 TMEM57Q8N5G2 664 aa19.81■□□□□ 0.76
LSM6-201ENST00000296581 TOM1O60784 492 aa19.8■□□□□ 0.76
LSM6-201ENST00000296581 TOM1L2Q6ZVM7 507 aa19.79■□□□□ 0.76
LSM6-201ENST00000296581 CARD10Q9BWT7 1032 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms