RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 NFKBIBQ15653 356 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 GCOM1H8Y6P7 765 aaPredicted RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 MYZAPP0CAP1 466 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 ANKRD50Q9ULJ7 1429 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 GAPVD1Q14C86 1478 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 KIF2AO00139 706 aaPredicted RBP10.91□□□□□ -0.66
CUX1-201ENST00000292535 FAM193AP78312 1265 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 TSG101Q99816 390 aa10.91□□□□□ -0.66
CUX1-201ENST00000292535 HOMER2Q9NSB8 354 aa10.9□□□□□ -0.66
CUX1-201ENST00000292535 MAP1BP46821 2468 aaKnown RBP10.9□□□□□ -0.66
CUX1-201ENST00000292535 ZSCAN29Q8IWY8 852 aaPredicted RBP10.9□□□□□ -0.66
CUX1-201ENST00000292535 FANCD2Q9BXW9 1451 aa10.9□□□□□ -0.66
CUX1-201ENST00000292535 GGNBP2Q9H3C7 697 aa10.9□□□□□ -0.66
CUX1-201ENST00000292535 PRPF40AO75400 957 aaKnown RBP10.9□□□□□ -0.67
CUX1-201ENST00000292535 CETN1Q12798 172 aa10.9□□□□□ -0.67
CUX1-201ENST00000292535 SLC4A2P04920 1241 aa10.9□□□□□ -0.67
CUX1-201ENST00000292535 ZNF530Q6P9A1 599 aaPredicted RBP10.9□□□□□ -0.67
CUX1-201ENST00000292535 LRP2BPQ9P2M1 347 aa10.9□□□□□ -0.67
CUX1-201ENST00000292535 CNTRLQ7Z7A1 2325 aa10.9□□□□□ -0.67
CUX1-201ENST00000292535 TRAK2O60296 914 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 MPHOSPH6Q99547 160 aaKnown RBP10.89□□□□□ -0.67
CUX1-201ENST00000292535 EHMT1Q9H9B1 1298 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 PPM1FP49593 454 aaPredicted RBP10.89□□□□□ -0.67
CUX1-201ENST00000292535 WDR63Q8IWG1 891 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 TOM1L2Q6ZVM7 507 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 ZNF428Q96B54 188 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 AIDAQ96BJ3 306 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 RAI14Q9P0K7 980 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 MAP2K1Q02750 393 aaPredicted RBP10.89□□□□□ -0.67
CUX1-201ENST00000292535 TXNDC2Q86VQ3 553 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 SCLT1Q96NL6 688 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 UPF3BQ9BZI7 483 aaKnown RBP10.89□□□□□ -0.67
CUX1-201ENST00000292535 CEP126Q9P2H0 1117 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 USP5P45974 858 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 ZNF652Q9Y2D9 606 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 NOB1Q9ULX3 412 aaKnown RBP10.89□□□□□ -0.67
CUX1-201ENST00000292535 FERP16591 822 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 PLEKHH2Q8IVE3 1493 aa10.89□□□□□ -0.67
CUX1-201ENST00000292535 STARD3NLO95772 234 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 FKBP4Q02790 459 aaKnown RBP eCLIP10.88□□□□□ -0.67
CUX1-201ENST00000292535 CAVIN4Q5BKX8 364 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 DRC1Q96MC2 740 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 CTAGE5O15320 804 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 PRKAR2BP31323 418 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 SPC24Q8NBT2 197 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 STK3Q13188 491 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 LUZP1Q86V48 1076 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 BLOC1S2Q6QNY1 142 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 CCDC196A0A1B0GTZ2 297 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 GSTTP1A0A1W2PQM5 241 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 ANKRD18BA2A2Z9 1011 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 TAOK3Q9H2K8 898 aa10.88□□□□□ -0.67
CUX1-201ENST00000292535 PABPN1LA6NDY0 278 aaKnown RBP10.87□□□□□ -0.67
CUX1-201ENST00000292535 AKAP2Q9Y2D5 859 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 CEP63Q96MT8 703 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 TTC21AQ8NDW8 1320 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 MICALCLQ6ZW33 695 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 SIL1Q9H173 461 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 SPDYE4A6NLX3 237 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 STXBP4Q6ZWJ1 553 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 TCP11L2Q8N4U5 519 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 ALS2CR12Q96Q35 445 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 ATF7IPQ6VMQ6 1270 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 PDRG1Q9NUG6 133 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 CRACR2BQ8N4Y2 399 aaPredicted RBP10.87□□□□□ -0.67
CUX1-201ENST00000292535 ZNF692Q9BU19 519 aaPredicted RBP10.87□□□□□ -0.67
CUX1-201ENST00000292535 TMEM266Q2M3C6 531 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 CCDC102AQ96A19 550 aa10.87□□□□□ -0.67
CUX1-201ENST00000292535 A0A087WZG4 1122 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 ZPR1O75312 459 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 FKBP15Q5T1M5 1219 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 UBXN4Q92575 508 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 ACTN2P35609 894 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 STK11IPQ8N1F8 1099 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 CIZ1Q9ULV3 898 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 BTBD11A6QL63 1104 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 MYL6BP14649 208 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 CTNNBL1Q8WYA6 563 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 K7ELQ4 463 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 SFPQP23246 707 aaKnown RBP eCLIP10.86□□□□□ -0.671e-6■■■■□ 21.6
CUX1-201ENST00000292535 PROSER2Q86WR7 435 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 SH2B1Q9NRF2 756 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 DZIP1Q86YF9 867 aaKnown RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 JAKMIP1Q96N16 626 aaKnown RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 ATRXP46100 2492 aa10.86□□□□□ -0.67
CUX1-201ENST00000292535 BBXQ8WY36 941 aaPredicted RBP10.86□□□□□ -0.67
CUX1-201ENST00000292535 NUP62CLQ9H1M0 184 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 SMARCA4P51532 1647 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 GBP3Q9H0R5 595 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 CCDC12Q8WUD4 166 aaPredicted RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 FAM107BQ9H098 131 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 KIF21BO75037 1637 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 PDE4DIPQ5VU43 2346 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 SMC1AQ14683 1233 aaKnown RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 SETD1BQ9UPS6 1966 aaKnown RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 HFM1A2PYH4 1435 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 CFAP65Q6ZU64 1925 aaKnown RBP10.85□□□□□ -0.67
CUX1-201ENST00000292535 PLEKHH1Q9ULM0 1364 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 POGZQ7Z3K3 1410 aa10.85□□□□□ -0.67
CUX1-201ENST00000292535 ANKIB1Q9P2G1 1089 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms