RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 SHANK3Q9BYB0 1731 aa18.05■□□□□ 0.48
VPS28-201ENST00000292510 COL3A1P02461 1466 aaPredicted RBP18.05■□□□□ 0.48
VPS28-201ENST00000292510 PARD3Q8TEW0 1356 aa18.04■□□□□ 0.48
VPS28-201ENST00000292510 RGPD1P0DJD0 1748 aa18.04■□□□□ 0.48
VPS28-201ENST00000292510 TNS1Q9HBL0 1735 aaKnown RBP18.04■□□□□ 0.48
VPS28-201ENST00000292510 DIAPH1O60610 1272 aaKnown RBP18.04■□□□□ 0.48
VPS28-201ENST00000292510 ACSBG1Q96GR2 724 aa18.04■□□□□ 0.48
VPS28-201ENST00000292510 SULT6B1Q6IMI4 303 aa18.03■□□□□ 0.48
VPS28-201ENST00000292510 BCL9O00512 1426 aa18.03■□□□□ 0.48
VPS28-201ENST00000292510 KCNQ2O43526 872 aa18.02■□□□□ 0.48
VPS28-201ENST00000292510 APBA3O96018 575 aa18.02■□□□□ 0.48
VPS28-201ENST00000292510 BAG6P46379 1132 aa18.02■□□□□ 0.48
VPS28-201ENST00000292510 EN1Q05925 392 aaPredicted RBP18.02■□□□□ 0.48
VPS28-201ENST00000292510 SBF2Q86WG5 1849 aa18.02■□□□□ 0.47
VPS28-201ENST00000292510 HMOX1P09601 288 aa18.01■□□□□ 0.47
VPS28-201ENST00000292510 PCDH11XQ9BZA7 1347 aa18■□□□□ 0.47
VPS28-201ENST00000292510 PCDH11YQ9BZA8 1340 aa18■□□□□ 0.47
VPS28-201ENST00000292510 CYP27B1O15528 508 aa18■□□□□ 0.47
VPS28-201ENST00000292510 BCL11BQ9C0K0 894 aaPredicted RBP18■□□□□ 0.47
VPS28-201ENST00000292510 PKD1L3Q7Z443 1732 aa18■□□□□ 0.47
VPS28-201ENST00000292510 U2SURPO15042 1029 aaKnown RBP17.99■□□□□ 0.47
VPS28-201ENST00000292510 CFAP53Q96M91 514 aa17.99■□□□□ 0.47
VPS28-201ENST00000292510 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
VPS28-201ENST00000292510 KDRP35968 1356 aa17.99■□□□□ 0.47
VPS28-201ENST00000292510 RALBP1Q15311 655 aa17.98■□□□□ 0.47
VPS28-201ENST00000292510 EZH2Q15910 746 aaKnown RBP17.98■□□□□ 0.47
VPS28-201ENST00000292510 NHSQ6T4R5 1651 aa17.97■□□□□ 0.47
VPS28-201ENST00000292510 CAMKK2Q96RR4 588 aa17.97■□□□□ 0.47
VPS28-201ENST00000292510 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.97■□□□□ 0.47
VPS28-201ENST00000292510 PRIM1P49642 420 aaKnown RBP17.96■□□□□ 0.47
VPS28-201ENST00000292510 SYTL4Q96C24 671 aaPredicted RBP17.96■□□□□ 0.47
VPS28-201ENST00000292510 DOT1LQ8TEK3 1739 aa17.95■□□□□ 0.46
VPS28-201ENST00000292510 PLEKHO1Q53GL0 409 aaPredicted RBP17.95■□□□□ 0.46
VPS28-201ENST00000292510 KAT6BQ8WYB5 2073 aa17.94■□□□□ 0.46
VPS28-201ENST00000292510 PHKG2P15735 406 aa17.94■□□□□ 0.46
VPS28-201ENST00000292510 PLEKHG2Q9H7P9 1386 aa17.93■□□□□ 0.46
VPS28-201ENST00000292510 ZNF530Q6P9A1 599 aaPredicted RBP17.93■□□□□ 0.46
VPS28-201ENST00000292510 IFNL2Q8IZJ0 200 aa17.93■□□□□ 0.46
VPS28-201ENST00000292510 PRKRIP1Q9H875 184 aaPredicted RBP17.93■□□□□ 0.46
VPS28-201ENST00000292510 AMOTQ4VCS5 1084 aa17.92■□□□□ 0.46
VPS28-201ENST00000292510 NUDCQ9Y266 331 aa17.92■□□□□ 0.46
VPS28-201ENST00000292510 MYBBP1AQ9BQG0 1328 aaKnown RBP17.92■□□□□ 0.46
VPS28-201ENST00000292510 U2AF1L5P0DN76 240 aaPredicted RBP17.91■□□□□ 0.46
VPS28-201ENST00000292510 U2AF1Q01081 240 aaKnown RBP eCLIP17.91■□□□□ 0.46
VPS28-201ENST00000292510 NKX1-1Q15270 411 aaPredicted RBP17.91■□□□□ 0.46
VPS28-201ENST00000292510 TOGARAM1Q9Y4F4 1720 aa17.91■□□□□ 0.46
VPS28-201ENST00000292510 BTAF1O14981 1849 aa17.91■□□□□ 0.46
VPS28-201ENST00000292510 PLSCR1O15162 318 aa17.9■□□□□ 0.46
VPS28-201ENST00000292510 MPRIPQ6WCQ1 1025 aa17.89■□□□□ 0.45
VPS28-201ENST00000292510 PROM2Q8N271 834 aa17.89■□□□□ 0.45
VPS28-201ENST00000292510 RSPH6AQ9H0K4 717 aa17.89■□□□□ 0.45
VPS28-201ENST00000292510 RREB1Q92766 1687 aa17.88■□□□□ 0.45
VPS28-201ENST00000292510 PRKAR2BP31323 418 aa17.88■□□□□ 0.45
VPS28-201ENST00000292510 MTHFSDQ2M296 383 aaKnown RBP17.88■□□□□ 0.45
VPS28-201ENST00000292510 TXNRD1Q16881 649 aa17.87■□□□□ 0.45
VPS28-201ENST00000292510 C1orf141Q5JVX7 400 aa17.87■□□□□ 0.45
VPS28-201ENST00000292510 KDM6AO15550 1401 aaPredicted RBP17.87■□□□□ 0.45
VPS28-201ENST00000292510 PHACTR3Q96KR7 559 aa17.86■□□□□ 0.45
VPS28-201ENST00000292510 RGPD3A6NKT7 1758 aaPredicted RBP17.86■□□□□ 0.45
VPS28-201ENST00000292510 RGPD4Q7Z3J3 1758 aa17.86■□□□□ 0.45
VPS28-201ENST00000292510 HSP90AB1P08238 724 aaKnown RBP17.85■□□□□ 0.45
VPS28-201ENST00000292510 NUP188Q5SRE5 1749 aa17.85■□□□□ 0.45
VPS28-201ENST00000292510 PIGBQ92521 554 aa17.85■□□□□ 0.45
VPS28-201ENST00000292510 DCAF5Q96JK2 942 aa17.85■□□□□ 0.45
VPS28-201ENST00000292510 FCHSD2O94868 740 aa17.84■□□□□ 0.45
VPS28-201ENST00000292510 AKAP4Q5JQC9 854 aa17.84■□□□□ 0.45
VPS28-201ENST00000292510 ITGB4P16144 1822 aa17.84■□□□□ 0.45
VPS28-201ENST00000292510 PSDA5PKW4 1024 aaPredicted RBP17.83■□□□□ 0.44
VPS28-201ENST00000292510 KCNQ4P56696 695 aa17.83■□□□□ 0.44
VPS28-201ENST00000292510 TMOD3Q9NYL9 352 aa17.83■□□□□ 0.44
VPS28-201ENST00000292510 LGR6Q9HBX8 967 aa17.82■□□□□ 0.44
VPS28-201ENST00000292510 ANO8Q9HCE9 1232 aaPredicted RBP17.82■□□□□ 0.44
VPS28-201ENST00000292510 LRRC4BQ9NT99 713 aa17.82■□□□□ 0.44
VPS28-201ENST00000292510 ERVV-2B6SEH9 535 aa17.81■□□□□ 0.44
VPS28-201ENST00000292510 CABP4P57796 275 aa17.81■□□□□ 0.44
VPS28-201ENST00000292510 R3HDM1Q15032 1099 aaKnown RBP17.81■□□□□ 0.44
VPS28-201ENST00000292510 PALLDQ8WX93 1383 aa17.8■□□□□ 0.44
VPS28-201ENST00000292510 SRCAPQ6ZRS2 3230 aa17.8■□□□□ 0.44
VPS28-201ENST00000292510 RNMTO43148 476 aaKnown RBP17.8■□□□□ 0.44
VPS28-201ENST00000292510 ANP32CO43423 234 aa17.8■□□□□ 0.44
VPS28-201ENST00000292510 GAS2L2Q8NHY3 880 aa17.8■□□□□ 0.44
VPS28-201ENST00000292510 ASAP1Q9ULH1 1129 aa17.8■□□□□ 0.44
VPS28-201ENST00000292510 CCDC184Q52MB2 194 aa17.79■□□□□ 0.44
VPS28-201ENST00000292510 NBPF14Q5TI25 921 aa17.79■□□□□ 0.44
VPS28-201ENST00000292510 MAP3K5Q99683 1374 aa17.79■□□□□ 0.44
VPS28-201ENST00000292510 NFATC2IPQ8NCF5 419 aa17.78■□□□□ 0.44
VPS28-201ENST00000292510 PLEKHF1Q96S99 279 aa17.78■□□□□ 0.44
VPS28-201ENST00000292510 CCNL1Q9UK58 526 aaPredicted RBP17.78■□□□□ 0.44
VPS28-201ENST00000292510 LY75O60449 1722 aa17.78■□□□□ 0.44
VPS28-201ENST00000292510 SCN11AQ9UI33 1791 aa17.77■□□□□ 0.44
VPS28-201ENST00000292510 GNAT3A8MTJ3 354 aa17.77■□□□□ 0.44
VPS28-201ENST00000292510 SLC27A3Q5K4L6 730 aa17.77■□□□□ 0.44
VPS28-201ENST00000292510 ATG3Q9NT62 314 aa17.77■□□□□ 0.44
VPS28-201ENST00000292510 IL17REQ8NFR9 667 aa17.76■□□□□ 0.43
VPS28-201ENST00000292510 SMARCC1Q92922 1105 aaPredicted RBP17.76■□□□□ 0.43
VPS28-201ENST00000292510 SLC52A2Q9HAB3 445 aa17.76■□□□□ 0.43
VPS28-201ENST00000292510 PAPPAQ13219 1627 aa17.76■□□□□ 0.43
VPS28-201ENST00000292510 WDR43Q15061 677 aaKnown RBP eCLIP17.75■□□□□ 0.43
VPS28-201ENST00000292510 ZNF827Q17R98 1081 aa17.75■□□□□ 0.43
VPS28-201ENST00000292510 ADAMTS7Q9UKP4 1686 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms