RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 CCDC125Q86Z20 511 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 MIER1Q8N108 512 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 BCL9O00512 1426 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 NCAPD2Q15021 1401 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 NSD2O96028 1365 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 NPC1L1Q9UHC9 1359 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 WNK3Q9BYP7 1800 aa12.63□□□□□ -0.39
HMGN1-201ENST00000288344 ZBTB7CA1YPR0 619 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 PRKAR2AP13861 404 aaKnown RBP12.62□□□□□ -0.39
HMGN1-201ENST00000288344 FAM182BQ5T319 152 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 NBPF6Q5VWK0 638 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 PLCD3Q8N3E9 789 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 NBPF4Q96M43 638 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 POLR3GLQ9BT43 218 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 EMILIN1Q9Y6C2 1016 aa12.62□□□□□ -0.39
HMGN1-201ENST00000288344 FAM208AQ9UK61 1670 aaKnown RBP12.62□□□□□ -0.39
HMGN1-201ENST00000288344 CDCA7Q9BWT1 371 aaPredicted RBP12.62□□□□□ -0.39
HMGN1-201ENST00000288344 RGPD2P0DJD1 1756 aa12.61□□□□□ -0.39
HMGN1-201ENST00000288344 MARCH10Q8NA82 808 aaPredicted RBP12.61□□□□□ -0.39
HMGN1-201ENST00000288344 SMG6Q86US8 1419 aaKnown RBP12.6□□□□□ -0.39
HMGN1-201ENST00000288344 LRRC37A3O60309 1634 aa12.6□□□□□ -0.39
HMGN1-201ENST00000288344 FLT4P35916 1363 aa12.6□□□□□ -0.39
HMGN1-201ENST00000288344 AMPHP49418 695 aa12.6□□□□□ -0.39
HMGN1-201ENST00000288344 FAM196AQ6ZSG2 479 aa12.59□□□□□ -0.39
HMGN1-201ENST00000288344 KNSTRNQ9Y448 316 aa12.59□□□□□ -0.39
HMGN1-201ENST00000288344 SBF2Q86WG5 1849 aa12.58□□□□□ -0.4
HMGN1-201ENST00000288344 PLCB2Q00722 1185 aa12.58□□□□□ -0.4
HMGN1-201ENST00000288344 NLRP2Q9NX02 1062 aa12.58□□□□□ -0.4
HMGN1-201ENST00000288344 CSB-PGBD3P0DP91 1061 aa12.57□□□□□ -0.4
HMGN1-201ENST00000288344 IL2RBP14784 551 aa12.57□□□□□ -0.4
HMGN1-201ENST00000288344 DDB1Q16531 1140 aa12.57□□□□□ -0.4
HMGN1-201ENST00000288344 PTF1AQ7RTS3 328 aa12.57□□□□□ -0.4
HMGN1-201ENST00000288344 EXOC5O00471 708 aa12.56□□□□□ -0.4
HMGN1-201ENST00000288344 PDE3BQ13370 1112 aa12.56□□□□□ -0.4
HMGN1-201ENST00000288344 CHADLQ6NUI6 762 aa12.56□□□□□ -0.4
HMGN1-201ENST00000288344 LTV1Q96GA3 475 aaPredicted RBP12.56□□□□□ -0.4
HMGN1-201ENST00000288344 EYA1Q99502 592 aa12.56□□□□□ -0.4
HMGN1-201ENST00000288344 TNS1Q9HBL0 1735 aaKnown RBP12.55□□□□□ -0.4
HMGN1-201ENST00000288344 EIF4A2Q14240 407 aaKnown RBP12.55□□□□□ -0.4
HMGN1-201ENST00000288344 DEFB132Q7Z7B7 95 aa12.55□□□□□ -0.4
HMGN1-201ENST00000288344 MORC1Q86VD1 984 aa12.55□□□□□ -0.4
HMGN1-201ENST00000288344 SHANK3Q9BYB0 1731 aa12.55□□□□□ -0.4
HMGN1-201ENST00000288344 TNS2Q63HR2 1409 aa12.54□□□□□ -0.4
HMGN1-201ENST00000288344 MEGF6O75095 1541 aa12.54□□□□□ -0.4
HMGN1-201ENST00000288344 CAMKK2Q96RR4 588 aa12.54□□□□□ -0.4
HMGN1-201ENST00000288344 OVOS2A0A0G2JMS6 1433 aa12.54□□□□□ -0.4
HMGN1-201ENST00000288344 A0A0G2JS52 829 aa12.53□□□□□ -0.4
HMGN1-201ENST00000288344 TRIM37O94972 964 aa12.53□□□□□ -0.4
HMGN1-201ENST00000288344 IL13P35225 146 aa12.53□□□□□ -0.4
HMGN1-201ENST00000288344 TNNT2P45379 298 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-201ENST00000288344 MYT1Q01538 1121 aa12.53□□□□□ -0.4
HMGN1-201ENST00000288344 ECM2O94769 699 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-201ENST00000288344 USHBP1Q8N6Y0 703 aa12.52□□□□□ -0.41
HMGN1-201ENST00000288344 IGSF1Q8N6C5 1336 aa12.52□□□□□ -0.41
HMGN1-201ENST00000288344 RGPD1P0DJD0 1748 aa12.51□□□□□ -0.41
HMGN1-201ENST00000288344 MTHFSP49914 203 aa12.51□□□□□ -0.41
HMGN1-201ENST00000288344 BCL11BQ9C0K0 894 aaPredicted RBP12.51□□□□□ -0.41
HMGN1-201ENST00000288344 PLSCR1O15162 318 aa12.5□□□□□ -0.41
HMGN1-201ENST00000288344 PPM1GO15355 546 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-201ENST00000288344 KCNQ2O43526 872 aa12.5□□□□□ -0.41
HMGN1-201ENST00000288344 ZEB1P37275 1124 aaPredicted RBP12.5□□□□□ -0.41
HMGN1-201ENST00000288344 CC2D1BQ5T0F9 858 aaKnown RBP12.5□□□□□ -0.41
HMGN1-201ENST00000288344 ZCRB1Q8TBF4 217 aaKnown RBP12.5□□□□□ -0.41
HMGN1-201ENST00000288344 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.5□□□□□ -0.418e-8■■□□□ 13
HMGN1-201ENST00000288344 COL3A1P02461 1466 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-201ENST00000288344 KDRP35968 1356 aa12.49□□□□□ -0.41
HMGN1-201ENST00000288344 PLEKHG2Q9H7P9 1386 aa12.49□□□□□ -0.41
HMGN1-201ENST00000288344 CYP27B1O15528 508 aa12.49□□□□□ -0.41
HMGN1-201ENST00000288344 EN1Q05925 392 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-201ENST00000288344 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
HMGN1-201ENST00000288344 PKD1L3Q7Z443 1732 aa12.48□□□□□ -0.41
HMGN1-201ENST00000288344 EZH2Q15910 746 aaKnown RBP12.47□□□□□ -0.41
HMGN1-201ENST00000288344 RGL2O15211 777 aa12.46□□□□□ -0.41
HMGN1-201ENST00000288344 APBA3O96018 575 aa12.46□□□□□ -0.41
HMGN1-201ENST00000288344 BAG6P46379 1132 aa12.46□□□□□ -0.41
HMGN1-201ENST00000288344 CREBZFQ9NS37 354 aa12.46□□□□□ -0.41
HMGN1-201ENST00000288344 NHSQ6T4R5 1651 aa12.46□□□□□ -0.41
HMGN1-201ENST00000288344 PARD3Q8TEW0 1356 aa12.46□□□□□ -0.42
HMGN1-201ENST00000288344 TATP17735 454 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-201ENST00000288344 PPP2R1AP30153 589 aa12.45□□□□□ -0.42
HMGN1-201ENST00000288344 AEBP1Q8IUX7 1158 aa12.45□□□□□ -0.42
HMGN1-201ENST00000288344 DDX54Q8TDD1 881 aaKnown RBP12.45□□□□□ -0.42
HMGN1-201ENST00000288344 RAPGEF4Q8WZA2 1011 aa12.45□□□□□ -0.42
HMGN1-201ENST00000288344 RGPD3A6NKT7 1758 aaPredicted RBP12.45□□□□□ -0.42
HMGN1-201ENST00000288344 RGPD4Q7Z3J3 1758 aa12.45□□□□□ -0.42
HMGN1-201ENST00000288344 RREB1Q92766 1687 aa12.44□□□□□ -0.42
HMGN1-201ENST00000288344 HAX1O00165 279 aa12.43□□□□□ -0.42
HMGN1-201ENST00000288344 DDX10Q13206 875 aaKnown RBP12.43□□□□□ -0.42
HMGN1-201ENST00000288344 SF3B2Q13435 895 aaKnown RBP12.43□□□□□ -0.42
HMGN1-201ENST00000288344 PRIM1P49642 420 aaKnown RBP12.42□□□□□ -0.42
HMGN1-201ENST00000288344 ACSBG1Q96GR2 724 aa12.42□□□□□ -0.42
HMGN1-201ENST00000288344 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-201ENST00000288344 BTAF1O14981 1849 aa12.42□□□□□ -0.42
HMGN1-201ENST00000288344 PHKG2P15735 406 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 SULT6B1Q6IMI4 303 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 TOGARAM1Q9Y4F4 1720 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 KAT6BQ8WYB5 2073 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 PCDH11XQ9BZA7 1347 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 PCDH11YQ9BZA8 1340 aa12.41□□□□□ -0.42
HMGN1-201ENST00000288344 NUP188Q5SRE5 1749 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms