RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CCT4P50991 539 aaKnown RBP20.11■□□□□ 0.81
CTCF-201ENST00000264010 GNAT3A8MTJ3 354 aa20.11■□□□□ 0.81
CTCF-201ENST00000264010 PTPRCP08575 1304 aa20.11■□□□□ 0.81
CTCF-201ENST00000264010 PTMAP06454 111 aaKnown RBP20.1■□□□□ 0.81
CTCF-201ENST00000264010 KCNA6P17658 529 aa20.1■□□□□ 0.81
CTCF-201ENST00000264010 ZBTB7BO15156 539 aaPredicted RBP20.09■□□□□ 0.81
CTCF-201ENST00000264010 C1orf141Q5JVX7 400 aa20.09■□□□□ 0.81
CTCF-201ENST00000264010 CHMP5Q9NZZ3 219 aa20.09■□□□□ 0.81
CTCF-201ENST00000264010 FRAT2O75474 233 aaPredicted RBP20.09■□□□□ 0.81
CTCF-201ENST00000264010 BRPF1P55201 1214 aaPredicted RBP20.09■□□□□ 0.81
CTCF-201ENST00000264010 FAM13BQ9NYF5 915 aa20.09■□□□□ 0.81
CTCF-201ENST00000264010 OS9Q13438 667 aaPredicted RBP20.09■□□□□ 0.81
CTCF-201ENST00000264010 GNAI3P08754 354 aa20.08■□□□□ 0.81
CTCF-201ENST00000264010 SHPRHQ149N8 1683 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 EIF2S2P20042 333 aaKnown RBP20.07■□□□□ 0.8
CTCF-201ENST00000264010 COL3A1P02461 1466 aaPredicted RBP20.07■□□□□ 0.8
CTCF-201ENST00000264010 USP6P35125 1406 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 LRRC7Q96NW7 1537 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 SBNO1A3KN83 1393 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 CHL1O00533 1208 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 ZNF853P0CG23 659 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 MTHFSDQ2M296 383 aaKnown RBP20.07■□□□□ 0.8
CTCF-201ENST00000264010 BMP2KLQ5H9B9 411 aa20.07■□□□□ 0.8
CTCF-201ENST00000264010 MCCP23508 829 aa20.06■□□□□ 0.8
CTCF-201ENST00000264010 GNAI2P04899 355 aa20.06■□□□□ 0.8
CTCF-201ENST00000264010 INTS3Q68E01 1043 aaKnown RBP20.06■□□□□ 0.8
CTCF-201ENST00000264010 MSNP26038 577 aaKnown RBP20.06■□□□□ 0.8
CTCF-201ENST00000264010 EYA1Q99502 592 aa20.06■□□□□ 0.8
CTCF-201ENST00000264010 MAPK8IP2Q13387 824 aaPredicted RBP20.05■□□□□ 0.8
CTCF-201ENST00000264010 KCNH5Q8NCM2 988 aa20.05■□□□□ 0.8
CTCF-201ENST00000264010 TECPR2O15040 1411 aa20.05■□□□□ 0.8
CTCF-201ENST00000264010 GBP4Q96PP9 640 aa20.05■□□□□ 0.8
CTCF-201ENST00000264010 KRT24Q2M2I5 525 aa20.04■□□□□ 0.8
CTCF-201ENST00000264010 PLEKHO1Q53GL0 409 aaPredicted RBP20.04■□□□□ 0.8
CTCF-201ENST00000264010 TBC1D2Q9BYX2 928 aa20.04■□□□□ 0.8
CTCF-201ENST00000264010 HDAC5Q9UQL6 1122 aa20.04■□□□□ 0.8
CTCF-201ENST00000264010 HTATSF1O43719 755 aaKnown RBP20.04■□□□□ 0.8
CTCF-201ENST00000264010 CSB-PGBD3P0DP91 1061 aa20.03■□□□□ 0.8
CTCF-201ENST00000264010 TAF7Q15545 349 aaPredicted RBP20.03■□□□□ 0.8
CTCF-201ENST00000264010 HDGFL1Q5TGJ6 251 aa20.03■□□□□ 0.8
CTCF-201ENST00000264010 PROSER2Q86WR7 435 aaPredicted RBP20.03■□□□□ 0.8
CTCF-201ENST00000264010 CDC42BPGQ6DT37 1551 aa20.03■□□□□ 0.8
CTCF-201ENST00000264010 GOLGA6L3A6NEY3 463 aa20.03■□□□□ 0.8
CTCF-201ENST00000264010 TRIM6-TRIM34B2RNG4 842 aa20.02■□□□□ 0.8
CTCF-201ENST00000264010 FOXO3O43524 673 aa20.02■□□□□ 0.8
CTCF-201ENST00000264010 RBM33Q96EV2 1170 aaKnown RBP20.02■□□□□ 0.8
CTCF-201ENST00000264010 ARHGEF10O15013 1369 aa20.02■□□□□ 0.8
CTCF-201ENST00000264010 REC8O95072 547 aa20.02■□□□□ 0.8
CTCF-201ENST00000264010 PIK3R4Q99570 1358 aa20.02■□□□□ 0.8
CTCF-201ENST00000264010 ADGRB2O60241 1585 aa20.02■□□□□ 0.79
CTCF-201ENST00000264010 ABCC4O15439 1325 aa20.01■□□□□ 0.79
CTCF-201ENST00000264010 UBTFL1P0CB47 393 aaPredicted RBP20.01■□□□□ 0.79
CTCF-201ENST00000264010 ADAMTS13Q76LX8 1427 aa20.01■□□□□ 0.79
CTCF-201ENST00000264010 ZNF530Q6P9A1 599 aaPredicted RBP20■□□□□ 0.79
CTCF-201ENST00000264010 ANKRD44Q8N8A2 993 aa20■□□□□ 0.79
CTCF-201ENST00000264010 PLCB2Q00722 1185 aa20■□□□□ 0.79
CTCF-201ENST00000264010 USHBP1Q8N6Y0 703 aa20■□□□□ 0.79
CTCF-201ENST00000264010 FOXD4L1Q9NU39 408 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 F6X3S4 739 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 HOXC9P31274 260 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 KIAA0232Q92628 1395 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 ST18O60284 1047 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 PTMSP20962 102 aa19.99■□□□□ 0.79
CTCF-201ENST00000264010 CPS1P31327 1500 aa19.98■□□□□ 0.79
CTCF-201ENST00000264010 RBM10P98175 930 aaKnown RBP19.98■□□□□ 0.79
CTCF-201ENST00000264010 KIF20BQ96Q89 1820 aa19.98■□□□□ 0.79
CTCF-201ENST00000264010 DDX11L8A8MPP1 907 aa19.97■□□□□ 0.79
CTCF-201ENST00000264010 KIF24Q5T7B8 1368 aa19.97■□□□□ 0.79
CTCF-201ENST00000264010 ATF3P18847 181 aa19.96■□□□□ 0.79
CTCF-201ENST00000264010 FLIIQ13045 1269 aa19.96■□□□□ 0.79
CTCF-201ENST00000264010 RILPL2Q969X0 211 aa19.96■□□□□ 0.79
CTCF-201ENST00000264010 MEIS3Q99687 375 aa19.96■□□□□ 0.79
CTCF-201ENST00000264010 DCTPP1Q9H773 170 aa19.96■□□□□ 0.79
CTCF-201ENST00000264010 XPCQ01831 940 aaPredicted RBP19.95■□□□□ 0.78
CTCF-201ENST00000264010 TBC1D9Q6ZT07 1266 aa19.95■□□□□ 0.78
CTCF-201ENST00000264010 RAPGEF4Q8WZA2 1011 aa19.94■□□□□ 0.78
CTCF-201ENST00000264010 PTCH1Q13635 1447 aa19.94■□□□□ 0.78
CTCF-201ENST00000264010 SRCIN1Q9C0H9 1055 aa19.94■□□□□ 0.78
CTCF-201ENST00000264010 SMARCA5O60264 1052 aaPredicted RBP19.93■□□□□ 0.78
CTCF-201ENST00000264010 LRRCC1Q9C099 1032 aa19.93■□□□□ 0.78
CTCF-201ENST00000264010 RABEP1Q15276 862 aa19.93■□□□□ 0.78
CTCF-201ENST00000264010 C9orf78Q9NZ63 289 aaPredicted RBP19.93■□□□□ 0.78
CTCF-201ENST00000264010 CEP85Q6P2H3 762 aa19.92■□□□□ 0.78
CTCF-201ENST00000264010 MAP3K5Q99683 1374 aa19.92■□□□□ 0.78
CTCF-201ENST00000264010 KIAA1211Q6ZU35 1233 aa19.92■□□□□ 0.78
CTCF-201ENST00000264010 AMOTQ4VCS5 1084 aa19.92■□□□□ 0.78
CTCF-201ENST00000264010 NLRP2Q9NX02 1062 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 BTBD11A6QL63 1104 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 HSP90AB4PQ58FF6 505 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 TTC22Q5TAA0 569 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 IP6K1Q92551 441 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 ANKRD26Q9UPS8 1709 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 PDE4CQ08493 712 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 EXOC6BQ9Y2D4 811 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 IGSF1Q8N6C5 1336 aa19.91■□□□□ 0.78
CTCF-201ENST00000264010 DDX58O95786 925 aaKnown RBP19.9■□□□□ 0.78
CTCF-201ENST00000264010 GPATCH3Q96I76 525 aa19.9■□□□□ 0.78
CTCF-201ENST00000264010 USP31Q70CQ4 1352 aa19.9■□□□□ 0.78
CTCF-201ENST00000264010 USP19O94966 1318 aa19.9■□□□□ 0.78
CTCF-201ENST00000264010 SOS1Q07889 1333 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms