RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 ZNF428Q96B54 188 aa20.45■□□□□ 0.86
ZNF541-201ENST00000263351 CPSF1Q10570 1443 aaKnown RBP20.45■□□□□ 0.86
ZNF541-201ENST00000263351 FOXD4L6Q3SYB3 417 aaPredicted RBP20.44■□□□□ 0.86
ZNF541-201ENST00000263351 FOXD4L3Q6VB84 417 aaPredicted RBP20.44■□□□□ 0.86
ZNF541-201ENST00000263351 NSFL1CQ9UNZ2 370 aaKnown RBP20.44■□□□□ 0.86
ZNF541-201ENST00000263351 DTNBO60941 627 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 SLC4A2P04920 1241 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 ANKRD44Q8N8A2 993 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 CALD1Q05682 793 aaKnown RBP20.43■□□□□ 0.86
ZNF541-201ENST00000263351 EXOC6BQ9Y2D4 811 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 A2ML1A8K2U0 1454 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 ATP7BP35670 1465 aa20.43■□□□□ 0.86
ZNF541-201ENST00000263351 TRIM44Q96DX7 344 aaPredicted RBP20.42■□□□□ 0.86
ZNF541-201ENST00000263351 EDC4Q6P2E9 1401 aaKnown RBP20.42■□□□□ 0.86
ZNF541-201ENST00000263351 ZDHHC9Q9Y397 364 aa20.42■□□□□ 0.86
ZNF541-201ENST00000263351 RTL1A6NKG5 1358 aa20.42■□□□□ 0.86
ZNF541-201ENST00000263351 RIMBP3CA6NJZ7 1639 aa20.41■□□□□ 0.86
ZNF541-201ENST00000263351 RIMBP3BA6NNM3 1639 aa20.41■□□□□ 0.86
ZNF541-201ENST00000263351 RIMBP3Q9UFD9 1639 aa20.41■□□□□ 0.86
ZNF541-201ENST00000263351 CDK12Q9NYV4 1490 aaPredicted RBP20.41■□□□□ 0.86
ZNF541-201ENST00000263351 INTS3Q68E01 1043 aaKnown RBP20.41■□□□□ 0.86
ZNF541-201ENST00000263351 NASPP49321 788 aaPredicted RBP20.41■□□□□ 0.86
ZNF541-201ENST00000263351 TPRNQ4KMQ1 711 aa20.41■□□□□ 0.86
ZNF541-201ENST00000263351 PRPF40AO75400 957 aaKnown RBP20.4■□□□□ 0.86
ZNF541-201ENST00000263351 CCDC61Q9Y6R9 512 aa20.4■□□□□ 0.86
ZNF541-201ENST00000263351 UBE2Q2Q8WVN8 375 aa20.4■□□□□ 0.86
ZNF541-201ENST00000263351 FAM69CQ0P6D2 419 aa20.39■□□□□ 0.85
ZNF541-201ENST00000263351 LMBRD1Q9NUN5 540 aa20.39■□□□□ 0.85
ZNF541-201ENST00000263351 RABEP1Q15276 862 aa20.38■□□□□ 0.85
ZNF541-201ENST00000263351 GPT2Q8TD30 523 aa20.38■□□□□ 0.85
ZNF541-201ENST00000263351 RIMS1Q86UR5 1692 aaKnown RBP20.38■□□□□ 0.85
ZNF541-201ENST00000263351 CHL1O00533 1208 aa20.38■□□□□ 0.85
ZNF541-201ENST00000263351 PLPPR3Q6T4P5 718 aa20.38■□□□□ 0.85
ZNF541-201ENST00000263351 RBSNQ9H1K0 784 aa20.37■□□□□ 0.85
ZNF541-201ENST00000263351 PALD1Q9ULE6 856 aa20.37■□□□□ 0.85
ZNF541-201ENST00000263351 LMOD3Q0VAK6 560 aa20.37■□□□□ 0.85
ZNF541-201ENST00000263351 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.37■□□□□ 0.85
ZNF541-201ENST00000263351 TSPOAP1O95153 1857 aa20.36■□□□□ 0.85
ZNF541-201ENST00000263351 PRIM1P49642 420 aaKnown RBP20.36■□□□□ 0.85
ZNF541-201ENST00000263351 KLHL40Q2TBA0 621 aa20.36■□□□□ 0.85
ZNF541-201ENST00000263351 ZSCAN23Q3MJ62 389 aa20.36■□□□□ 0.85
ZNF541-201ENST00000263351 SETD1AO15047 1707 aaKnown RBP20.36■□□□□ 0.85
ZNF541-201ENST00000263351 ZBTB7CA1YPR0 619 aa20.36■□□□□ 0.85
ZNF541-201ENST00000263351 CYP2E1P05181 493 aaPredicted RBP20.35■□□□□ 0.85
ZNF541-201ENST00000263351 SKOR2Q2VWA4 1001 aaPredicted RBP20.35■□□□□ 0.85
ZNF541-201ENST00000263351 CHMP4BQ9H444 224 aaKnown RBP20.35■□□□□ 0.85
ZNF541-201ENST00000263351 IL25Q9H293 177 aa20.35■□□□□ 0.85
ZNF541-201ENST00000263351 MTHFSDQ2M296 383 aaKnown RBP20.34■□□□□ 0.85
ZNF541-201ENST00000263351 GOLGA6L22H0YM25 854 aa20.34■□□□□ 0.85
ZNF541-201ENST00000263351 ACEP12821 1306 aa20.34■□□□□ 0.85
ZNF541-201ENST00000263351 MAP3K19Q56UN5 1328 aa20.34■□□□□ 0.85
ZNF541-201ENST00000263351 PNMA6EA0A0J9YXQ4 647 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 NUTM2GQ5VZR2 741 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 UNC5CLQ8IV45 518 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 AATKQ6ZMQ8 1374 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 DLC1Q96QB1 1528 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 NRXN3Q9Y4C0 1643 aa20.33■□□□□ 0.85
ZNF541-201ENST00000263351 ROBO2Q9HCK4 1378 aa20.33■□□□□ 0.84
ZNF541-201ENST00000263351 NEK4P51957 841 aa20.33■□□□□ 0.84
ZNF541-201ENST00000263351 MPNDQ8N594 471 aa20.33■□□□□ 0.84
ZNF541-201ENST00000263351 TTC21BQ7Z4L5 1316 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 MAP4K4O95819 1239 aaPredicted RBP20.32■□□□□ 0.84
ZNF541-201ENST00000263351 LARP6Q9BRS8 491 aaKnown RBP20.32■□□□□ 0.84
ZNF541-201ENST00000263351 GDPD2Q9HCC8 539 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 PDE1AP54750 535 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 RPAP2Q8IXW5 612 aaPredicted RBP20.32■□□□□ 0.84
ZNF541-201ENST00000263351 RNF214Q8ND24 703 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 TMEM63CQ9P1W3 806 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 TSPYL4Q9UJ04 414 aa20.32■□□□□ 0.84
ZNF541-201ENST00000263351 UPF3BQ9BZI7 483 aaKnown RBP20.31■□□□□ 0.84
ZNF541-201ENST00000263351 SYCE3A1L190 88 aa20.3■□□□□ 0.84
ZNF541-201ENST00000263351 RILPL2Q969X0 211 aa20.3■□□□□ 0.84
ZNF541-201ENST00000263351 PEAK1Q9H792 1746 aa20.29■□□□□ 0.84
ZNF541-201ENST00000263351 SLC26A8Q96RN1 970 aa20.29■□□□□ 0.84
ZNF541-201ENST00000263351 CLEC17AQ6ZS10 378 aa20.29■□□□□ 0.84
ZNF541-201ENST00000263351 IL1RAPL2Q9NP60 686 aa20.29■□□□□ 0.84
ZNF541-201ENST00000263351 CRB1P82279 1406 aa20.28■□□□□ 0.84
ZNF541-201ENST00000263351 ERC2O15083 957 aa20.28■□□□□ 0.84
ZNF541-201ENST00000263351 TMX3Q96JJ7 454 aa20.28■□□□□ 0.84
ZNF541-201ENST00000263351 TRIM6-TRIM34B2RNG4 842 aa20.27■□□□□ 0.84
ZNF541-201ENST00000263351 ST18O60284 1047 aa20.27■□□□□ 0.83
ZNF541-201ENST00000263351 ISY1Q9ULR0 285 aaKnown RBP20.27■□□□□ 0.83
ZNF541-201ENST00000263351 C3P01024 1663 aa20.27■□□□□ 0.83
ZNF541-201ENST00000263351 NUCB2P80303 420 aa20.26■□□□□ 0.83
ZNF541-201ENST00000263351 CCDC173Q0VFZ6 552 aa20.26■□□□□ 0.83
ZNF541-201ENST00000263351 PPP1R9BQ96SB3 815 aa20.26■□□□□ 0.83
ZNF541-201ENST00000263351 ANO2Q9NQ90 1003 aa20.26■□□□□ 0.83
ZNF541-201ENST00000263351 KIAA1211Q6ZU35 1233 aa20.26■□□□□ 0.83
ZNF541-201ENST00000263351 LTV1Q96GA3 475 aaPredicted RBP20.26■□□□□ 0.83
ZNF541-201ENST00000263351 MON2Q7Z3U7 1717 aa20.25■□□□□ 0.83
ZNF541-201ENST00000263351 XPCQ01831 940 aaPredicted RBP20.25■□□□□ 0.83
ZNF541-201ENST00000263351 FKBP5Q13451 457 aaPredicted RBP20.25■□□□□ 0.83
ZNF541-201ENST00000263351 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.25■□□□□ 0.83
ZNF541-201ENST00000263351 HSP90AA2PQ14568 343 aaPredicted RBP20.24■□□□□ 0.83
ZNF541-201ENST00000263351 PLEKHG5O94827 1062 aa20.24■□□□□ 0.83
ZNF541-201ENST00000263351 CASC1Q6TDU7 716 aa20.24■□□□□ 0.83
ZNF541-201ENST00000263351 NUTM1Q86Y26 1132 aa20.24■□□□□ 0.83
ZNF541-201ENST00000263351 ZNF445P59923 1031 aa20.23■□□□□ 0.83
ZNF541-201ENST00000263351 LRRFIP2Q9Y608 721 aaKnown RBP20.23■□□□□ 0.83
ZNF541-201ENST00000263351 REC8O95072 547 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms