RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HOXC9P31274 260 aa16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 MCM10Q7L590 875 aa16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 PDZRN3Q9UPQ7 1066 aa16.42■□□□□ 0.22
SPTLC1-201ENST00000262554 LTN1O94822 1766 aa16.41■□□□□ 0.22
SPTLC1-201ENST00000262554 CHL1O00533 1208 aa16.41■□□□□ 0.22
SPTLC1-201ENST00000262554 RBM33Q96EV2 1170 aaKnown RBP16.41■□□□□ 0.22
SPTLC1-201ENST00000262554 DDRGK1Q96HY6 314 aa16.41■□□□□ 0.22
SPTLC1-201ENST00000262554 NWD1Q149M9 1564 aa16.4■□□□□ 0.22
SPTLC1-201ENST00000262554 ESCO1Q5FWF5 840 aa16.4■□□□□ 0.22
SPTLC1-201ENST00000262554 RTL1A6NKG5 1358 aa16.4■□□□□ 0.22
SPTLC1-201ENST00000262554 GAS2L2Q8NHY3 880 aa16.39■□□□□ 0.22
SPTLC1-201ENST00000262554 RTF1Q92541 710 aaKnown RBP16.39■□□□□ 0.22
SPTLC1-201ENST00000262554 PSME1Q06323 249 aa16.39■□□□□ 0.21
SPTLC1-201ENST00000262554 MTHFSDQ2M296 383 aaKnown RBP16.39■□□□□ 0.21
SPTLC1-201ENST00000262554 API5Q9BZZ5 524 aaKnown RBP16.39■□□□□ 0.21
SPTLC1-201ENST00000262554 KIAA0232Q92628 1395 aa16.39■□□□□ 0.21
SPTLC1-201ENST00000262554 CRB1P82279 1406 aa16.38■□□□□ 0.21
SPTLC1-201ENST00000262554 ABCC4O15439 1325 aa16.37■□□□□ 0.21
SPTLC1-201ENST00000262554 DNAJC5Q9H3Z4 198 aa16.37■□□□□ 0.21
SPTLC1-201ENST00000262554 HTATSF1O43719 755 aaKnown RBP16.36■□□□□ 0.21
SPTLC1-201ENST00000262554 NFAT5O94916 1531 aa16.36■□□□□ 0.21
SPTLC1-201ENST00000262554 ZBTB7BO15156 539 aaPredicted RBP16.35■□□□□ 0.21
SPTLC1-201ENST00000262554 FOXO3O43524 673 aa16.35■□□□□ 0.21
SPTLC1-201ENST00000262554 SAMD1Q6SPF0 538 aaPredicted RBP16.35■□□□□ 0.21
SPTLC1-201ENST00000262554 SMC5Q8IY18 1101 aa16.35■□□□□ 0.21
SPTLC1-201ENST00000262554 KCNH5Q8NCM2 988 aa16.35■□□□□ 0.21
SPTLC1-201ENST00000262554 LTV1Q96GA3 475 aaPredicted RBP16.34■□□□□ 0.21
SPTLC1-201ENST00000262554 PROSER2Q86WR7 435 aaPredicted RBP16.33■□□□□ 0.21
SPTLC1-201ENST00000262554 IP6K1Q92551 441 aa16.33■□□□□ 0.21
SPTLC1-201ENST00000262554 LRRC37A3O60309 1634 aa16.33■□□□□ 0.2
SPTLC1-201ENST00000262554 PHRF1Q9P1Y6 1649 aaKnown RBP16.33■□□□□ 0.2
SPTLC1-201ENST00000262554 GNAT3A8MTJ3 354 aa16.33■□□□□ 0.2
SPTLC1-201ENST00000262554 TSPYL4Q9UJ04 414 aa16.33■□□□□ 0.2
SPTLC1-201ENST00000262554 KRT24Q2M2I5 525 aa16.32■□□□□ 0.2
SPTLC1-201ENST00000262554 KIF1AQ12756 1690 aa16.32■□□□□ 0.2
SPTLC1-201ENST00000262554 ATF5Q9Y2D1 282 aaPredicted RBP16.31■□□□□ 0.2
SPTLC1-201ENST00000262554 ORAI2Q96SN7 254 aa16.31■□□□□ 0.2
SPTLC1-201ENST00000262554 PTPRCP08575 1304 aa16.31■□□□□ 0.2
SPTLC1-201ENST00000262554 MAP3K5Q99683 1374 aa16.3■□□□□ 0.2
SPTLC1-201ENST00000262554 MIS18AQ9NYP9 233 aa16.3■□□□□ 0.2
SPTLC1-201ENST00000262554 NUCB1Q02818 461 aa16.29■□□□□ 0.2
SPTLC1-201ENST00000262554 INTS3Q68E01 1043 aaKnown RBP16.29■□□□□ 0.2
SPTLC1-201ENST00000262554 GCC1Q96CN9 775 aa16.29■□□□□ 0.2
SPTLC1-201ENST00000262554 DAXXQ9UER7 740 aaPredicted RBP16.29■□□□□ 0.2
SPTLC1-201ENST00000262554 TRPM3Q9HCF6 1732 aaPredicted RBP16.28■□□□□ 0.2
SPTLC1-201ENST00000262554 C19orf44Q9H6X5 657 aa16.28■□□□□ 0.2
SPTLC1-201ENST00000262554 SLIT3O75094 1523 aa16.28■□□□□ 0.2
SPTLC1-201ENST00000262554 BABAM1Q9NWV8 329 aa16.27■□□□□ 0.2
SPTLC1-201ENST00000262554 C1orf167Q5SNV9 1468 aa16.27■□□□□ 0.2
SPTLC1-201ENST00000262554 RGS12O14924 1447 aa16.27■□□□□ 0.19
SPTLC1-201ENST00000262554 ZBTB7CA1YPR0 619 aa16.27■□□□□ 0.19
SPTLC1-201ENST00000262554 USHBP1Q8N6Y0 703 aa16.27■□□□□ 0.19
SPTLC1-201ENST00000262554 C1orf115Q9H7X2 142 aa16.27■□□□□ 0.19
SPTLC1-201ENST00000262554 UPF2Q9HAU5 1272 aaKnown RBP16.27■□□□□ 0.19
SPTLC1-201ENST00000262554 MSH6P52701 1360 aa16.26■□□□□ 0.19
SPTLC1-201ENST00000262554 RGPD2P0DJD1 1756 aa16.26■□□□□ 0.19
SPTLC1-201ENST00000262554 XPCQ01831 940 aaPredicted RBP16.26■□□□□ 0.19
SPTLC1-201ENST00000262554 SEC24BO95487 1268 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 GCP02774 474 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 KRT28Q7Z3Y7 464 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 CHD1LQ86WJ1 897 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 SOS1Q07889 1333 aaPredicted RBP16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 NBPF6Q5VWK0 638 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 LMOD2Q6P5Q4 547 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 NBPF4Q96M43 638 aa16.25■□□□□ 0.19
SPTLC1-201ENST00000262554 USP19O94966 1318 aa16.24■□□□□ 0.19
SPTLC1-201ENST00000262554 TAF7Q15545 349 aaPredicted RBP16.24■□□□□ 0.19
SPTLC1-201ENST00000262554 IL17REQ8NFR9 667 aa16.24■□□□□ 0.19
SPTLC1-201ENST00000262554 STK31Q9BXU1 1019 aa16.24■□□□□ 0.19
SPTLC1-201ENST00000262554 FAM208AQ9UK61 1670 aaKnown RBP16.23■□□□□ 0.19
SPTLC1-201ENST00000262554 ARHGEF25Q86VW2 580 aa16.23■□□□□ 0.19
SPTLC1-201ENST00000262554 LNPKQ9C0E8 428 aa16.23■□□□□ 0.19
SPTLC1-201ENST00000262554 ATF3P18847 181 aa16.22■□□□□ 0.19
SPTLC1-201ENST00000262554 ANKRD45Q5TZF3 282 aa16.22■□□□□ 0.19
SPTLC1-201ENST00000262554 SIRT2Q8IXJ6 389 aa16.22■□□□□ 0.19
SPTLC1-201ENST00000262554 CCDC30Q5VVM6 783 aa16.22■□□□□ 0.19
SPTLC1-201ENST00000262554 LMO7Q8WWI1 1683 aa16.22■□□□□ 0.19
SPTLC1-201ENST00000262554 DCCP43146 1447 aa16.21■□□□□ 0.19
SPTLC1-201ENST00000262554 MST1RQ04912 1400 aa16.21■□□□□ 0.19
SPTLC1-201ENST00000262554 NCOA3Q9Y6Q9 1424 aa16.21■□□□□ 0.19
SPTLC1-201ENST00000262554 STRCP1A6NGW2 1772 aa16.21■□□□□ 0.19
SPTLC1-201ENST00000262554 ALS2Q96Q42 1657 aa16.21■□□□□ 0.19
SPTLC1-201ENST00000262554 TMEM94Q12767 1356 aa16.21■□□□□ 0.18
SPTLC1-201ENST00000262554 NBR1Q14596 966 aa16.2■□□□□ 0.18
SPTLC1-201ENST00000262554 CEMIPQ8WUJ3 1361 aa16.2■□□□□ 0.18
SPTLC1-201ENST00000262554 PLEKHO1Q53GL0 409 aaPredicted RBP16.2■□□□□ 0.18
SPTLC1-201ENST00000262554 LRRC59Q96AG4 307 aaKnown RBP16.2■□□□□ 0.18
SPTLC1-201ENST00000262554 PLEKHG5O94827 1062 aa16.19■□□□□ 0.18
SPTLC1-201ENST00000262554 CCT4P50991 539 aaKnown RBP16.19■□□□□ 0.18
SPTLC1-201ENST00000262554 RPAP2Q8IXW5 612 aaPredicted RBP16.19■□□□□ 0.18
SPTLC1-201ENST00000262554 NCAPD2Q15021 1401 aa16.19■□□□□ 0.18
SPTLC1-201ENST00000262554 CAMTA1Q9Y6Y1 1673 aa16.19■□□□□ 0.18
SPTLC1-201ENST00000262554 MED1Q15648 1581 aaPredicted RBP16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 AMOTQ4VCS5 1084 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 G2E3Q7L622 706 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 ANKRD44Q8N8A2 993 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 ANKRD24Q8TF21 1146 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 TBC1D32Q96NH3 1257 aa16.18■□□□□ 0.18
SPTLC1-201ENST00000262554 SLC4A3P48751 1232 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms