RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 NBPF6Q5VWK0 638 aa16.93■□□□□ 0.3
TRAF4-202ENST00000262396 NBPF4Q96M43 638 aa16.93■□□□□ 0.3
TRAF4-202ENST00000262396 CGNL1Q0VF96 1302 aa16.93■□□□□ 0.3
TRAF4-202ENST00000262396 FAM208AQ9UK61 1670 aaKnown RBP16.92■□□□□ 0.3
TRAF4-202ENST00000262396 HSP90AB2PQ58FF8 381 aa16.92■□□□□ 0.3
TRAF4-202ENST00000262396 ARXQ96QS3 562 aa16.92■□□□□ 0.3
TRAF4-202ENST00000262396 NSD3Q9BZ95 1437 aa16.91■□□□□ 0.3
TRAF4-202ENST00000262396 FHDC1Q9C0D6 1143 aaPredicted RBP16.91■□□□□ 0.3
TRAF4-202ENST00000262396 CCNL1Q9UK58 526 aaPredicted RBP16.91■□□□□ 0.3
TRAF4-202ENST00000262396 FLT4P35916 1363 aa16.9■□□□□ 0.3
TRAF4-202ENST00000262396 HMGB2P26583 209 aaKnown RBP16.9■□□□□ 0.3
TRAF4-202ENST00000262396 PTGER2P43116 358 aa16.9■□□□□ 0.3
TRAF4-202ENST00000262396 ZNF827Q17R98 1081 aa16.9■□□□□ 0.3
TRAF4-202ENST00000262396 CCER1Q8TC90 406 aaPredicted RBP16.9■□□□□ 0.3
TRAF4-202ENST00000262396 LRRC4BQ9NT99 713 aa16.9■□□□□ 0.3
TRAF4-202ENST00000262396 CLSPNQ9HAW4 1339 aa16.9■□□□□ 0.3
TRAF4-202ENST00000262396 KCNQ4P56696 695 aa16.89■□□□□ 0.29
TRAF4-202ENST00000262396 PCDH11XQ9BZA7 1347 aa16.89■□□□□ 0.29
TRAF4-202ENST00000262396 PCDH11YQ9BZA8 1340 aa16.89■□□□□ 0.29
TRAF4-202ENST00000262396 BTAF1O14981 1849 aa16.89■□□□□ 0.29
TRAF4-202ENST00000262396 INSRP06213 1382 aa16.89■□□□□ 0.29
TRAF4-202ENST00000262396 SLC16A10Q8TF71 515 aa16.88■□□□□ 0.29
TRAF4-202ENST00000262396 SYT17Q9BSW7 474 aa16.88■□□□□ 0.29
TRAF4-202ENST00000262396 CASZ1Q86V15 1759 aa16.87■□□□□ 0.29
TRAF4-202ENST00000262396 MEGF6O75095 1541 aa16.87■□□□□ 0.29
TRAF4-202ENST00000262396 MPRIPQ6WCQ1 1025 aa16.87■□□□□ 0.29
TRAF4-202ENST00000262396 PELP1Q8IZL8 1130 aaKnown RBP16.87■□□□□ 0.29
TRAF4-202ENST00000262396 EMILIN1Q9Y6C2 1016 aa16.87■□□□□ 0.29
TRAF4-202ENST00000262396 KIF24Q5T7B8 1368 aa16.87■□□□□ 0.29
TRAF4-202ENST00000262396 TNNT2P45379 298 aaPredicted RBP16.86■□□□□ 0.29
TRAF4-202ENST00000262396 EIF4G2P78344 907 aaKnown RBP eCLIP16.86■□□□□ 0.29
TRAF4-202ENST00000262396 CARD14Q9BXL6 1004 aa16.86■□□□□ 0.29
TRAF4-202ENST00000262396 SPG7Q9UQ90 795 aa16.86■□□□□ 0.29
TRAF4-202ENST00000262396 GPR162Q16538 588 aa16.85■□□□□ 0.29
TRAF4-202ENST00000262396 AKT1S1Q96B36 256 aa16.85■□□□□ 0.29
TRAF4-202ENST00000262396 MYOM1P52179 1685 aa16.83■□□□□ 0.28
TRAF4-202ENST00000262396 KIF20BQ96Q89 1820 aa16.83■□□□□ 0.28
TRAF4-202ENST00000262396 PNPLA7Q6ZV29 1317 aa16.82■□□□□ 0.28
TRAF4-202ENST00000262396 SMARCC1Q92922 1105 aaPredicted RBP16.82■□□□□ 0.28
TRAF4-202ENST00000262396 DOT1LQ8TEK3 1739 aa16.82■□□□□ 0.28
TRAF4-202ENST00000262396 RGPD2P0DJD1 1756 aa16.8■□□□□ 0.28
TRAF4-202ENST00000262396 AK7Q96M32 723 aa16.8■□□□□ 0.28
TRAF4-202ENST00000262396 SGIP1Q9BQI5 828 aa16.8■□□□□ 0.28
TRAF4-202ENST00000262396 PALLDQ8WX93 1383 aa16.79■□□□□ 0.28
TRAF4-202ENST00000262396 WASHC2AQ641Q2 1341 aa16.79■□□□□ 0.28
TRAF4-202ENST00000262396 HSPA5P11021 654 aaKnown RBP16.79■□□□□ 0.28
TRAF4-202ENST00000262396 FLAD1Q8NFF5 587 aa16.79■□□□□ 0.28
TRAF4-202ENST00000262396 NSD2O96028 1365 aa16.78■□□□□ 0.28
TRAF4-202ENST00000262396 CYP27B1O15528 508 aa16.78■□□□□ 0.28
TRAF4-202ENST00000262396 MSL1Q68DK7 614 aa16.78■□□□□ 0.28
TRAF4-202ENST00000262396 TMOD3Q9NYL9 352 aa16.78■□□□□ 0.28
TRAF4-202ENST00000262396 PAPPAQ13219 1627 aa16.78■□□□□ 0.28
TRAF4-202ENST00000262396 EYA1Q99502 592 aa16.77■□□□□ 0.28
TRAF4-202ENST00000262396 PANK3Q9H999 370 aa16.77■□□□□ 0.28
TRAF4-202ENST00000262396 POLKQ9UBT6 870 aa16.77■□□□□ 0.28
TRAF4-202ENST00000262396 MORC1Q86VD1 984 aa16.76■□□□□ 0.27
TRAF4-202ENST00000262396 COL23A1Q86Y22 540 aaPredicted RBP16.76■□□□□ 0.27
TRAF4-202ENST00000262396 IFNL2Q8IZJ0 200 aa16.76■□□□□ 0.27
TRAF4-202ENST00000262396 PHF14O94880 888 aa16.75■□□□□ 0.27
TRAF4-202ENST00000262396 PIGBQ92521 554 aa16.74■□□□□ 0.27
TRAF4-202ENST00000262396 KNSTRNQ9Y448 316 aa16.74■□□□□ 0.27
TRAF4-202ENST00000262396 MAP3K5Q99683 1374 aa16.74■□□□□ 0.27
TRAF4-202ENST00000262396 EIF4A2Q14240 407 aaKnown RBP16.73■□□□□ 0.27
TRAF4-202ENST00000262396 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.273e-6■□□□□ 10.9
TRAF4-202ENST00000262396 PLEKHO1Q53GL0 409 aaPredicted RBP16.72■□□□□ 0.27
TRAF4-202ENST00000262396 SHANK3Q9BYB0 1731 aa16.71■□□□□ 0.27
TRAF4-202ENST00000262396 HSP90AB1P08238 724 aaKnown RBP16.71■□□□□ 0.27
TRAF4-202ENST00000262396 PHKG2P15735 406 aa16.71■□□□□ 0.27
TRAF4-202ENST00000262396 ATP6V1AP38606 617 aa16.71■□□□□ 0.27
TRAF4-202ENST00000262396 NKX1-1Q15270 411 aaPredicted RBP16.71■□□□□ 0.27
TRAF4-202ENST00000262396 ZNF784Q8NCA9 323 aaPredicted RBP16.71■□□□□ 0.27
TRAF4-202ENST00000262396 LOC102724428A0A0B4J2F2 783 aa16.7■□□□□ 0.26
TRAF4-202ENST00000262396 GRIN3BO60391 1043 aa16.7■□□□□ 0.26
TRAF4-202ENST00000262396 SIK1P57059 783 aa16.7■□□□□ 0.26
TRAF4-202ENST00000262396 NLGN2Q8NFZ4 835 aa16.7■□□□□ 0.26
TRAF4-202ENST00000262396 LY75O60449 1722 aa16.7■□□□□ 0.26
TRAF4-202ENST00000262396 C1orf141Q5JVX7 400 aa16.69■□□□□ 0.26
TRAF4-202ENST00000262396 RBM42Q9BTD8 480 aaKnown RBP16.69■□□□□ 0.26
TRAF4-202ENST00000262396 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.68■□□□□ 0.26
TRAF4-202ENST00000262396 GNPATO15228 680 aa16.68■□□□□ 0.26
TRAF4-202ENST00000262396 ZNF530Q6P9A1 599 aaPredicted RBP16.68■□□□□ 0.26
TRAF4-202ENST00000262396 ASAP1Q9ULH1 1129 aa16.68■□□□□ 0.26
TRAF4-202ENST00000262396 QSER1Q2KHR3 1735 aa16.67■□□□□ 0.26
TRAF4-202ENST00000262396 CABP4P57796 275 aa16.67■□□□□ 0.26
TRAF4-202ENST00000262396 AMOTQ4VCS5 1084 aa16.67■□□□□ 0.26
TRAF4-202ENST00000262396 MAP2P11137 1827 aaKnown RBP16.67■□□□□ 0.26
TRAF4-202ENST00000262396 SSFA2P28290 1259 aa16.66■□□□□ 0.26
TRAF4-202ENST00000262396 DCAF5Q96JK2 942 aa16.66■□□□□ 0.26
TRAF4-202ENST00000262396 MTHFSP49914 203 aa16.65■□□□□ 0.26
TRAF4-202ENST00000262396 CD2APQ9Y5K6 639 aa16.65■□□□□ 0.26
TRAF4-202ENST00000262396 C5P01031 1676 aa16.65■□□□□ 0.26
TRAF4-202ENST00000262396 IGSF1Q8N6C5 1336 aa16.65■□□□□ 0.26
TRAF4-202ENST00000262396 ERVV-2B6SEH9 535 aa16.64■□□□□ 0.25
TRAF4-202ENST00000262396 LINC00116Q8NCU8 138 aa16.64■□□□□ 0.25
TRAF4-202ENST00000262396 ATG3Q9NT62 314 aa16.64■□□□□ 0.25
TRAF4-202ENST00000262396 RTCBQ9Y3I0 505 aaKnown RBP16.64■□□□□ 0.25
TRAF4-202ENST00000262396 PKD1L3Q7Z443 1732 aa16.64■□□□□ 0.25
TRAF4-202ENST00000262396 NCAPD2Q15021 1401 aa16.63■□□□□ 0.25
TRAF4-202ENST00000262396 CNGB1Q14028 1251 aaPredicted RBP16.63■□□□□ 0.25
TRAF4-202ENST00000262396 SULT6B1Q6IMI4 303 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms