RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 PCDHGA11Q9Y5H2 935 aa8.43□□□□□ -1.06
CCDC54-201ENST00000261058 LILRA1O75019 489 aa8.42□□□□□ -1.06
CCDC54-201ENST00000261058 SCTRP47872 440 aa8.42□□□□□ -1.06
CCDC54-201ENST00000261058 FOXC1Q12948 553 aa8.42□□□□□ -1.06
CCDC54-201ENST00000261058 TRIM50Q86XT4 487 aa8.42□□□□□ -1.06
CCDC54-201ENST00000261058 SIX5Q8N196 739 aa8.42□□□□□ -1.06
CCDC54-201ENST00000261058 KLF16Q9BXK1 252 aaPredicted RBP8.42□□□□□ -1.06
CCDC54-201ENST00000261058 TMEM88BA6NKF7 163 aa8.41□□□□□ -1.06
CCDC54-201ENST00000261058 ZBTB7BO15156 539 aaPredicted RBP8.41□□□□□ -1.06
CCDC54-201ENST00000261058 RASA1P20936 1047 aa8.41□□□□□ -1.06
CCDC54-201ENST00000261058 PPP1R26Q5T8A7 1209 aaPredicted RBP8.41□□□□□ -1.06
CCDC54-201ENST00000261058 LARGE2Q8N3Y3 721 aa8.41□□□□□ -1.06
CCDC54-201ENST00000261058 OGFOD1Q8N543 542 aa8.41□□□□□ -1.06
CCDC54-201ENST00000261058 ALDH1A1P00352 501 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 ATP1A2P50993 1020 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 RAB15P59190 212 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 GTF2IP78347 998 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 CC2D2BQ6DHV5 1058 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 ZNF784Q8NCA9 323 aaPredicted RBP8.4□□□□□ -1.06
CCDC54-201ENST00000261058 TMPRSS4Q9NRS4 437 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 KIAA1024Q9UPX6 916 aa8.4□□□□□ -1.06
CCDC54-201ENST00000261058 TRIM52Q96A61 297 aa8.39□□□□□ -1.07
CCDC54-201ENST00000261058 OSBPL3Q9H4L5 887 aa8.39□□□□□ -1.07
CCDC54-201ENST00000261058 DNAAF2Q9NVR5 837 aaKnown RBP8.39□□□□□ -1.07
CCDC54-201ENST00000261058 NOVA2Q9UNW9 492 aaKnown RBP8.39□□□□□ -1.07
CCDC54-201ENST00000261058 EMILIN1Q9Y6C2 1016 aa8.39□□□□□ -1.07
CCDC54-201ENST00000261058 J3QL48 77 aa8.38□□□□□ -1.07
CCDC54-201ENST00000261058 NNTQ13423 1086 aa8.38□□□□□ -1.07
CCDC54-201ENST00000261058 LARP1Q6PKG0 1096 aaKnown RBP8.38□□□□□ -1.07
CCDC54-201ENST00000261058 ANKMY2Q8IV38 441 aa8.38□□□□□ -1.07
CCDC54-201ENST00000261058 STK32AQ8WU08 396 aa8.38□□□□□ -1.07
CCDC54-201ENST00000261058 TNFRSF10AO00220 468 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 MYCP01106 439 aaPredicted RBP8.37□□□□□ -1.07
CCDC54-201ENST00000261058 CSB-PGBD3P0DP91 1061 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 SMPD1P17405 629 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 PDE4CQ08493 712 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 FAM69CQ0P6D2 419 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 TMEM164Q5U3C3 297 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 LCE2BO14633 110 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 PDIA4P13667 645 aaKnown RBP8.37□□□□□ -1.07
CCDC54-201ENST00000261058 ADD1P35611 737 aaKnown RBP8.37□□□□□ -1.07
CCDC54-201ENST00000261058 MYT1Q01538 1121 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 CYP4X1Q8N118 509 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 CYLDQ9NQC7 956 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 WASF2Q9Y6W5 498 aa8.37□□□□□ -1.07
CCDC54-201ENST00000261058 WASLO00401 505 aaPredicted RBP8.36□□□□□ -1.07
CCDC54-201ENST00000261058 DPYDQ12882 1025 aa8.36□□□□□ -1.07
CCDC54-201ENST00000261058 CCDC102BQ68D86 513 aa8.36□□□□□ -1.07
CCDC54-201ENST00000261058 PGPEP1Q9NXJ5 209 aa8.36□□□□□ -1.07
CCDC54-201ENST00000261058 PDZRN3Q9UPQ7 1066 aa8.36□□□□□ -1.07
CCDC54-201ENST00000261058 TTC24A2A3L6 582 aaPredicted RBP8.35□□□□□ -1.07
CCDC54-201ENST00000261058 SCNN1DP51172 638 aa8.35□□□□□ -1.07
CCDC54-201ENST00000261058 Q6ZVU0 165 aa8.35□□□□□ -1.07
CCDC54-201ENST00000261058 ZNF594Q96JF6 807 aaPredicted RBP8.35□□□□□ -1.07
CCDC54-201ENST00000261058 M0R2N6 131 aa8.34□□□□□ -1.07
CCDC54-201ENST00000261058 TIMP2P16035 220 aa8.34□□□□□ -1.07
CCDC54-201ENST00000261058 SWI5Q1ZZU3 235 aa8.34□□□□□ -1.07
CCDC54-201ENST00000261058 KDF1Q8NAX2 398 aaPredicted RBP8.34□□□□□ -1.07
CCDC54-201ENST00000261058 TPCN2Q8NHX9 752 aa8.34□□□□□ -1.07
CCDC54-201ENST00000261058 ITPKCQ96DU7 683 aa8.34□□□□□ -1.07
CCDC54-201ENST00000261058 TMEM229AB2RXF0 380 aa8.33□□□□□ -1.08
CCDC54-201ENST00000261058 FAM200AQ8TCP9 573 aa8.33□□□□□ -1.08
CCDC54-201ENST00000261058 CARNS1A5YM72 827 aa8.32□□□□□ -1.08
CCDC54-201ENST00000261058 GNRH1P01148 92 aa8.32□□□□□ -1.08
CCDC54-201ENST00000261058 SEC13P55735 322 aa8.32□□□□□ -1.08
CCDC54-201ENST00000261058 CYP2U1Q7Z449 544 aa8.32□□□□□ -1.08
CCDC54-201ENST00000261058 CLP1Q92989 425 aaKnown RBP8.32□□□□□ -1.08
CCDC54-201ENST00000261058 SLAIN2Q9P270 581 aa8.32□□□□□ -1.08
CCDC54-201ENST00000261058 ZIC2O95409 532 aaPredicted RBP8.31□□□□□ -1.08
CCDC54-201ENST00000261058 ADH1AP07327 375 aa8.31□□□□□ -1.08
CCDC54-201ENST00000261058 HPS1Q92902 700 aa8.31□□□□□ -1.08
CCDC54-201ENST00000261058 WDR4P57081 412 aaKnown RBP8.3□□□□□ -1.08
CCDC54-201ENST00000261058 ZFAND3Q9H8U3 227 aa8.3□□□□□ -1.08
CCDC54-201ENST00000261058 HRH3Q9Y5N1 445 aa8.3□□□□□ -1.08
CCDC54-201ENST00000261058 SFI1A8K8P3 1242 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 BRD1O95696 1058 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 INHAP05111 366 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 GDF10P55107 478 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 PSME1Q06323 249 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 CBLBQ13191 982 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 SLC4A9Q96Q91 983 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 ETNK1Q9HBU6 452 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 ZNF358Q9NW07 568 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 AVPP01185 164 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 EPHA4P54764 986 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 MEIOBQ8N635 442 aa8.29□□□□□ -1.08
CCDC54-201ENST00000261058 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.29□□□□□ -1.08
CCDC54-201ENST00000261058 ESF1Q9H501 851 aaKnown RBP8.29□□□□□ -1.08
CCDC54-201ENST00000261058 STAU1O95793 577 aaKnown RBP8.28□□□□□ -1.08
CCDC54-201ENST00000261058 OCLNQ16625 522 aa8.28□□□□□ -1.08
CCDC54-201ENST00000261058 PHLDB3Q6NSJ2 640 aa8.28□□□□□ -1.08
CCDC54-201ENST00000261058 KCTD17Q8N5Z5 321 aa8.28□□□□□ -1.08
CCDC54-201ENST00000261058 XAGE2Q96GT9 111 aa8.28□□□□□ -1.08
CCDC54-201ENST00000261058 IL2RAP01589 272 aa8.27□□□□□ -1.09
CCDC54-201ENST00000261058 SSFA2P28290 1259 aa8.27□□□□□ -1.09
CCDC54-201ENST00000261058 PTGIRP43119 386 aa8.26□□□□□ -1.09
CCDC54-201ENST00000261058 CLN3Q13286 438 aa8.26□□□□□ -1.09
CCDC54-201ENST00000261058 MTFR1Q15390 333 aa8.26□□□□□ -1.09
CCDC54-201ENST00000261058 ESCO1Q5FWF5 840 aa8.26□□□□□ -1.09
CCDC54-201ENST00000261058 TSEN2Q8NCE0 465 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms