RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 CTDP1Q9Y5B0 961 aaPredicted RBP9.26□□□□□ -0.93
GPNMB-201ENST00000258733 IFT140Q96RY7 1462 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 SYT10Q6XYQ8 523 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 KRT222Q8N1A0 295 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 CCDC26Q8TAB7 109 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 FBXO41Q8TF61 875 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 CTNNA3Q9UI47 895 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 ECM2O94769 699 aaPredicted RBP9.25□□□□□ -0.93
GPNMB-201ENST00000258733 U2AF1L5P0DN76 240 aaPredicted RBP9.25□□□□□ -0.93
GPNMB-201ENST00000258733 U2AF1Q01081 240 aaKnown RBP eCLIP9.25□□□□□ -0.93
GPNMB-201ENST00000258733 CEP89Q96ST8 783 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 VEZTQ9HBM0 779 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 BLOC1S6Q9UL45 172 aa9.25□□□□□ -0.93
GPNMB-201ENST00000258733 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.25□□□□□ -0.93
GPNMB-201ENST00000258733 PRXQ9BXM0 1461 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 EXOC5O00471 708 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 ATG3Q9NT62 314 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 TBC1D2BQ9UPU7 963 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 NAT2P11245 290 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 TBC1D25Q3MII6 688 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 NFATC2IPQ8NCF5 419 aa9.24□□□□□ -0.93
GPNMB-201ENST00000258733 PUF60Q9UHX1 559 aaKnown RBP9.24□□□□□ -0.93
GPNMB-201ENST00000258733 RWDD2BP57060 319 aa9.23□□□□□ -0.93
GPNMB-201ENST00000258733 IRF2BPLQ9H1B7 796 aa9.23□□□□□ -0.93
GPNMB-201ENST00000258733 TSPYL2Q9H2G4 693 aaPredicted RBP9.23□□□□□ -0.93
GPNMB-201ENST00000258733 TMCO5BA8MYB1 307 aa9.23□□□□□ -0.93
GPNMB-201ENST00000258733 FLT3P36888 993 aa9.23□□□□□ -0.93
GPNMB-201ENST00000258733 MYLK4Q86YV6 388 aaPredicted RBP9.23□□□□□ -0.93
GPNMB-201ENST00000258733 RPUSD2Q8IZ73 545 aaKnown RBP9.23□□□□□ -0.93
GPNMB-201ENST00000258733 MMTAG2Q9BU76 263 aaKnown RBP9.23□□□□□ -0.93
GPNMB-201ENST00000258733 IQSEC3Q9UPP2 1182 aaPredicted RBP9.23□□□□□ -0.93
GPNMB-201ENST00000258733 CLASP1Q7Z460 1538 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 NEBLO76041 1014 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 NOM1Q5C9Z4 860 aaKnown RBP9.22□□□□□ -0.93
GPNMB-201ENST00000258733 PACS2Q86VP3 889 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 DDX11L8A8MPP1 907 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 E2F5Q15329 346 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 NCAPG2Q86XI2 1143 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 SNRNP27Q8WVK2 155 aaKnown RBP9.22□□□□□ -0.93
GPNMB-201ENST00000258733 SH3GL3Q99963 347 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 SMG6Q86US8 1419 aaKnown RBP9.22□□□□□ -0.93
GPNMB-201ENST00000258733 TTC30AQ86WT1 665 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 TDRD7Q8NHU6 1098 aaKnown RBP9.22□□□□□ -0.93
GPNMB-201ENST00000258733 EXOC6Q8TAG9 804 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 CFAP53Q96M91 514 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 YIPF2Q9BWQ6 316 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 SLC24A3Q9HC58 644 aa9.22□□□□□ -0.93
GPNMB-201ENST00000258733 KANK1Q14678 1352 aa9.21□□□□□ -0.93
GPNMB-201ENST00000258733 IGHDP01880 384 aa9.21□□□□□ -0.93
GPNMB-201ENST00000258733 CLEC4GQ6UXB4 293 aa9.21□□□□□ -0.93
GPNMB-201ENST00000258733 NLRP13Q86W25 1043 aa9.21□□□□□ -0.93
GPNMB-201ENST00000258733 ARL10Q8N8L6 244 aa9.21□□□□□ -0.93
GPNMB-201ENST00000258733 CLIP1P30622 1438 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 DHX57Q6P158 1386 aaKnown RBP9.21□□□□□ -0.94
GPNMB-201ENST00000258733 MAP4K4O95819 1239 aaPredicted RBP9.21□□□□□ -0.94
GPNMB-201ENST00000258733 KIAA2012Q0VF49 1180 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 ARMC3Q5W041 872 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 CDC37L1Q7L3B6 337 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 MICAL1Q8TDZ2 1067 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 C17orf50Q8WW18 174 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 PDLIM2Q96JY6 352 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 AGAP3Q96P47 875 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 IQCGQ9H095 443 aaKnown RBP9.21□□□□□ -0.94
GPNMB-201ENST00000258733 PICK1Q9NRD5 415 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 LCMT1Q9UIC8 334 aa9.21□□□□□ -0.94
GPNMB-201ENST00000258733 FANCD2Q9BXW9 1451 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 PDCD2Q16342 344 aaPredicted RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 IQCF2Q8IXL9 164 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 MIEF2Q96C03 454 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 RWDD1Q9H446 243 aaPredicted RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 ABCF2Q9UG63 623 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 SOCS7O14512 581 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 CDKL5O76039 1030 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 STK10O94804 968 aaKnown RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 FCHSD2O94868 740 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 ALDH1B1P30837 517 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 RPS6KA3P51812 740 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 SF3B2Q13435 895 aaKnown RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 HSP90B2PQ58FF3 399 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 KCNV1Q6PIU1 500 aa9.2□□□□□ -0.94
GPNMB-201ENST00000258733 ELOA2Q8IYF1 753 aaPredicted RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 HIRIP3Q9BW71 556 aaPredicted RBP9.2□□□□□ -0.94
GPNMB-201ENST00000258733 SH3BP5O60239 455 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 TPM1P09493 284 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 PEX19P40855 299 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 PSMC1P62191 440 aaKnown RBP9.19□□□□□ -0.94
GPNMB-201ENST00000258733 MCM6Q14566 821 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 TAX1BP1Q86VP1 789 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 FMNL3Q8IVF7 1028 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 TTC30BQ8N4P2 665 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 URB2Q14146 1524 aaKnown RBP9.19□□□□□ -0.94
GPNMB-201ENST00000258733 SMC2O95347 1197 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 IMPDH2P12268 514 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 TBC1D8BQ0IIM8 1120 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 TSNAXIP1Q2TAA8 658 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC178Q5BJE1 867 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 SRLQ86TD4 932 aa9.19□□□□□ -0.94
GPNMB-201ENST00000258733 DRAXINQ8NBI3 349 aaPredicted RBP9.19□□□□□ -0.94
GPNMB-201ENST00000258733 CCDC34Q96HJ3 373 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms