RNA–Protein interactions for RNA: ENST00000248594.10

PTPN12-201, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN12, Length 3,406 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-201ENST00000248594 TERF2Q15554 542 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 TTC22Q5TAA0 569 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 DNAJC2Q99543 621 aaKnown RBP21.99■■□□□ 1.11
PTPN12-201ENST00000248594 SCAPERQ9BY12 1400 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 ZBTB7BO15156 539 aaPredicted RBP21.99■■□□□ 1.11
PTPN12-201ENST00000248594 REC8O95072 547 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 KRT222Q8N1A0 295 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 FAM184AQ8NB25 1140 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 NRBP1Q9UHY1 535 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 PPIP5K1Q6PFW1 1433 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 CCDC183Q5T5S1 534 aa21.99■■□□□ 1.11
PTPN12-201ENST00000248594 CCDC141Q6ZP82 1450 aa21.98■■□□□ 1.11
PTPN12-201ENST00000248594 POLR3GO15318 223 aaPredicted RBP21.98■■□□□ 1.11
PTPN12-201ENST00000248594 GABPB1Q06547 395 aaPredicted RBP21.98■■□□□ 1.11
PTPN12-201ENST00000248594 SPTLC3Q9NUV7 552 aa21.98■■□□□ 1.11
PTPN12-201ENST00000248594 SYTL4Q96C24 671 aaPredicted RBP21.97■■□□□ 1.11
PTPN12-201ENST00000248594 TRMT1Q9NXH9 659 aaKnown RBP21.97■■□□□ 1.11
PTPN12-201ENST00000248594 TSPYL6Q8N831 410 aa21.97■■□□□ 1.11
PTPN12-201ENST00000248594 TRIM5Q9C035 493 aa21.97■■□□□ 1.11
PTPN12-201ENST00000248594 CDC42BPBQ9Y5S2 1711 aa21.97■■□□□ 1.11
PTPN12-201ENST00000248594 POLR3AO14802 1390 aaPredicted RBP21.97■■□□□ 1.11
PTPN12-201ENST00000248594 BRD1O95696 1058 aa21.96■■□□□ 1.11
PTPN12-201ENST00000248594 TRIM35Q9UPQ4 493 aa21.96■■□□□ 1.11
PTPN12-201ENST00000248594 PREX2Q70Z35 1606 aa21.96■■□□□ 1.11
PTPN12-201ENST00000248594 MYO5CQ9NQX4 1742 aa21.95■■□□□ 1.11
PTPN12-201ENST00000248594 CAPN2P17655 700 aa21.95■■□□□ 1.1
PTPN12-201ENST00000248594 CKAP2LQ8IYA6 745 aa21.95■■□□□ 1.1
PTPN12-201ENST00000248594 PRDM15P57071 1507 aaPredicted RBP21.95■■□□□ 1.1
PTPN12-201ENST00000248594 EFCAB2Q5VUJ9 269 aa21.95■■□□□ 1.1
PTPN12-201ENST00000248594 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.95■■□□□ 1.1
PTPN12-201ENST00000248594 DDX41Q9UJV9 622 aaKnown RBP21.95■■□□□ 1.1
PTPN12-201ENST00000248594 LUZP1Q86V48 1076 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 PALD1Q9ULE6 856 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 ERC2O15083 957 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 SOX12O15370 315 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 CALCOCO1Q9P1Z2 691 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 HMOX1P09601 288 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 UVSSAQ2YD98 709 aa21.94■■□□□ 1.1
PTPN12-201ENST00000248594 KIF18AQ8NI77 898 aa21.93■■□□□ 1.1
PTPN12-201ENST00000248594 RSPH4AQ5TD94 716 aa21.93■■□□□ 1.1
PTPN12-201ENST00000248594 ELF2Q15723 593 aa21.93■■□□□ 1.1
PTPN12-201ENST00000248594 PHF23Q9BUL5 403 aaPredicted RBP21.93■■□□□ 1.1
PTPN12-201ENST00000248594 GORABQ5T7V8 394 aa21.92■■□□□ 1.1
PTPN12-201ENST00000248594 SRCIN1Q9C0H9 1055 aa21.92■■□□□ 1.1
PTPN12-201ENST00000248594 MX1P20591 662 aa21.92■■□□□ 1.1
PTPN12-201ENST00000248594 FBXW7Q969H0 707 aa21.92■■□□□ 1.1
PTPN12-201ENST00000248594 ZNF215Q9UL58 517 aaPredicted RBP21.92■■□□□ 1.1
PTPN12-201ENST00000248594 ADGBQ8N7X0 1667 aa21.91■■□□□ 1.1
PTPN12-201ENST00000248594 VPS37CA5D8V6 355 aaPredicted RBP21.91■■□□□ 1.1
PTPN12-201ENST00000248594 DDX54Q8TDD1 881 aaKnown RBP21.9■■□□□ 1.1
PTPN12-201ENST00000248594 HNRNPH2P55795 449 aaKnown RBP21.9■■□□□ 1.1
PTPN12-201ENST00000248594 NEK11Q8NG66 645 aa21.9■■□□□ 1.1
PTPN12-201ENST00000248594 MINK1Q8N4C8 1332 aaPredicted RBP21.9■■□□□ 1.1
PTPN12-201ENST00000248594 KMT5BQ4FZB7 885 aa21.89■■□□□ 1.1
PTPN12-201ENST00000248594 NOL10Q9BSC4 688 aaKnown RBP21.89■■□□□ 1.1
PTPN12-201ENST00000248594 CFAP65Q6ZU64 1925 aaKnown RBP21.89■■□□□ 1.09
PTPN12-201ENST00000248594 MCCP23508 829 aa21.89■■□□□ 1.09
PTPN12-201ENST00000248594 ABCA9Q8IUA7 1624 aa21.88■■□□□ 1.09
PTPN12-201ENST00000248594 CTIFO43310 598 aaKnown RBP21.88■■□□□ 1.09
PTPN12-201ENST00000248594 FERMT3Q86UX7 667 aa21.88■■□□□ 1.09
PTPN12-201ENST00000248594 TRAPPC8Q9Y2L5 1435 aa21.88■■□□□ 1.09
PTPN12-201ENST00000248594 SMTNL1A8MU46 457 aa21.88■■□□□ 1.09
PTPN12-201ENST00000248594 UGGT1Q9NYU2 1555 aa21.88■■□□□ 1.09
PTPN12-201ENST00000248594 CT47B1P0C2W7 299 aaPredicted RBP21.87■■□□□ 1.09
PTPN12-201ENST00000248594 C10orf67Q8IYJ2 551 aa21.87■■□□□ 1.09
PTPN12-201ENST00000248594 WDR33Q9C0J8 1336 aaKnown RBP21.87■■□□□ 1.09
PTPN12-201ENST00000248594 CEP135Q66GS9 1140 aa21.87■■□□□ 1.09
PTPN12-201ENST00000248594 SLC4A10Q6U841 1118 aa21.87■■□□□ 1.09
PTPN12-201ENST00000248594 TOMM22Q9NS69 142 aa21.87■■□□□ 1.09
PTPN12-201ENST00000248594 MAP4K4O95819 1239 aaPredicted RBP21.86■■□□□ 1.09
PTPN12-201ENST00000248594 MLECQ14165 292 aa21.86■■□□□ 1.09
PTPN12-201ENST00000248594 FILIP1Q7Z7B0 1213 aa21.86■■□□□ 1.09
PTPN12-201ENST00000248594 KRT24Q2M2I5 525 aa21.86■■□□□ 1.09
PTPN12-201ENST00000248594 SCAF11Q99590 1463 aaKnown RBP21.86■■□□□ 1.09
PTPN12-201ENST00000248594 PLCH2O75038 1416 aa21.86■■□□□ 1.09
PTPN12-201ENST00000248594 FBXO38Q6PIJ6 1188 aa21.86■■□□□ 1.09
PTPN12-201ENST00000248594 DNM1Q05193 864 aaKnown RBP21.85■■□□□ 1.09
PTPN12-201ENST00000248594 RSPH14Q9UHP6 348 aa21.85■■□□□ 1.09
PTPN12-201ENST00000248594 SAMD9LQ8IVG5 1584 aa21.85■■□□□ 1.09
PTPN12-201ENST00000248594 FAM173BQ6P4H8 233 aa21.85■■□□□ 1.09
PTPN12-201ENST00000248594 ARID5BQ14865 1188 aa21.84■■□□□ 1.09
PTPN12-201ENST00000248594 GOLGA6L4A6NEF3 574 aa21.84■■□□□ 1.09
PTPN12-201ENST00000248594 NPC1L1Q9UHC9 1359 aa21.84■■□□□ 1.09
PTPN12-201ENST00000248594 CCDC192P0DO97 292 aa21.84■■□□□ 1.09
PTPN12-201ENST00000248594 SYNMO15061 1565 aa21.83■■□□□ 1.09
PTPN12-201ENST00000248594 ZNF397Q8NF99 534 aaPredicted RBP21.83■■□□□ 1.09
PTPN12-201ENST00000248594 EXOC6BQ9Y2D4 811 aa21.83■■□□□ 1.09
PTPN12-201ENST00000248594 CPA1P15085 419 aa21.83■■□□□ 1.08
PTPN12-201ENST00000248594 MORC2Q9Y6X9 1032 aaPredicted RBP21.83■■□□□ 1.08
PTPN12-201ENST00000248594 NUTM2FA1L443 756 aa21.82■■□□□ 1.08
PTPN12-201ENST00000248594 PRKAR2BP31323 418 aa21.82■■□□□ 1.08
PTPN12-201ENST00000248594 USP27XA6NNY8 438 aa21.81■■□□□ 1.08
PTPN12-201ENST00000248594 SMC3Q9UQE7 1217 aa21.81■■□□□ 1.08
PTPN12-201ENST00000248594 PLXNC1O60486 1568 aa21.81■■□□□ 1.08
PTPN12-201ENST00000248594 UBE2HP62256 183 aa21.81■■□□□ 1.08
PTPN12-201ENST00000248594 DCTN1Q14203 1278 aa21.8■■□□□ 1.08
PTPN12-201ENST00000248594 TPM3P06753 285 aa21.8■■□□□ 1.08
PTPN12-201ENST00000248594 MRPL50Q8N5N7 158 aaKnown RBP21.8■■□□□ 1.08
PTPN12-201ENST00000248594 CLIP2Q9UDT6 1046 aa21.8■■□□□ 1.08
PTPN12-201ENST00000248594 ANKRD36BQ8N2N9 1353 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 155.1 ms