RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 ELL2O00472 640 aaPredicted RBP16.81■□□□□ 0.28
HIF3A-201ENST00000244302 KRT24Q2M2I5 525 aa16.81■□□□□ 0.28
HIF3A-201ENST00000244302 NCBP3Q53F19 620 aaKnown RBP16.81■□□□□ 0.28
HIF3A-201ENST00000244302 HSPA1LP34931 641 aa16.81■□□□□ 0.28
HIF3A-201ENST00000244302 EVA1CP58658 441 aa16.81■□□□□ 0.28
HIF3A-201ENST00000244302 BCL2L13Q9BXK5 485 aa16.81■□□□□ 0.28
HIF3A-201ENST00000244302 MBIPQ9NS73 344 aa16.81■□□□□ 0.28
HIF3A-201ENST00000244302 MPRIPQ6WCQ1 1025 aa16.79■□□□□ 0.28
HIF3A-201ENST00000244302 TSPYL6Q8N831 410 aa16.79■□□□□ 0.28
HIF3A-201ENST00000244302 GAS2L2Q8NHY3 880 aa16.79■□□□□ 0.28
HIF3A-201ENST00000244302 COL5A2P05997 1499 aaPredicted RBP16.79■□□□□ 0.28
HIF3A-201ENST00000244302 WDR17Q8IZU2 1322 aa16.79■□□□□ 0.28
HIF3A-201ENST00000244302 ZNF853P0CG23 659 aa16.79■□□□□ 0.28
HIF3A-201ENST00000244302 ZNF530Q6P9A1 599 aaPredicted RBP16.79■□□□□ 0.28
HIF3A-201ENST00000244302 MEGF6O75095 1541 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 GNAT3A8MTJ3 354 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 NCAPD2Q15021 1401 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 RNF123Q5XPI4 1314 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 C20orf194Q5TEA3 1177 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 MYH16Q9H6N6 1097 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 LMO7Q8WWI1 1683 aa16.78■□□□□ 0.28
HIF3A-201ENST00000244302 TCERG1O14776 1098 aaKnown RBP16.77■□□□□ 0.28
HIF3A-201ENST00000244302 RAPGEF4Q8WZA2 1011 aa16.77■□□□□ 0.28
HIF3A-201ENST00000244302 RTF1Q92541 710 aaKnown RBP16.77■□□□□ 0.28
HIF3A-201ENST00000244302 RRP1P56182 461 aaKnown RBP16.76■□□□□ 0.27
HIF3A-201ENST00000244302 PLEKHO1Q53GL0 409 aaPredicted RBP16.76■□□□□ 0.27
HIF3A-201ENST00000244302 IL16Q14005 1332 aa16.76■□□□□ 0.27
HIF3A-201ENST00000244302 CRB1P82279 1406 aa16.76■□□□□ 0.27
HIF3A-201ENST00000244302 ERICH6BQ5W0A0 696 aa16.76■□□□□ 0.27
HIF3A-201ENST00000244302 C8orf58Q8NAV2 365 aa16.76■□□□□ 0.27
HIF3A-201ENST00000244302 CFAP44Q96MT7 982 aa16.76■□□□□ 0.27
HIF3A-201ENST00000244302 LMOD3Q0VAK6 560 aa16.75■□□□□ 0.27
HIF3A-201ENST00000244302 FAM208AQ9UK61 1670 aaKnown RBP16.75■□□□□ 0.27
HIF3A-201ENST00000244302 IFT57Q9NWB7 429 aa16.75■□□□□ 0.27
HIF3A-201ENST00000244302 TNNQ9UQP3 1299 aa16.75■□□□□ 0.27
HIF3A-201ENST00000244302 MAP3K5Q99683 1374 aa16.74■□□□□ 0.27
HIF3A-201ENST00000244302 TATP17735 454 aaPredicted RBP16.74■□□□□ 0.27
HIF3A-201ENST00000244302 CHL1O00533 1208 aa16.73■□□□□ 0.27
HIF3A-201ENST00000244302 CYP27B1O15528 508 aa16.73■□□□□ 0.27
HIF3A-201ENST00000244302 RARSP54136 660 aaKnown RBP16.73■□□□□ 0.27
HIF3A-201ENST00000244302 GNAI1P63096 354 aa16.73■□□□□ 0.27
HIF3A-201ENST00000244302 COL22A1Q8NFW1 1626 aaPredicted RBP16.73■□□□□ 0.27
HIF3A-201ENST00000244302 ANP32EQ9BTT0 268 aa16.73■□□□□ 0.27
HIF3A-201ENST00000244302 CARD10Q9BWT7 1032 aa16.73■□□□□ 0.27
HIF3A-201ENST00000244302 KCNQ3O43525 872 aa16.72■□□□□ 0.27
HIF3A-201ENST00000244302 C8orf37Q96NL8 207 aa16.72■□□□□ 0.27
HIF3A-201ENST00000244302 AMOTQ4VCS5 1084 aa16.72■□□□□ 0.27
HIF3A-201ENST00000244302 AKAP4Q5JQC9 854 aa16.72■□□□□ 0.27
HIF3A-201ENST00000244302 VAMP4O75379 141 aa16.7■□□□□ 0.26
HIF3A-201ENST00000244302 C1orf141Q5JVX7 400 aa16.7■□□□□ 0.26
HIF3A-201ENST00000244302 SSH1Q8WYL5 1049 aa16.7■□□□□ 0.26
HIF3A-201ENST00000244302 TSPYL4Q9UJ04 414 aa16.7■□□□□ 0.26
HIF3A-201ENST00000244302 RNMTO43148 476 aaKnown RBP16.7■□□□□ 0.26
HIF3A-201ENST00000244302 PHKG2P15735 406 aa16.7■□□□□ 0.26
HIF3A-201ENST00000244302 DDX54Q8TDD1 881 aaKnown RBP16.7■□□□□ 0.26
HIF3A-201ENST00000244302 FRAT1Q92837 279 aaPredicted RBP16.7■□□□□ 0.26
HIF3A-201ENST00000244302 JCADQ9P266 1359 aa16.69■□□□□ 0.26
HIF3A-201ENST00000244302 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
HIF3A-201ENST00000244302 IL2RBP14784 551 aa16.69■□□□□ 0.26
HIF3A-201ENST00000244302 CALD1Q05682 793 aaKnown RBP16.69■□□□□ 0.26
HIF3A-201ENST00000244302 EXOC6Q8TAG9 804 aa16.69■□□□□ 0.26
HIF3A-201ENST00000244302 ABCC6O95255 1503 aa16.68■□□□□ 0.26
HIF3A-201ENST00000244302 NGLY1Q96IV0 654 aa16.68■□□□□ 0.26
HIF3A-201ENST00000244302 LRP6O75581 1613 aa16.67■□□□□ 0.26
HIF3A-201ENST00000244302 CEMIPQ8WUJ3 1361 aa16.67■□□□□ 0.26
HIF3A-201ENST00000244302 TAF7Q15545 349 aaPredicted RBP16.67■□□□□ 0.26
HIF3A-201ENST00000244302 ZCRB1Q8TBF4 217 aaKnown RBP16.67■□□□□ 0.26
HIF3A-201ENST00000244302 TWISTNBQ3B726 338 aaPredicted RBP16.67■□□□□ 0.26
HIF3A-201ENST00000244302 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
HIF3A-201ENST00000244302 SLC39A6Q13433 755 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 IFNL2Q8IZJ0 200 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 NFATC2IPQ8NCF5 419 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 NECTIN2Q92692 538 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 CLUAP1Q96AJ1 413 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 CRBNQ96SW2 442 aa16.66■□□□□ 0.26
HIF3A-201ENST00000244302 CCDC9Q9Y3X0 531 aaKnown RBP16.66■□□□□ 0.26
HIF3A-201ENST00000244302 COL14A1Q05707 1796 aaKnown RBP16.65■□□□□ 0.26
HIF3A-201ENST00000244302 OVOS2A0A0G2JMS6 1433 aa16.65■□□□□ 0.26
HIF3A-201ENST00000244302 KDM6AO15550 1401 aaPredicted RBP16.65■□□□□ 0.26
HIF3A-201ENST00000244302 PANK1Q8TE04 598 aa16.65■□□□□ 0.26
HIF3A-201ENST00000244302 SMC4Q9NTJ3 1288 aa16.65■□□□□ 0.26
HIF3A-201ENST00000244302 RBM19Q9Y4C8 960 aaKnown RBP16.65■□□□□ 0.26
HIF3A-201ENST00000244302 RLBP1P12271 317 aa16.64■□□□□ 0.25
HIF3A-201ENST00000244302 TEFQ10587 303 aa16.64■□□□□ 0.25
HIF3A-201ENST00000244302 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.64■□□□□ 0.25
HIF3A-201ENST00000244302 PRAMEF22A3QJZ6 481 aa16.63■□□□□ 0.25
HIF3A-201ENST00000244302 BTBD11A6QL63 1104 aa16.63■□□□□ 0.25
HIF3A-201ENST00000244302 NOB1Q9ULX3 412 aaKnown RBP16.63■□□□□ 0.25
HIF3A-201ENST00000244302 SPATA31A1Q5TZJ5 1347 aa16.62■□□□□ 0.25
HIF3A-201ENST00000244302 B4GALNT3Q6L9W6 998 aa16.62■□□□□ 0.25
HIF3A-201ENST00000244302 SLIT2O94813 1529 aa16.62■□□□□ 0.25
HIF3A-201ENST00000244302 BCL9LQ86UU0 1499 aa16.62■□□□□ 0.25
HIF3A-201ENST00000244302 PLCH1Q4KWH8 1693 aa16.62■□□□□ 0.25
HIF3A-201ENST00000244302 UNC5CLQ8IV45 518 aa16.61■□□□□ 0.25
HIF3A-201ENST00000244302 MRPL50Q8N5N7 158 aaKnown RBP16.6■□□□□ 0.25
HIF3A-201ENST00000244302 SPATA31A5Q5VU36 1347 aa16.6■□□□□ 0.25
HIF3A-201ENST00000244302 SPATA31A7Q8IWB4 1347 aa16.6■□□□□ 0.25
HIF3A-201ENST00000244302 CANXP27824 592 aaKnown RBP16.6■□□□□ 0.25
HIF3A-201ENST00000244302 EIF4A1P60842 406 aaKnown RBP16.6■□□□□ 0.25
HIF3A-201ENST00000244302 SLC52A2Q9HAB3 445 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms