RNA–Protein interactions for RNA: ENST00000235349.5

PRAMEF4-201, Transcript of PRAME family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRAMEF4, Length 1,828 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF4-201ENST00000235349 ADAMTS2O95450 1211 aa13.17□□□□□ -0.3
PRAMEF4-201ENST00000235349 STRN4Q9NRL3 753 aa13.17□□□□□ -0.3
PRAMEF4-201ENST00000235349 ABCC6O95255 1503 aa13.17□□□□□ -0.3
PRAMEF4-201ENST00000235349 IL16Q14005 1332 aa13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 LARP1Q6PKG0 1096 aaKnown RBP13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 GAS2L2Q8NHY3 880 aa13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 BTG4Q9NY30 223 aa13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 FAM208AQ9UK61 1670 aaKnown RBP13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 EVA1CP58658 441 aa13.16□□□□□ -0.3
PRAMEF4-201ENST00000235349 COL5A2P05997 1499 aaPredicted RBP13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 WDR17Q8IZU2 1322 aa13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 LMOD3Q0VAK6 560 aa13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 TOM1L2Q6ZVM7 507 aa13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 MYH16Q9H6N6 1097 aa13.15□□□□□ -0.3
PRAMEF4-201ENST00000235349 RNF123Q5XPI4 1314 aa13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 GNAT3A8MTJ3 354 aa13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 ZNF853P0CG23 659 aa13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 DEKP35659 375 aaKnown RBP13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 EXOSC9Q06265 439 aaKnown RBP13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
PRAMEF4-201ENST00000235349 VIRMAQ69YN4 1812 aaKnown RBP13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 HSPA1LP34931 641 aa13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 ZNF530Q6P9A1 599 aaPredicted RBP13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 LGR6Q9HBX8 967 aa13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 MIS18AQ9NYP9 233 aa13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 COL14A1Q05707 1796 aaKnown RBP13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 RAPGEF4Q8WZA2 1011 aa13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 RTF1Q92541 710 aaKnown RBP13.13□□□□□ -0.31
PRAMEF4-201ENST00000235349 MEGF6O75095 1541 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 CRB1P82279 1406 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 PLIN1O60240 522 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 GNAI1P63096 354 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 CFAP44Q96MT7 982 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 CARD10Q9BWT7 1032 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 MBIPQ9NS73 344 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 IFT57Q9NWB7 429 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 MAP3K5Q99683 1374 aa13.12□□□□□ -0.31
PRAMEF4-201ENST00000235349 HTATSF1O43719 755 aaKnown RBP13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 BCAR3O75815 825 aa13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 TATP17735 454 aaPredicted RBP13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 CALD1Q05682 793 aaKnown RBP13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 AMOTQ4VCS5 1084 aa13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 MPRIPQ6WCQ1 1025 aa13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 CHL1O00533 1208 aa13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 USP35Q9P2H5 1018 aa13.11□□□□□ -0.31
PRAMEF4-201ENST00000235349 RRP1P56182 461 aaKnown RBP13.1□□□□□ -0.31
PRAMEF4-201ENST00000235349 AKAP4Q5JQC9 854 aa13.1□□□□□ -0.31
PRAMEF4-201ENST00000235349 JCADQ9P266 1359 aa13.1□□□□□ -0.31
PRAMEF4-201ENST00000235349 TSPYL6Q8N831 410 aa13.09□□□□□ -0.31
PRAMEF4-201ENST00000235349 PLCH1Q4KWH8 1693 aa13.09□□□□□ -0.31
PRAMEF4-201ENST00000235349 ELL2O00472 640 aaPredicted RBP13.09□□□□□ -0.31
PRAMEF4-201ENST00000235349 RARSP54136 660 aaKnown RBP13.09□□□□□ -0.31
PRAMEF4-201ENST00000235349 C8orf58Q8NAV2 365 aa13.09□□□□□ -0.31
PRAMEF4-201ENST00000235349 CYP27B1O15528 508 aa13.08□□□□□ -0.32
PRAMEF4-201ENST00000235349 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
PRAMEF4-201ENST00000235349 KRT24Q2M2I5 525 aa13.08□□□□□ -0.32
PRAMEF4-201ENST00000235349 C1orf141Q5JVX7 400 aa13.08□□□□□ -0.32
PRAMEF4-201ENST00000235349 SPG7Q9UQ90 795 aa13.08□□□□□ -0.32
PRAMEF4-201ENST00000235349 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.07□□□□□ -0.32
PRAMEF4-201ENST00000235349 CEMIPQ8WUJ3 1361 aa13.07□□□□□ -0.32
PRAMEF4-201ENST00000235349 IL2RBP14784 551 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 PHKG2P15735 406 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 TAF7Q15545 349 aaPredicted RBP13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 ZCRB1Q8TBF4 217 aaKnown RBP13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 BCL2L13Q9BXK5 485 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 KAT6BQ8WYB5 2073 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 PKD1L3Q7Z443 1732 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 VAMP4O75379 141 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 C20orf194Q5TEA3 1177 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 TSPYL4Q9UJ04 414 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 LRRC37A3O60309 1634 aa13.06□□□□□ -0.32
PRAMEF4-201ENST00000235349 NRAPQ86VF7 1730 aa13.05□□□□□ -0.32
PRAMEF4-201ENST00000235349 OVOS2A0A0G2JMS6 1433 aa13.05□□□□□ -0.32
PRAMEF4-201ENST00000235349 NGLY1Q96IV0 654 aa13.05□□□□□ -0.32
PRAMEF4-201ENST00000235349 C8orf37Q96NL8 207 aa13.05□□□□□ -0.32
PRAMEF4-201ENST00000235349 PARP4Q9UKK3 1724 aaKnown RBP13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 IFNL2Q8IZJ0 200 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 SSH1Q8WYL5 1049 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 SCN11AQ9UI33 1791 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 LRP6O75581 1613 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 SLIT2O94813 1529 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 TCERG1O14776 1098 aaKnown RBP13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 KCNQ3O43525 872 aa13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 CT47B1P0C2W7 299 aaPredicted RBP13.04□□□□□ -0.32
PRAMEF4-201ENST00000235349 SHANK3Q9BYB0 1731 aa13.03□□□□□ -0.32
PRAMEF4-201ENST00000235349 TWISTNBQ3B726 338 aaPredicted RBP13.03□□□□□ -0.32
PRAMEF4-201ENST00000235349 DDX54Q8TDD1 881 aaKnown RBP13.03□□□□□ -0.32
PRAMEF4-201ENST00000235349 TNNQ9UQP3 1299 aa13.03□□□□□ -0.32
PRAMEF4-201ENST00000235349 KDM6AO15550 1401 aaPredicted RBP13.03□□□□□ -0.32
PRAMEF4-201ENST00000235349 NWD2Q9ULI1 1742 aa13.02□□□□□ -0.32
PRAMEF4-201ENST00000235349 TEFQ10587 303 aa13.02□□□□□ -0.32
PRAMEF4-201ENST00000235349 NOP58Q9Y2X3 529 aaKnown RBP13.02□□□□□ -0.32
PRAMEF4-201ENST00000235349 SPATA31A1Q5TZJ5 1347 aa13.02□□□□□ -0.32
PRAMEF4-201ENST00000235349 SPATA31A6Q5VVP1 1343 aa13.02□□□□□ -0.32
PRAMEF4-201ENST00000235349 ADAMTS7Q9UKP4 1686 aa13.02□□□□□ -0.33
PRAMEF4-201ENST00000235349 SIPA1L3O60292 1781 aaPredicted RBP13.02□□□□□ -0.33
PRAMEF4-201ENST00000235349 UNC5CLQ8IV45 518 aa13.02□□□□□ -0.33
PRAMEF4-201ENST00000235349 EXOC6Q8TAG9 804 aa13.02□□□□□ -0.33
PRAMEF4-201ENST00000235349 FRAT1Q92837 279 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms